Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP23882
DateThu Jan 5 11:40:18 GMT 2012
Unique Job ID77dcc14fd92447e8

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1fmtA_
Top template information
PDB header:formyltransferase
Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase;
PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli
Confidence and coverage
Confidence:100.0% Coverage: 98%
308 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKG
Secondary structure 
SS confidence 
Disorder  ???
??????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEMPRLGCINVHGSLLPRWRG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  AAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAEDTSGTLYDKLAELGPQGL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  ITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQLERCIRAFNPWPMSWLE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  IEGQPVKVWKASVIDTATNAAPGTILEANKQGIQVATGDGILNLLSLQPAGKKAMSAQDL
Secondary structure 
SS confidence 
Disorder 
????
??
??
Disorder confidence 
 
   .........310.....
Sequence  LNSRREWFVPGNRLV
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1fmt chain A

3D model

Region: 2 - 315
Aligned: 308
Modelled: 314
Confidence: 100.0%
Identity: 100%
PDB header:formyltransferase
Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase;
PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli

Phyre2

PDB 3rfo chain A

3D model

Region: 2 - 314
Aligned: 311
Modelled: 310
Confidence: 100.0%
Identity: 40%
PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: crystal structure of methyionyl-trna formyltransferase from bacillus2 anthracis

Phyre2

PDB 3q0i chain A

3D model

Region: 4 - 314
Aligned: 302
Modelled: 302
Confidence: 100.0%
Identity: 62%
PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: methionyl-trna formyltransferase from vibrio cholerae

Phyre2

PDB 3tqq chain A

3D model

Region: 4 - 314
Aligned: 301
Modelled: 311
Confidence: 100.0%
Identity: 51%
PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: structure of the methionyl-trna formyltransferase (fmt) from coxiella2 burnetii

Phyre2

PDB 1z7e chain C

3D model

Region: 5 - 314
Aligned: 295
Modelled: 310
Confidence: 100.0%
Identity: 29%
PDB header:hydrolase
Chain: C: PDB Molecule:protein arna;
PDBTitle: crystal structure of full length arna

Phyre2

PDB 1yrw chain A

3D model

Region: 5 - 305
Aligned: 287
Modelled: 292
Confidence: 100.0%
Identity: 29%
PDB header:transferase
Chain: A: PDB Molecule:protein arna;
PDBTitle: crystal structure of e.coli arna transformylase domain

Phyre2

PDB 1s3i chain A

3D model

Region: 5 - 302
Aligned: 290
Modelled: 298
Confidence: 100.0%
Identity: 33%
PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase;
PDBTitle: crystal structure of the n terminal hydrolase domain of 10-2 formyltetrahydrofolate dehydrogenase

Phyre2

PDB 1fmt chain A domain 2

3D model

Region: 2 - 207
Aligned: 200
Modelled: 206
Confidence: 100.0%
Identity: 100%
Fold: Formyltransferase
Superfamily: Formyltransferase
Family: Formyltransferase

Phyre2

PDB 2bln chain A domain 2

3D model

Region: 5 - 210
Aligned: 197
Modelled: 206
Confidence: 100.0%
Identity: 30%
Fold: Formyltransferase
Superfamily: Formyltransferase
Family: Formyltransferase

Phyre2

PDB 2bw0 chain A domain 2

3D model

Region: 5 - 206
Aligned: 196
Modelled: 202
Confidence: 100.0%
Identity: 36%
Fold: Formyltransferase
Superfamily: Formyltransferase
Family: Formyltransferase

Phyre2

PDB 1s3i chain A domain 2

3D model

Region: 5 - 206
Aligned: 196
Modelled: 202
Confidence: 100.0%
Identity: 39%
Fold: Formyltransferase
Superfamily: Formyltransferase
Family: Formyltransferase

Phyre2

PDB 1zgh chain A

3D model

Region: 6 - 266
Aligned: 221
Modelled: 229
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: methionyl-trna formyltransferase from clostridium thermocellum

Phyre2

PDB 3kcq chain A

3D model

Region: 3 - 220
Aligned: 200
Modelled: 208
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 anaplasma phagocytophilum

Phyre2

PDB 1jkx chain A

3D model

Region: 5 - 214
Aligned: 195
Modelled: 210
Confidence: 100.0%
Identity: 20%
Fold: Formyltransferase
Superfamily: Formyltransferase
Family: Formyltransferase

Phyre2

PDB 3dcj chain A

3D model

Region: 2 - 193
Aligned: 179
Modelled: 181
Confidence: 100.0%
Identity: 25%
PDB header:transferase
Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide
PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative

Phyre2

PDB 2ywr chain A

3D model

Region: 5 - 209
Aligned: 193
Modelled: 205
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of gar transformylase from aquifex2 aeolicus

Phyre2

PDB 3tqr chain A

3D model

Region: 3 - 214
Aligned: 196
Modelled: 212
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii

Phyre2

PDB 3p9x chain B

3D model

Region: 6 - 197
Aligned: 180
Modelled: 182
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans

Phyre2

PDB 1meo chain A

3D model

Region: 6 - 199
Aligned: 179
Modelled: 182
Confidence: 100.0%
Identity: 23%
Fold: Formyltransferase
Superfamily: Formyltransferase
Family: Formyltransferase

Phyre2

PDB 3n0v chain D

3D model

Region: 2 - 192
Aligned: 177
Modelled: 191
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution

Phyre2
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c1fmtA_
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c3rfoA_
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c3q0iA_
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c3tqqA_
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c1z7eC_
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c1yrwA_
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c1s3iA_
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d1fmta2
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d2blna2
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d2bw0a2
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d1s3ia2
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c1zghA_
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c3kcqA_
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d1jkxa_
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c3dcjA_
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c2ywrA_
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c3tqrA_
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c3p9xB_
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d1meoa_
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c3n0vD_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1fmtA_
100.0 100 PDB header:formyltransferase
Chain: A: PDB Molecule:methionyl-trna fmet formyltransferase;
PDBTitle: methionyl-trnafmet formyltransferase from escherichia coli
2c3rfoA_
100.0 40 PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: crystal structure of methyionyl-trna formyltransferase from bacillus2 anthracis
3c3q0iA_
100.0 62 PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: methionyl-trna formyltransferase from vibrio cholerae
4c3tqqA_
100.0 51 PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: structure of the methionyl-trna formyltransferase (fmt) from coxiella2 burnetii
5c1z7eC_
100.0 29 PDB header:hydrolase
Chain: C: PDB Molecule:protein arna;
PDBTitle: crystal structure of full length arna
6c1yrwA_
100.0 29 PDB header:transferase
Chain: A: PDB Molecule:protein arna;
PDBTitle: crystal structure of e.coli arna transformylase domain
7c1s3iA_
100.0 33 PDB header:hydrolase, oxidoreductase
Chain: A: PDB Molecule:10-formyltetrahydrofolate dehydrogenase;
PDBTitle: crystal structure of the n terminal hydrolase domain of 10-2 formyltetrahydrofolate dehydrogenase
8d1fmta2
100.0 100 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
9d2blna2
100.0 30 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
10d2bw0a2
100.0 36 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
11d1s3ia2
100.0 39 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
12c1zghA_
100.0 18 PDB header:transferase
Chain: A: PDB Molecule:methionyl-trna formyltransferase;
PDBTitle: methionyl-trna formyltransferase from clostridium thermocellum
13c3kcqA_
100.0 23 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 anaplasma phagocytophilum
14d1jkxa_
100.0 20 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
15c3dcjA_
100.0 25 PDB header:transferase
Chain: A: PDB Molecule:probable 5'-phosphoribosylglycinamide
PDBTitle: crystal structure of glycinamide formyltransferase (purn)2 from mycobacterium tuberculosis in complex with 5-methyl-5,3 6,7,8-tetrahydrofolic acid derivative
16c2ywrA_
100.0 19 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of gar transformylase from aquifex2 aeolicus
17c3tqrA_
100.0 23 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: structure of the phosphoribosylglycinamide formyltransferase (purn) in2 complex with ches from coxiella burnetii
18c3p9xB_
100.0 27 PDB header:transferase
Chain: B: PDB Molecule:phosphoribosylglycinamide formyltransferase;
PDBTitle: crystal structure of phosphoribosylglycinamide formyltransferase from2 bacillus halodurans
19d1meoa_
100.0 23 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
20c3n0vD_
100.0 20 PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pp_0327)2 from pseudomonas putida kt2440 at 2.25 a resolution
21c3o1lB_
not modelled 100.0 22 PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (pspto_4314)2 from pseudomonas syringae pv. tomato str. dc3000 at 2.20 a resolution
22c3louB_
not modelled 100.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of formyltetrahydrofolate deformylase (yp_105254.1)2 from burkholderia mallei atcc 23344 at 1.90 a resolution
23c3obiC_
not modelled 100.0 20 PDB header:hydrolase
Chain: C: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (np_949368)2 from rhodopseudomonas palustris cga009 at 1.95 a resolution
24c3nrbD_
not modelled 100.0 21 PDB header:hydrolase
Chain: D: PDB Molecule:formyltetrahydrofolate deformylase;
PDBTitle: crystal structure of a formyltetrahydrofolate deformylase (puru,2 pp_1943) from pseudomonas putida kt2440 at 2.05 a resolution
25d1zgha2
not modelled 100.0 19 Fold:Formyltransferase
Superfamily:Formyltransferase
Family:Formyltransferase
26d1fmta1
not modelled 100.0 100 Fold:FMT C-terminal domain-like
Superfamily:FMT C-terminal domain-like
Family:Post formyltransferase domain
27d2blna1
not modelled 99.9 28 Fold:FMT C-terminal domain-like
Superfamily:FMT C-terminal domain-like
Family:Post formyltransferase domain
28d1s3ia1
not modelled 99.9 25 Fold:FMT C-terminal domain-like
Superfamily:FMT C-terminal domain-like
Family:Post formyltransferase domain
29d2bw0a1
not modelled 99.9 20 Fold:FMT C-terminal domain-like
Superfamily:FMT C-terminal domain-like
Family:Post formyltransferase domain
30c3rbvA_
not modelled 96.5 26 PDB header:sugar binding protein
Chain: A: PDB Molecule:sugar 3-ketoreductase;
PDBTitle: crystal structure of kijd10, a 3-ketoreductase from actinomadura2 kijaniata incomplex with nadp
31c3ceaA_
not modelled 96.5 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:myo-inositol 2-dehydrogenase;
PDBTitle: crystal structure of myo-inositol 2-dehydrogenase (np_786804.1) from2 lactobacillus plantarum at 2.40 a resolution
32c3db2C_
not modelled 96.4 13 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative nadph-dependent oxidoreductase;
PDBTitle: crystal structure of a putative nadph-dependent oxidoreductase2 (dhaf_2064) from desulfitobacterium hafniense dcb-2 at 1.70 a3 resolution
33d1vlva2
not modelled 96.4 23 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
34c3euwB_
not modelled 96.3 17 PDB header:oxidoreductase
Chain: B: PDB Molecule:myo-inositol dehydrogenase;
PDBTitle: crystal structure of a myo-inositol dehydrogenase from corynebacterium2 glutamicum atcc 13032
35c3e18A_
not modelled 96.3 19 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of nad-binding protein from listeria innocua
36c3q2kB_
not modelled 95.9 16 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of the wlba dehydrogenase from bordetella pertussis2 in complex with nadh and udp-glcnaca
37c3v5nA_
not modelled 95.9 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase;
PDBTitle: the crystal structure of oxidoreductase from sinorhizobium meliloti
38c3e9mC_
not modelled 95.9 22 PDB header:oxidoreductase
Chain: C: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis
39c2p2gD_
not modelled 95.9 25 PDB header:transferase
Chain: D: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase from mycobacterium2 tuberculosis (rv1656): orthorhombic form
40c3ec7C_
not modelled 95.7 20 PDB header:oxidoreductase
Chain: C: PDB Molecule:putative dehydrogenase;
PDBTitle: crystal structure of putative dehydrogenase from salmonella2 typhimurium lt2
41c3nt5B_
not modelled 95.7 27 PDB header:oxidoreductase
Chain: B: PDB Molecule:inositol 2-dehydrogenase/d-chiro-inositol 3-dehydrogenase;
PDBTitle: crystal structure of myo-inositol dehydrogenase from bacillus subtilis2 with bound cofactor and product inosose
42c1zh8B_
not modelled 95.6 20 PDB header:oxidoreductase
Chain: B: PDB Molecule:oxidoreductase;
PDBTitle: crystal structure of oxidoreductase (tm0312) from thermotoga maritima2 at 2.50 a resolution
43d1lssa_
not modelled 95.6 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Potassium channel NAD-binding domain
44c3ezyB_
not modelled 95.5 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:dehydrogenase;
PDBTitle: crystal structure of probable dehydrogenase tm_0414 from2 thermotoga maritima
45c2ho3D_
not modelled 95.3 15 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of oxidoreductase, gfo/idh/moca family from2 streptococcus pneumoniae
46d1pvva2
not modelled 95.3 17 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
47d1a9xa4
not modelled 95.3 18 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
48d1zh8a1
not modelled 95.2 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
49c3m2tA_
not modelled 95.2 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of dehydrogenase from chromobacterium2 violaceum
50c3ic5A_
not modelled 95.2 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative saccharopine dehydrogenase;
PDBTitle: n-terminal domain of putative saccharopine dehydrogenase from ruegeria2 pomeroyi.
51c3eywA_
not modelled 95.1 25 PDB header:transport protein
Chain: A: PDB Molecule:c-terminal domain of glutathione-regulated potassium-efflux
PDBTitle: crystal structure of the c-terminal domain of e. coli kefc in complex2 with keff
52c2pzlB_
not modelled 95.1 17 PDB header:sugar binding protein
Chain: B: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme2 wbmg in complex with nad and udp
53c1ml4A_
not modelled 95.1 25 PDB header:transferase
Chain: A: PDB Molecule:aspartate transcarbamoylase;
PDBTitle: the pala-liganded aspartate transcarbamoylase catalytic subunit from2 pyrococcus abyssi
54d1ekxa2
not modelled 95.0 19 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
55c2p5uC_
not modelled 95.0 21 PDB header:isomerase
Chain: C: PDB Molecule:udp-glucose 4-epimerase;
PDBTitle: crystal structure of thermus thermophilus hb8 udp-glucose 4-2 epimerase complex with nad
56d1kewa_
not modelled 95.0 12 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
57d1qh8b_
not modelled 94.9 17 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
58d1ml4a2
not modelled 94.9 25 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
59c2o48X_
not modelled 94.9 26 PDB header:oxidoreductase
Chain: X: PDB Molecule:dimeric dihydrodiol dehydrogenase;
PDBTitle: crystal structure of mammalian dimeric dihydrodiol dehydrogenase
60d2nu7a1
not modelled 94.8 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:CoA-binding domain
61c2pk3B_
not modelled 94.8 14 PDB header:oxidoreductase
Chain: B: PDB Molecule:gdp-6-deoxy-d-lyxo-4-hexulose reductase;
PDBTitle: crystal structure of a gdp-4-keto-6-deoxy-d-mannose reductase
62d1zgha1
not modelled 94.8 15 Fold:FMT C-terminal domain-like
Superfamily:FMT C-terminal domain-like
Family:Post formyltransferase domain
63d1ek6a_
not modelled 94.7 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
64c3l4bG_
not modelled 94.7 18 PDB header:transport protein
Chain: G: PDB Molecule:trka k+ channel protien tm1088b;
PDBTitle: crystal structure of an octomeric two-subunit trka k+ channel ring2 gating assembly, tm1088a:tm1088b, from thermotoga maritima
65c1ofgF_
not modelled 94.6 14 PDB header:oxidoreductase
Chain: F: PDB Molecule:glucose-fructose oxidoreductase;
PDBTitle: glucose-fructose oxidoreductase
66c1h6dL_
not modelled 94.5 16 PDB header:protein translocation
Chain: L: PDB Molecule:precursor form of glucose-fructose
PDBTitle: oxidized precursor form of glucose-fructose oxidoreductase2 from zymomonas mobilis complexed with glycerol
67c3dtyA_
not modelled 94.5 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from pseudomonas2 syringae
68c3moiA_
not modelled 94.5 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:probable dehydrogenase;
PDBTitle: the crystal structure of the putative dehydrogenase from bordetella2 bronchiseptica rb50
69d1miob_
not modelled 94.5 14 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
70c1vm6B_
not modelled 94.5 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: crystal structure of dihydrodipicolinate reductase (tm1520) from2 thermotoga maritima at 2.27 a resolution
71d1m1nb_
not modelled 94.3 21 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
72c3gfgB_
not modelled 94.2 11 PDB header:oxidoreductase
Chain: B: PDB Molecule:uncharacterized oxidoreductase yvaa;
PDBTitle: structure of putative oxidoreductase yvaa from bacillus subtilis in2 triclinic form
73d1tuga1
not modelled 94.1 23 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
74c1vlvA_
not modelled 94.1 23 PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase (tm1097) from2 thermotoga maritima at 2.25 a resolution
75c2hunB_
not modelled 94.0 14 PDB header:lyase
Chain: B: PDB Molecule:336aa long hypothetical dtdp-glucose 4,6-dehydratase;
PDBTitle: crystal structure of hypothetical protein ph0414 from pyrococcus2 horikoshii ot3
76c3grfA_
not modelled 94.0 15 PDB header:transferase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: x-ray structure of ornithine transcarbamoylase from giardia2 lamblia
77c2q4eB_
not modelled 94.0 25 PDB header:oxidoreductase
Chain: B: PDB Molecule:probable oxidoreductase at4g09670;
PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at4g09670
78d2nvwa1
not modelled 93.9 22 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
79c3uuwB_
not modelled 93.8 15 PDB header:oxidoreductase
Chain: B: PDB Molecule:putative oxidoreductase with nad(p)-binding rossmann-fold
PDBTitle: 1.63 angstrom resolution crystal structure of dehydrogenase (mvim)2 from clostridium difficile.
80c1a1sA_
not modelled 93.8 21 PDB header:transcarbamylase
Chain: A: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: ornithine carbamoyltransferase from pyrococcus furiosus
81d1pg5a2
not modelled 93.7 21 Fold:ATC-like
Superfamily:Aspartate/ornithine carbamoyltransferase
Family:Aspartate/ornithine carbamoyltransferase
82c2ph5A_
not modelled 93.6 14 PDB header:transferase
Chain: A: PDB Molecule:homospermidine synthase;
PDBTitle: crystal structure of the homospermidine synthase hss from legionella2 pneumophila in complex with nad, northeast structural genomics target3 lgr54
83c2nvwB_
not modelled 93.5 24 PDB header:transcription
Chain: B: PDB Molecule:galactose/lactose metabolism regulatory protein
PDBTitle: crystal sctucture of transcriptional regulator gal80p from2 kluyveromymes lactis
84d1o6ca_
not modelled 93.5 11 Fold:UDP-Glycosyltransferase/glycogen phosphorylase
Superfamily:UDP-Glycosyltransferase/glycogen phosphorylase
Family:UDP-N-acetylglucosamine 2-epimerase
85c2glxD_
not modelled 93.5 20 PDB header:oxidoreductase
Chain: D: PDB Molecule:1,5-anhydro-d-fructose reductase;
PDBTitle: crystal structure analysis of bacterial 1,5-af reductase
86c3fd8A_
not modelled 93.5 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of an oxidoreductase from enterococcus2 faecalis
87c1drwA_
not modelled 93.4 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: escherichia coli dhpr/nhdh complex
88c3sc6F_
not modelled 93.4 22 PDB header:oxidoreductase
Chain: F: PDB Molecule:dtdp-4-dehydrorhamnose reductase;
PDBTitle: 2.65 angstrom resolution crystal structure of dtdp-4-dehydrorhamnose2 reductase (rfbd) from bacillus anthracis str. ames in complex with3 nadp
89c2ixaA_
not modelled 93.3 13 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-n-acetylgalactosaminidase;
PDBTitle: a-zyme, n-acetylgalactosaminidase
90c1kjjA_
not modelled 93.3 15 PDB header:transferase
Chain: A: PDB Molecule:phosphoribosylglycinamide formyltransferase 2;
PDBTitle: crystal structure of glycniamide ribonucleotide2 transformylase in complex with mg-atp-gamma-s
91c1pg5A_
not modelled 93.2 21 PDB header:transferase
Chain: A: PDB Molecule:aspartate carbamoyltransferase;
PDBTitle: crystal structure of the unligated (t-state) aspartate2 transcarbamoylase from the extremely thermophilic archaeon sulfolobus3 acidocaldarius
92c3tpfF_
not modelled 93.2 16 PDB header:transferase
Chain: F: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of anabolic ornithine carbamoyltransferase from2 campylobacter jejuni subsp. jejuni nctc 11168
93c3kuxA_
not modelled 93.2 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: structure of the ypo2259 putative oxidoreductase from yersinia pestis
94c3evnA_
not modelled 93.1 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of putative oxidoreductase from streptococcus2 agalactiae 2603v/r
95c2ys6A_
not modelled 93.1 12 PDB header:ligase
Chain: A: PDB Molecule:phosphoribosylglycinamide synthetase;
PDBTitle: crystal structure of gar synthetase from geobacillus kaustophilus
96c3dapB_
not modelled 93.1 13 PDB header:oxidoreductase
Chain: B: PDB Molecule:diaminopimelic acid dehydrogenase;
PDBTitle: c. glutamicum dap dehydrogenase in complex with nadp+ and2 the inhibitor 5s-isoxazoline
97d1ru8a_
not modelled 92.9 9 Fold:Adenine nucleotide alpha hydrolase-like
Superfamily:Adenine nucleotide alpha hydrolases-like
Family:N-type ATP pyrophosphatases
98d1ydwa1
not modelled 92.9 20 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
99c3ot5D_
not modelled 92.9 10 PDB header:isomerase
Chain: D: PDB Molecule:udp-n-acetylglucosamine 2-epimerase;
PDBTitle: 2.2 angstrom resolution crystal structure of putative udp-n-2 acetylglucosamine 2-epimerase from listeria monocytogenes
100c2axqA_
not modelled 92.9 22 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
101c2qx7A_
not modelled 92.8 16 PDB header:plant protein
Chain: A: PDB Molecule:eugenol synthase 1;
PDBTitle: structure of eugenol synthase from ocimum basilicum
102d1bxka_
not modelled 92.8 16 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
103c3enkB_
not modelled 92.7 15 PDB header:isomerase
Chain: B: PDB Molecule:udp-glucose 4-epimerase;
PDBTitle: 1.9a crystal structure of udp-glucose 4-epimerase from2 burkholderia pseudomallei
104c2xdqA_
not modelled 92.4 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase subunit n;
PDBTitle: dark operative protochlorophyllide oxidoreductase (chln-2 chlb)2 complex
105c1i36A_
not modelled 92.4 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:conserved hypothetical protein mth1747;
PDBTitle: structure of conserved protein mth1747 of unknown function2 reveals structural similarity with 3-hydroxyacid3 dehydrogenases
106c2rgwD_
not modelled 92.4 23 PDB header:transferase
Chain: D: PDB Molecule:aspartate carbamoyltransferase;
PDBTitle: catalytic subunit of m. jannaschii aspartate2 transcarbamoylase
107c2dzdB_
not modelled 92.4 13 PDB header:ligase
Chain: B: PDB Molecule:pyruvate carboxylase;
PDBTitle: crystal structure of the biotin carboxylase domain of2 pyruvate carboxylase
108d1f06a1
not modelled 92.4 13 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
109c3nklA_
not modelled 92.2 10 PDB header:oxidoreductase/lyase
Chain: A: PDB Molecule:udp-d-quinovosamine 4-dehydrogenase;
PDBTitle: crystal structure of udp-d-quinovosamine 4-dehydrogenase from vibrio2 fischeri
110c3gd5D_
not modelled 92.2 19 PDB header:transferase
Chain: D: PDB Molecule:ornithine carbamoyltransferase;
PDBTitle: crystal structure of ornithine carbamoyltransferase from gloeobacter2 violaceus
111d1vl0a_
not modelled 92.2 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
112c1xeaD_
not modelled 92.1 21 PDB header:oxidoreductase
Chain: D: PDB Molecule:oxidoreductase, gfo/idh/moca family;
PDBTitle: crystal structure of a gfo/idh/moca family oxidoreductase2 from vibrio cholerae
113d1qh8a_
not modelled 92.1 11 Fold:Chelatase-like
Superfamily:"Helical backbone" metal receptor
Family:Nitrogenase iron-molybdenum protein
114c2yy7B_
not modelled 92.1 12 PDB header:oxidoreductase
Chain: B: PDB Molecule:l-threonine dehydrogenase;
PDBTitle: crystal structure of thermolabile l-threonine dehydrogenase from2 flavobacterium frigidimaris kuc-1
115d1udca_
not modelled 92.1 15 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Tyrosine-dependent oxidoreductases
116c2q1uA_
not modelled 92.1 16 PDB header:sugar binding protein
Chain: A: PDB Molecule:putative nucleotide sugar epimerase/ dehydratase;
PDBTitle: crystal structure of the bordetella bronchiseptica enzyme wbmf in2 complex with nad+ and udp
117c2ggsB_
not modelled 92.1 8 PDB header:oxidoreductase
Chain: B: PDB Molecule:273aa long hypothetical dtdp-4-dehydrorhamnose
PDBTitle: crystal structure of hypothetical dtdp-4-dehydrorhamnose2 reductase from sulfolobus tokodaii
118c1fvoB_
not modelled 91.9 12 PDB header:transferase
Chain: B: PDB Molecule:ornithine transcarbamylase;
PDBTitle: crystal structure of human ornithine transcarbamylase complexed with2 carbamoyl phosphate
119d1gsoa2
not modelled 91.9 18 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like
120c2p2sA_
not modelled 91.9 16 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxidoreductase;
PDBTitle: crystal structure of putative oxidoreductase (yp_050235.1) from2 erwinia carotovora atroseptica scri1043 at 1.25 a resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0