PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3q98A_

Fold library id	PDB Header	Molecule	Title
c3q98A_	PDB header: transferase	Chain: A: PDB Molecule: transcarbamylase;	PDBTitle: structure of ygew encoded protein from e. coli

Links to external resources
Added to library: Sat May 7 08:54:58 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X X K T V N E L I K D I N S L T S H L H E K D F L L T W E Q T P D E L K Q V L D V A A A L K A L R A E N I S T K V F N S G L G I S V F R D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
G G G S
G G G S
T T B
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F S Y A S A L N L L G L A Q Q D L D H G E T V R E T A N X I S F C A D A I G I R D D X Y L G A Y X R E V G A A L D D G Y K Q G V L P Q R P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T T
T T
T T S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L V N L Q C D I D H P T Q S X A D L A W L R E H F G S L E N L K G K K I A X T W A Y S P S Y G K P L S V P Q G I I G L X T R F G X D V T L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S S G G G T T
S S
T G G G T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence H P E G Y D L I P D V V E V A K N N A K A S G G S F R Q V T S X E E A F K D A D I V Y P K S W A P Y K V X E E R T E L L R A N D H E G L K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
S
T T
S
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L E K Q C L A Q N A Q H K D W H C T E E X X E L T R D G E A L Y X H C L P A D I S G V S C K E G E V T E G V F E K Y R I A T Y K E A S W K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
B
T S G G G
S S
T T T B S S
S T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 .

Sequence Y I I A A X I L S R K Y A K P G A L L E Q L L K E A Q E R V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	X	K	T	V	N	E	L	I	K	D	I	N	S	L	T	S	H	L	H	E	K	D	F	L	L	T	W	E	Q	T	P	D	E	L	K	Q	V	L	D	V	A	A	A	L	K	A	L	R	A	E	N	I	S	T	K	V	F	N	S	G	L	G	I	S	V	F	R	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T					G	G	G	S					G	G	G	S																					T	T	B						S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	S	Y	A	S	A	L	N	L	L	G	L	A	Q	Q	D	L	D	H	G	E	T	V	R	E	T	A	N	X	I	S	F	C	A	D	A	I	G	I	R	D	D	X	Y	L	G	A	Y	X	R	E	V	G	A	A	L	D	D	G	Y	K	Q	G	V	L	P	Q	R	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T										T	T								T		T	T																													T	T	S		S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	V	N	L	Q	C	D	I	D	H	P	T	Q	S	X	A	D	L	A	W	L	R	E	H	F	G	S	L	E	N	L	K	G	K	K	I	A	X	T	W	A	Y	S	P	S	Y	G	K	P	L	S	V	P	Q	G	I	I	G	L	X	T	R	F	G	X	D	V	T	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S																		S	S	S	G	G	G	T	T											S	S					T											G	G	G	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	H	P	E	G	Y	D	L	I	P	D	V	V	E	V	A	K	N	N	A	K	A	S	G	G	S	F	R	Q	V	T	S	X	E	E	A	F	K	D	A	D	I	V	Y	P	K	S	W	A	P	Y	K	V	X	E	E	R	T	E	L	L	R	A	N	D	H	E	G	L	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T																			T							S							T	T		S																						T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	E	K	Q	C	L	A	Q	N	A	Q	H	K	D	W	H	C	T	E	E	X	X	E	L	T	R	D	G	E	A	L	Y	X	H	C	L	P	A	D	I	S	G	V	S	C	K	E	G	E	V	T	E	G	V	F	E	K	Y	R	I	A	T	Y	K	E	A	S	W	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T	T			B							T	S	G	G	G								S	S					T	T	T	B	S	S		S																			T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Sequence	Y	I	I	A	A	X	I	L	S	R	K	Y	A	K	P	G	A	L	L	E	Q	L	L	K	E	A	Q	E	R	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S															B	S