Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	K	T	V	N	E	L	I	K	D	I	N	S	L	T	S	H	L	H	E	K	D	F	L	L	T	W	E	Q	T	P	D	E	L	K	Q	V	L	D	V	A	A	A	L	K	A	L	R	A	E	N	I	S	T	K	V	F	N	S
Secondary structure
SS confidence
Disorder		?	?	?	?													?	?																															?				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		G	L	G	I	S	V	F	R	D	N	S	T	R	T	R	F	S	Y	A	S	A	L	N	L	L	G	L	A	Q	Q	D	L	D	E	G	K	S	Q	I	A	H	G	E	T	V	R	E	T	A	N	M	I	S	F	C	A	D	A	I	G
Secondary structure
SS confidence
Disorder																																				?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		I	R	D	D	M	Y	L	G	A	G	N	A	Y	M	R	E	V	G	A	A	L	D	D	G	Y	K	Q	G	V	L	P	Q	R	P	A	L	V	N	L	Q	C	D	I	D	H	P	T	Q	S	M	A	D	L	A	W	L	R	E	H	F
Secondary structure
SS confidence
Disorder										?	?	?																					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		G	S	L	E	N	L	K	G	K	K	I	A	M	T	W	A	Y	S	P	S	Y	G	K	P	L	S	V	P	Q	G	I	I	G	L	M	T	R	F	G	M	D	V	T	L	A	H	P	E	G	Y	D	L	I	P	D	V	V	E	V	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		K	N	N	A	K	A	S	G	G	S	F	R	Q	V	T	S	M	E	E	A	F	K	D	A	D	I	V	Y	P	K	S	W	A	P	Y	K	V	M	E	E	R	T	E	L	L	R	A	N	D	H	E	G	L	K	A	L	E	K	Q	C
Secondary structure
SS confidence
Disorder																																														?		?	?		?	?	?	?			?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	A	Q	N	A	Q	H	K	D	W	H	C	T	E	E	M	M	E	L	T	R	D	G	E	A	L	Y	M	H	C	L	P	A	D	I	S	G	V	S	C	K	E	G	E	V	T	E	G	V	F	E	K	Y	R	I	A	T	Y	K	E
Secondary structure
SS confidence
Disorder		?	?																																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Sequence		A	S	W	K	P	Y	I	I	A	A	M	I	L	S	R	K	Y	A	K	P	G	A	L	L	E	Q	L	L	K	E	A	Q	E	R	V	K
Secondary structure
SS confidence
Disorder																					?	?	?	?	?							?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3q98 chain A Region: 3 - 396 Aligned: 379 Modelled: 366 Confidence: 100.0% Identity: 96% PDB header:transferase Chain: A: PDB Molecule:transcarbamylase; PDBTitle: structure of ygew encoded protein from e. coli Phyre2 PDB 2otc chain A Region: 17 - 378 Aligned: 319 Modelled: 328 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: ornithine transcarbamoylase complexed with n-2 (phosphonacetyl)-l-ornithine Phyre2 PDB 3upd chain A Region: 13 - 375 Aligned: 315 Modelled: 330 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: 2.9 angstrom crystal structure of ornithine carbamoyltransferase2 (argf) from vibrio vulnificus Phyre2 PDB 2w37 chain A Region: 16 - 378 Aligned: 312 Modelled: 322 Confidence: 100.0% Identity: 25% PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase, catabolic; PDBTitle: crystal structure of the hexameric catabolic ornithine2 transcarbamylase from lactobacillus hilgardii Phyre2 PDB 1ort chain D Region: 18 - 378 Aligned: 317 Modelled: 327 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: D: PDB Molecule:ornithine transcarbamoylase; PDBTitle: ornithine transcarbamoylase from pseudomonas aeruginosa Phyre2 PDB 1fvo chain B Region: 18 - 381 Aligned: 311 Modelled: 323 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: B: PDB Molecule:ornithine transcarbamylase; PDBTitle: crystal structure of human ornithine transcarbamylase complexed with2 carbamoyl phosphate Phyre2 PDB 1a1s chain A Region: 18 - 379 Aligned: 310 Modelled: 321 Confidence: 100.0% Identity: 27% PDB header:transcarbamylase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: ornithine carbamoyltransferase from pyrococcus furiosus Phyre2 PDB 1vlv chain A Region: 13 - 375 Aligned: 302 Modelled: 310 Confidence: 100.0% Identity: 30% PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase (tm1097) from2 thermotoga maritima at 2.25 a resolution Phyre2 PDB 1ml4 chain A Region: 18 - 378 Aligned: 305 Modelled: 327 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:aspartate transcarbamoylase; PDBTitle: the pala-liganded aspartate transcarbamoylase catalytic subunit from2 pyrococcus abyssi Phyre2 PDB 1zq2 chain A Region: 22 - 374 Aligned: 316 Modelled: 335 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of n-acetyl-l-ornithine transcarbamylase2 complexed with cp Phyre2 PDB 1tug chain A domain 1 Region: 17 - 382 Aligned: 305 Modelled: 332 Confidence: 100.0% Identity: 22% Fold: ATC-like Superfamily: Aspartate/ornithine carbamoyltransferase Family: Aspartate/ornithine carbamoyltransferase Phyre2 PDB 3sds chain A Region: 21 - 380 Aligned: 300 Modelled: 314 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase, mitochondrial; PDBTitle: crystal structure of a mitochondrial ornithine carbamoyltransferase2 from coccidioides immitis Phyre2 PDB 2p2g chain D Region: 22 - 374 Aligned: 288 Modelled: 301 Confidence: 100.0% Identity: 28% PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from mycobacterium2 tuberculosis (rv1656): orthorhombic form Phyre2 PDB 3tpf chain F Region: 21 - 379 Aligned: 298 Modelled: 318 Confidence: 100.0% Identity: 27% PDB header:transferase Chain: F: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of anabolic ornithine carbamoyltransferase from2 campylobacter jejuni subsp. jejuni nctc 11168 Phyre2 PDB 1js1 chain Z Region: 22 - 380 Aligned: 305 Modelled: 305 Confidence: 100.0% Identity: 26% PDB header:transferase Chain: Z: PDB Molecule:transcarbamylase; PDBTitle: crystal structure of a new transcarbamylase from the2 anaerobic bacterium bacteroides fragilis at 2.0 a3 resolution Phyre2 PDB 1pg5 chain A Region: 22 - 378 Aligned: 290 Modelled: 323 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:aspartate carbamoyltransferase; PDBTitle: crystal structure of the unligated (t-state) aspartate2 transcarbamoylase from the extremely thermophilic archaeon sulfolobus3 acidocaldarius Phyre2 PDB 2rgw chain D Region: 22 - 375 Aligned: 290 Modelled: 319 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: D: PDB Molecule:aspartate carbamoyltransferase; PDBTitle: catalytic subunit of m. jannaschii aspartate2 transcarbamoylase Phyre2 PDB 2ef0 chain A Region: 21 - 375 Aligned: 283 Modelled: 300 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from thermus2 thermophilus Phyre2 PDB 3gd5 chain D Region: 19 - 377 Aligned: 284 Modelled: 310 Confidence: 100.0% Identity: 29% PDB header:transferase Chain: D: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: crystal structure of ornithine carbamoyltransferase from gloeobacter2 violaceus Phyre2 PDB 3grf chain A Region: 20 - 379 Aligned: 293 Modelled: 318 Confidence: 100.0% Identity: 24% PDB header:transferase Chain: A: PDB Molecule:ornithine carbamoyltransferase; PDBTitle: x-ray structure of ornithine transcarbamoylase from giardia2 lamblia Phyre2 1 c3q98A_ 2 c2otcA_ 3 c3updA_ 4 c2w37A_ 5 c1ortD_ 6 c1fvoB_ 7 c1a1sA_ 8 c1vlvA_ 9 c1ml4A_ 10 c1zq2A_ 11 d1tuga1 12 c3sdsA_ 13 c2p2gD_ 14 c3tpfF_ 15 c1js1Z_ 16 c1pg5A_ 17 c2rgwD_ 18 c2ef0A_ 19 c3gd5D_ 20 c3grfA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433