Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP08204
DateThu Jan 5 11:00:58 GMT 2012
Unique Job ID776b6b0a36f5c270

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3jvpA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans
Confidence and coverage
Confidence:100.0% Coverage: 95%
536 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAIAIGLDFGSDSVRALAVDCATGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIES
Secondary structure 
SS confidence 
Disorder  ?
???
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  MEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWK
Secondary structure 
SS confidence 
Disorder 
??????
?????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  DHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIEL
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  CDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  DTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDI
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  LIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQH
Secondary structure 
SS confidence 
Disorder 
?
????
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  PELKTQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLA
Secondary structure 
SS confidence 
Disorder  ???????????
??
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  TDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  QIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPCSEQAQRFEQLYRRYQ
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........550.........560......
Sequence  QWAMSAEQHYLPTSAPAQAAQAVATL
Secondary structure 
SS confidence 
Disorder 
????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3jvp chain A

3D model

Region: 2 - 561
Aligned: 536
Modelled: 550
Confidence: 100.0%
Identity: 32%
PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans

Phyre2

PDB 3gbt chain A

3D model

Region: 1 - 554
Aligned: 490
Modelled: 523
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus

Phyre2

PDB 3gg4 chain B

3D model

Region: 1 - 551
Aligned: 509
Modelled: 539
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis

Phyre2

PDB 2d4w chain A

3D model

Region: 2 - 552
Aligned: 487
Modelled: 524
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060

Phyre2

PDB 3ifr chain B

3D model

Region: 2 - 552
Aligned: 479
Modelled: 515
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum

Phyre2

PDB 3flc chain X

3D model

Region: 2 - 550
Aligned: 484
Modelled: 519
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol

Phyre2

PDB 3hz6 chain A

3D model

Region: 1 - 548
Aligned: 492
Modelled: 527
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum

Phyre2

PDB 2zf5 chain O

3D model

Region: 1 - 556
Aligned: 488
Modelled: 529
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon

Phyre2

PDB 3g25 chain B

3D model

Region: 2 - 552
Aligned: 487
Modelled: 521
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.

Phyre2

PDB 2nlx chain A

3D model

Region: 3 - 550
Aligned: 473
Modelled: 504
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase

Phyre2

PDB 2w40 chain C

3D model

Region: 1 - 548
Aligned: 489
Modelled: 526
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol

Phyre2

PDB 2dpn chain B

3D model

Region: 3 - 552
Aligned: 482
Modelled: 528
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8

Phyre2

PDB 1glb chain G

3D model

Region: 2 - 547
Aligned: 475
Modelled: 519
Confidence: 100.0%
Identity: 19%
PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase

Phyre2

PDB 3ezw chain D

3D model

Region: 2 - 550
Aligned: 468
Modelled: 518
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices

Phyre2

PDB 1xup chain O

3D model

Region: 3 - 542
Aligned: 475
Modelled: 501
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol

Phyre2

PDB 3i8b chain A

3D model

Region: 1 - 536
Aligned: 471
Modelled: 497
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis

Phyre2

PDB 2cgk chain B

3D model

Region: 1 - 537
Aligned: 472
Modelled: 492
Confidence: 100.0%
Identity: 13%
PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.

Phyre2

PDB 3h6e chain B

3D model

Region: 1 - 540
Aligned: 458
Modelled: 510
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans

Phyre2

PDB 2p3r chain A domain 1

3D model

Region: 1 - 281
Aligned: 243
Modelled: 269
Confidence: 100.0%
Identity: 16%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Glycerol kinase

Phyre2

PDB 2p3r chain A domain 2

3D model

Region: 282 - 549
Aligned: 242
Modelled: 247
Confidence: 100.0%
Identity: 21%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Glycerol kinase

Phyre2
1
c3jvpA_
2
c3gbtA_
3
c3gg4B_
4
c2d4wA_
5
c3ifrB_
6
c3flcX_
7
c3hz6A_
8
c2zf5O_
9
c3g25B_
10
c2nlxA_
11
c2w40C_
12
c2dpnB_
13
c1glbG_
14
c3ezwD_
15
c1xupO_
16
c3i8bA_
17
c2cgkB_
18
c3h6eB_
19
d2p3ra1
20
d2p3ra2
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3jvpA_
100.0 32 PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans
2c3gbtA_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
3c3gg4B_
100.0 22 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis
4c2d4wA_
100.0 18 PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060
5c3ifrB_
100.0 22 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum
6c3flcX_
100.0 19 PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol
7c3hz6A_
100.0 16 PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
8c2zf5O_
100.0 19 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon
9c3g25B_
100.0 19 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
10c2nlxA_
100.0 18 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase
11c2w40C_
100.0 16 PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol
12c2dpnB_
100.0 21 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
13c1glbG_
100.0 19 PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase
14c3ezwD_
100.0 19 PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices
15c1xupO_
100.0 19 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol
16c3i8bA_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis
17c2cgkB_
100.0 13 PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.
18c3h6eB_
100.0 15 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans
19d2p3ra1
100.0 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
20d2p3ra2
100.0 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
21d1r59o1
not modelled 100.0 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
22d1r59o2
not modelled 100.0 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
23d1huxa_
not modelled 99.2 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
24c3h1qB_
not modelled 99.2 17 PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans
25d1zc6a1
not modelled 99.0 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
26d2ewsa1
not modelled 99.0 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
27c2e2pA_
not modelled 98.9 22 PDB header:transferase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp
28c1zc6A_
not modelled 98.5 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable n-acetylglucosamine kinase;
PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23.
29c2ch5D_
not modelled 98.5 18 PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine
30d2ch5a2
not modelled 98.5 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
31d1z05a3
not modelled 98.2 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
32d1z6ra2
not modelled 98.1 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
33c1dkgD_
not modelled 98.1 16 PDB header:complex (hsp24/hsp70)
Chain: D: PDB Molecule:molecular chaperone dnak;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak
34d2hoea3
not modelled 98.1 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
35c2qm1D_
not modelled 98.0 15 PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis
36c2ap1A_
not modelled 98.0 13 PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein
37c1z05A_
not modelled 98.0 10 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
38d1dkgd2
not modelled 97.8 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
39c2v7zA_
not modelled 97.8 18 PDB header:chaperone
Chain: A: PDB Molecule:heat shock cognate 71 kda protein;
PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state
40c3htvA_
not modelled 97.8 15 PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution
41c3d2fC_
not modelled 97.8 18 PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70
42d1woqa1
not modelled 97.7 25 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
43c1hpmA_
not modelled 97.7 20 PDB header:hydrolase (acting on acid anhydrides)
Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat-
PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site
44c1z6rC_
not modelled 97.7 7 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
45c2v7yA_
not modelled 97.7 23 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state
46c3eo3B_
not modelled 97.7 20 PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein
47c2aa4B_
not modelled 97.7 23 PDB header:transferase
Chain: B: PDB Molecule:putative n-acetylmannosamine kinase;
PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium
48d2e8aa2
not modelled 97.5 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
49d1bupa2
not modelled 97.5 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
50d2aa4a1
not modelled 97.4 26 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
51d2ap1a2
not modelled 97.4 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
52c3r8eA_
not modelled 97.4 24 PDB header:transferase
Chain: A: PDB Molecule:hypothetical sugar kinase;
PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution
53d1jcea2
not modelled 97.4 8 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
54c3iucC_
not modelled 97.4 19 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated
PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp
55c1xc3A_
not modelled 97.4 22 PDB header:transferase
Chain: A: PDB Molecule:putative fructokinase;
PDBTitle: structure of a putative fructokinase from bacillus subtilis
56c2hoeA_
not modelled 97.4 17 PDB header:transferase
Chain: A: PDB Molecule:n-acetylglucosamine kinase;
PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution
57c3vgkB_
not modelled 97.4 25 PDB header:transferase
Chain: B: PDB Molecule:glucokinase;
PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus
58d1sz2a1
not modelled 97.3 24 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
59d1e4ft1
not modelled 97.3 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
60d1q18a1
not modelled 97.3 27 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
61d2gupa1
not modelled 97.3 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
62c3cqyA_
not modelled 97.2 13 PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1
63c1e4gT_
not modelled 97.2 16 PDB header:bacterial cell division
Chain: T: PDB Molecule:cell division protein ftsa;
PDBTitle: ftsa (atp-bound form) from thermotoga maritima
64d2e1za1
not modelled 97.2 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
65c2q2rA_
not modelled 97.2 13 PDB header:transferase
Chain: A: PDB Molecule:glucokinase 1, putative;
PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp
66c1tuuA_
not modelled 97.2 19 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase crystallized with atpgs
67c2khoA_
not modelled 97.1 16 PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate
68c3mcpA_
not modelled 97.1 22 PDB header:transferase
Chain: A: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution
69d1e4ft2
not modelled 97.1 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
70c1woqB_
not modelled 97.0 24 PDB header:transferase
Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase;
PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution
71d1xc3a1
not modelled 97.0 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
72c2gupA_
not modelled 97.0 25 PDB header:transferase
Chain: A: PDB Molecule:rok family protein;
PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose
73c1jcgA_
not modelled 97.0 8 PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: mreb from thermotoga maritima, amppnp
74d1bdga1
not modelled 97.0 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
75c2ivoC_
not modelled 96.9 10 PDB header:hydrolase
Chain: C: PDB Molecule:up1;
PDBTitle: structure of up1 protein
76d1ig8a1
not modelled 96.8 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
77c1bdgA_
not modelled 96.6 15 PDB header:hexokinase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: hexokinase from schistosoma mansoni complexed with glucose
78c3qbwA_
not modelled 96.6 18 PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate
79c1ig8A_
not modelled 96.4 16 PDB header:transferase
Chain: A: PDB Molecule:hexokinase pii;
PDBTitle: crystal structure of yeast hexokinase pii with the correct2 amino acid sequence
80c1x3nA_
not modelled 96.4 14 PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium
81d1bg3a3
not modelled 96.4 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
82c3enoB_
not modelled 96.4 9 PDB header:hydrolase/unknown function
Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1
83d1czan3
not modelled 96.4 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
84c2iirJ_
not modelled 96.4 14 PDB header:transferase
Chain: J: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase from a hypothermophile thermotoga maritima
85c1zbsA_
not modelled 96.3 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pg1100;
PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18
86d1v4sa1
not modelled 96.3 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
87c3hm8D_
not modelled 96.2 15 PDB header:transferase
Chain: D: PDB Molecule:hexokinase-3;
PDBTitle: crystal structure of the c-terminal hexokinase domain of human hk3
88d1g99a1
not modelled 96.1 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
89d1czan1
not modelled 96.0 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
90c3p4iA_
not modelled 96.0 14 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of acetate kinase from mycobacterium avium
91d3bzka5
not modelled 95.9 35 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Tex RuvX-like domain-like
92c1t6dB_
not modelled 95.9 15 PDB header:hydrolase
Chain: B: PDB Molecule:exopolyphosphatase;
PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant
93c1v4sA_
not modelled 95.8 16 PDB header:transferase
Chain: A: PDB Molecule:glucokinase isoform 2;
PDBTitle: crystal structure of human glucokinase
94d2i7na2
not modelled 95.7 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
95d2zgya2
not modelled 95.7 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
96d2i7pa1
not modelled 95.7 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
97d1bg3a1
not modelled 95.4 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
98c3tsuA_
not modelled 95.4 22 PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
99c1qhaA_
not modelled 95.4 14 PDB header:transferase
Chain: A: PDB Molecule:protein (hexokinase);
PDBTitle: human hexokinase type i complexed with atp analogue amp-pnp
100c2ychA_
not modelled 95.3 23 PDB header:cell cycle
Chain: A: PDB Molecule:competence protein pilm;
PDBTitle: pilm-piln type iv pilus biogenesis complex
101d1u6za2
not modelled 95.3 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase
102c3lm2B_
not modelled 95.3 15 PDB header:transferase
Chain: B: PDB Molecule:putative kinase;
PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution
103c1sazA_
not modelled 95.1 18 PDB header:transferase
Chain: A: PDB Molecule:probable butyrate kinase 2;
PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima
104c2d0oA_
not modelled 95.1 15 PDB header:chaperone
Chain: A: PDB Molecule:diol dehydratase-reactivating factor large
PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+
105c2i7pA_
not modelled 94.8 18 PDB header:transferase
Chain: A: PDB Molecule:pantothenate kinase 3;
PDBTitle: crystal structure of human pank3 in complex with accoa
106d1t6ca1
not modelled 94.7 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase
107c3mdqA_
not modelled 94.7 15 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution
108c1mwmA_
not modelled 94.1 13 PDB header:structural protein
Chain: A: PDB Molecule:parm;
PDBTitle: parm from plasmid r1 adp form
109c2floA_
not modelled 93.7 15 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of exopolyphosphatase (ppx) from e. coli o157:h7
110c3t69A_
not modelled 93.5 21 PDB header:transferase
Chain: A: PDB Molecule:putative 2-dehydro-3-deoxygalactonokinase;
PDBTitle: crystal structure of a putative 2-dehydro-3-deoxygalactonokinase2 protein from sinorhizobium meliloti
111c3hi0B_
not modelled 93.4 14 PDB header:hydrolase
Chain: B: PDB Molecule:putative exopolyphosphatase;
PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution
112d1ig8a2
not modelled 93.4 21 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
113c3cerD_
not modelled 93.0 14 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:possible exopolyphosphatase-like protein;
PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13
114d1saza2
not modelled 92.4 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
115d2d0oa2
not modelled 91.8 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit
116c1zxoB_
not modelled 91.5 15 PDB header:unknown function
Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1;
PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25.
117d2e8aa1
not modelled 91.3 31 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
118d1v4sa2
not modelled 90.9 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
119c3khyA_
not modelled 90.7 19 PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of a propionate kinase from francisella2 tularensis subsp. tularensis schu s4
120d1q18a2
not modelled 90.6 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0