Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	L	D	A	Q	T	I	A	T	V	K	A	T	I	P	L	L	V	E	T	G	P	K	L	T	A	H	F	Y	D	R	M	F	T	H	N	P	E	L	K	E	I	F	N	M	S	N	Q	R	N	G	D	Q	R	E	A	L	F	N	A
Secondary structure
SS confidence
Disorder		?	?	?																																													?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		I	A	A	Y	A	S	N	I	E	N	L	P	A	L	L	P	A	V	E	K	I	A	Q	K	H	T	S	F	Q	I	K	P	E	Q	Y	N	I	V	G	E	H	L	L	A	T	L	D	E	M	F	S	P	G	Q	E	V	L	D	A	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	K	A	Y	G	V	L	A	N	V	F	I	N	R	E	A	E	I	Y	N	E	N	A	S	K	A	G	G	W	E	G	T	R	D	F	R	I	V	A	K	T	P	R	S	A	L	I	T	S	F	E	L	E	P	V	D	G	G	A	V
Secondary structure
SS confidence
Disorder																						?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	E	Y	R	P	G	Q	Y	L	G	V	W	L	K	P	E	G	F	P	H	Q	E	I	R	Q	Y	S	L	T	R	K	P	D	G	K	G	Y	R	I	A	V	K	R	E	E	G	G	Q	V	S	N	W	L	H	N	H	A	N	V	G
Secondary structure
SS confidence
Disorder																			?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		D	V	V	K	L	V	A	P	A	G	D	F	F	M	A	V	A	D	D	T	P	V	T	L	I	S	A	G	V	G	Q	T	P	M	L	A	M	L	D	T	L	A	K	A	G	H	T	A	Q	V	N	W	F	H	A	A	E	N	G	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		V	H	A	F	A	D	E	V	K	E	L	G	Q	S	L	P	R	F	T	A	H	T	W	Y	R	Q	P	S	E	A	D	R	A	K	G	Q	F	D	S	E	G	L	M	D	L	S	K	L	E	G	A	F	S	D	P	T	M	Q	F	Y
Secondary structure
SS confidence
Disorder																														?	?	?	?	?																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Sequence		L	C	G	P	V	G	F	M	Q	F	T	A	K	Q	L	V	D	L	G	V	K	Q	E	N	I	H	Y	E	C	F	G	P	H	K	V	L
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1gvh chain A Region: 1 - 396 Aligned: 396 Modelled: 396 Confidence: 100.0% Identity: 100% PDB header:oxidoreductase Chain: A: PDB Molecule:flavohemoprotein; PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket Phyre2 PDB 1cqx chain B Region: 1 - 393 Aligned: 392 Modelled: 393 Confidence: 100.0% Identity: 46% PDB header:lipid binding protein Chain: B: PDB Molecule:flavohemoprotein; PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution Phyre2 PDB 1krh chain A Region: 152 - 393 Aligned: 231 Modelled: 242 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase Phyre2 PDB 2r6h chain C Region: 152 - 391 Aligned: 234 Modelled: 240 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis Phyre2 PDB 2eix chain A Region: 152 - 387 Aligned: 228 Modelled: 236 Confidence: 100.0% Identity: 22% PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-cytochrome b5 reductase; PDBTitle: the structure of physarum polycephalum cytochrome b5 reductase Phyre2 PDB 1tvc chain A Region: 148 - 393 Aligned: 237 Modelled: 246 Confidence: 100.0% Identity: 23% PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase component c; PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath) Phyre2 PDB 3fpk chain B Region: 152 - 390 Aligned: 232 Modelled: 239 Confidence: 100.0% Identity: 18% PDB header:flavoprotein, oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of ferredoxin-nadp reductase from salmonella2 typhimurium Phyre2 PDB 2ok8 chain D Region: 154 - 390 Aligned: 230 Modelled: 234 Confidence: 100.0% Identity: 17% PDB header:oxidoreductase Chain: D: PDB Molecule:putative ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp+ reductase from plasmodium falciparum Phyre2 PDB 1a8p chain A Region: 154 - 390 Aligned: 231 Modelled: 237 Confidence: 100.0% Identity: 13% PDB header:oxidoreductase Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase; PDBTitle: ferredoxin reductase from azotobacter vinelandii Phyre2 PDB 2bgj chain B Region: 153 - 390 Aligned: 233 Modelled: 238 Confidence: 100.0% Identity: 14% PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase; PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms Phyre2 PDB 1fnc chain A Region: 154 - 390 Aligned: 233 Modelled: 237 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase (nadp+(a),ferredoxin(a)) Chain: A: PDB Molecule:ferredoxin-nadp+ reductase; PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states Phyre2 PDB 1umk chain A Region: 152 - 387 Aligned: 228 Modelled: 236 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-cytochrome b5 reductase; PDBTitle: the structure of human erythrocyte nadh-cytochrome b52 reductase Phyre2 PDB 2pia chain A Region: 145 - 395 Aligned: 229 Modelled: 251 Confidence: 100.0% Identity: 22% PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] Phyre2 PDB 1qfj chain D Region: 154 - 390 Aligned: 219 Modelled: 237 Confidence: 100.0% Identity: 16% PDB header:oxidoreductase Chain: D: PDB Molecule:protein (flavin reductase); PDBTitle: crystal structure of nad(p)h:flavin oxidoreductase from escherichia2 coli Phyre2 PDB 1qgy chain A Region: 154 - 390 Aligned: 234 Modelled: 237 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp+ reductase; PDBTitle: ferredoxin:nadp+ reductase mutant with lys 75 replaced by glu (k75e) Phyre2 PDB 2b5o chain A Region: 154 - 390 Aligned: 235 Modelled: 237 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp reductase Phyre2 PDB 1jb9 chain A Region: 153 - 388 Aligned: 228 Modelled: 236 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of the ferredoxin:nadp+ reductase from maize root at2 1.7 angstroms Phyre2 PDB 1cne chain A Region: 151 - 389 Aligned: 236 Modelled: 239 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:nitrate reductase; PDBTitle: structural studies on corn nitrate reductase: refined2 structure of the cytochrome b reductase fragment at 2.53 angstroms, its adp complex and an active site mutant and4 modeling of the cytochrome b domain Phyre2 PDB 2rc5 chain D Region: 154 - 390 Aligned: 234 Modelled: 237 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: D: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: refined structure of fnr from leptospira interrogans Phyre2 PDB 1gvh chain A domain 1 Region: 1 - 146 Aligned: 146 Modelled: 146 Confidence: 100.0% Identity: 100% Fold: Globin-like Superfamily: Globin-like Family: Globins Phyre2 1 c1gvhA_ 2 c1cqxB_ 3 c1krhA_ 4 c2r6hC_ 5 c2eixA_ 6 c1tvcA_ 7 c3fpkB_ 8 c2ok8D_ 9 c1a8pA_ 10 c2bgjB_ 11 c1fncA_ 12 c1umkA_ 13 c2piaA_ 14 c1qfjD_ 15 c1qgyA_ 16 c2b5oA_ 17 c1jb9A_ 18 c1cneA_ 19 c2rc5D_ 20 d1gvha1 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1gvhA_ 100.0 100 PDB header:oxidoreductase Chain: A: PDB Molecule:flavohemoprotein; PDBTitle: the x-ray structure of ferric escherichia coli2 flavohemoglobin reveals an unespected geometry of the3 distal heme pocket 2 c1cqxB_ 100.0 46 PDB header:lipid binding protein Chain: B: PDB Molecule:flavohemoprotein; PDBTitle: crystal structure of the flavohemoglobin from alcaligenes eutrophus at2 1.75 a resolution 3 c1krhA_ 100.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:benzoate 1,2-dioxygenase reductase; PDBTitle: x-ray stucture of benzoate dioxygenase reductase 4 c2r6hC_ 100.0 20 PDB header:oxidoreductase Chain: C: PDB Molecule:nadh:ubiquinone oxidoreductase, na translocating, f PDBTitle: crystal structure of the domain comprising the nad binding and the fad2 binding regions of the nadh:ubiquinone oxidoreductase, na3 translocating, f subunit from porphyromonas gingivalis 5 c2eixA_ 100.0 22 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-cytochrome b5 reductase; PDBTitle: the structure of physarum polycephalum cytochrome b5 reductase 6 c1tvcA_ 100.0 23 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase component c; PDBTitle: fad and nadh binding domain of methane monooxygenase2 reductase from methylococcus capsulatus (bath) 7 c3fpkB_ 100.0 18 PDB header:flavoprotein, oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of ferredoxin-nadp reductase from salmonella2 typhimurium 8 c2ok8D_ 100.0 17 PDB header:oxidoreductase Chain: D: PDB Molecule:putative ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp+ reductase from plasmodium falciparum 9 c1a8pA_ 100.0 13 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph\:ferredoxin oxidoreductase; PDBTitle: ferredoxin reductase from azotobacter vinelandii 10 c2bgjB_ 100.0 14 PDB header:oxidoreductase Chain: B: PDB Molecule:ferredoxin-nadp(h) reductase; PDBTitle: x-ray structure of the ferredoxin-nadp(h) reductase from2 rhodobacter capsulatus at 2.1 angstroms 11 c1fncA_ 100.0 20 PDB header:oxidoreductase (nadp+(a),ferredoxin(a)) Chain: A: PDB Molecule:ferredoxin-nadp+ reductase; PDBTitle: refined crystal structure of spinach ferredoxin reductase2 at 1.7 angstroms resolution: oxidized, reduced, and 2'-3 phospho-5'-amp bound states 12 c1umkA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:nadh-cytochrome b5 reductase; PDBTitle: the structure of human erythrocyte nadh-cytochrome b52 reductase 13 c2piaA_ 100.0 22 PDB header:reductase Chain: A: PDB Molecule:phthalate dioxygenase reductase; PDBTitle: phthalate dioxygenase reductase: a modular structure for2 electron transfer from pyridine nucleotides to [2fe-2s] 14 c1qfjD_ 100.0 16 PDB header:oxidoreductase Chain: D: PDB Molecule:protein (flavin reductase); PDBTitle: crystal structure of nad(p)h:flavin oxidoreductase from escherichia2 coli 15 c1qgyA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp+ reductase; PDBTitle: ferredoxin:nadp+ reductase mutant with lys 75 replaced by glu (k75e) 16 c2b5oA_ 100.0 20 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin--nadp reductase; PDBTitle: ferredoxin-nadp reductase 17 c1jb9A_ 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: crystal structure of the ferredoxin:nadp+ reductase from maize root at2 1.7 angstroms 18 c1cneA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:nitrate reductase; PDBTitle: structural studies on corn nitrate reductase: refined2 structure of the cytochrome b reductase fragment at 2.53 angstroms, its adp complex and an active site mutant and4 modeling of the cytochrome b domain 19 c2rc5D_ 100.0 21 PDB header:oxidoreductase Chain: D: PDB Molecule:ferredoxin-nadp reductase; PDBTitle: refined structure of fnr from leptospira interrogans 20 d1gvha1 100.0 100 Fold:Globin-like Superfamily:Globin-like Family:Globins 21 c1ep3B_ not modelled 100.0 19 PDB header:oxidoreductase Chain: B: PDB Molecule:dihydroorotate dehydrogenase b (pyrk subunit); PDBTitle: crystal structure of lactococcus lactis dihydroorotate dehydrogenase2 b. data collected under cryogenic conditions. 22 d1cqxa1 not modelled 100.0 47 Fold:Globin-like Superfamily:Globin-like Family:Globins 23 c2gpjA_ not modelled 100.0 10 PDB header:fad-binding protein Chain: A: PDB Molecule:siderophore-interacting protein; PDBTitle: crystal structure of a siderophore-interacting protein (sputcn32_0076)2 from shewanella putrefaciens cn-32 at 2.20 a resolution 24 c2wy4A_ not modelled 99.9 38 PDB header:oxygen transport Chain: A: PDB Molecule:single domain haemoglobin; PDBTitle: structure of bacterial globin from campylobacter jejuni at2 1.35 a resolution 25 d1gvha3 not modelled 99.9 100 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 26 d1vhba_ not modelled 99.9 48 Fold:Globin-like Superfamily:Globin-like Family:Globins 27 c1o1nA_ not modelled 99.9 18 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin alpha chain; PDBTitle: deoxy hemoglobin (a-glyglygly-c:v1m,l29w; b,d:v1m) 28 c1tllA_ not modelled 99.9 20 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase, brain; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase2 reductase module at 2.3 a resolution. 29 c1f20A_ not modelled 99.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:nitric-oxide synthase; PDBTitle: crystal structure of rat neuronal nitric-oxide synthase fad/nadp+2 domain at 1.9a resolution. 30 c1ddiA_ not modelled 99.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:sulfite reductase [nadph] flavoprotein alpha- PDBTitle: crystal structure of sir-fp60 31 c3pt8B_ not modelled 99.9 18 PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin iii; PDBTitle: structure of hbii-iii-cn from lucina pectinata at ph 5.0 32 c2olpB_ not modelled 99.9 17 PDB header:oxygen storage/transport Chain: B: PDB Molecule:hemoglobin ii; PDBTitle: structure and ligand selection of hemoglobin ii from lucina pectinata 33 d1cqxa3 not modelled 99.9 37 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Flavohemoglobin, C-terminal domain 34 d1mbaa_ not modelled 99.9 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 35 c3s1jC_ not modelled 99.9 22 PDB header:oxygen transport, oxygen storage Chain: C: PDB Molecule:hemoglobin-like flavoprotein; PDBTitle: crystal structure of acetate-bound hell's gate globin i 36 c1j9zB_ not modelled 99.9 16 PDB header:oxidoreductase Chain: B: PDB Molecule:nadph-cytochrome p450 reductase; PDBTitle: cypor-w677g 37 d1scta_ not modelled 99.9 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 38 c1yhuJ_ not modelled 99.9 13 PDB header:oxygen storage/transport Chain: J: PDB Molecule:giant hemoglobins b chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits. 39 d1hbga_ not modelled 99.9 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 40 c2qtzA_ not modelled 99.9 14 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine synthase reductase; PDBTitle: crystal structure of the nadp+-bound fad-containing fnr-like module of2 human methionine synthase reductase 41 d1qpwa_ not modelled 99.9 20 Fold:Globin-like Superfamily:Globin-like Family:Globins 42 d1sctb_ not modelled 99.9 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 43 d1tvca2 not modelled 99.9 20 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 44 d1jl6a_ not modelled 99.9 17 Fold:Globin-like Superfamily:Globin-like Family:Globins 45 c3qftA_ not modelled 99.9 16 PDB header:oxidoreductase Chain: A: PDB Molecule:nadph--cytochrome p450 reductase; PDBTitle: crystal structure of nadph-cytochrome p450 reductase (fad/nadph domain2 and r457h mutant) 46 d1gcvb_ not modelled 99.9 14 Fold:Globin-like Superfamily:Globin-like Family:Globins 47 c2zs0A_ not modelled 99.9 13 PDB header:oxygen storage, oxygen transport Chain: A: PDB Molecule:extracellular giant hemoglobin major globin subunit a1; PDBTitle: structural basis for the heterotropic and homotropic interactions of2 invertebrate giant hemoglobin 48 d3d1ka1 not modelled 99.9 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 49 d1cg5a_ not modelled 99.9 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 50 d1itha_ not modelled 99.9 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 51 c2c0kB_ not modelled 99.9 13 PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin; PDBTitle: the structure of hemoglobin from the botfly gasterophilus2 intestinalis 52 d1a4fa_ not modelled 99.9 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 53 d1outa_ not modelled 99.9 20 Fold:Globin-like Superfamily:Globin-like Family:Globins 54 d1gcva_ not modelled 99.9 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 55 d1b0ba_ not modelled 99.9 17 Fold:Globin-like Superfamily:Globin-like Family:Globins 56 c1ut0A_ not modelled 99.9 17 PDB header:oxygen transport Chain: A: PDB Molecule:cytoglobin; PDBTitle: crystal structure of cytoglobin: the fourth globin type2 discovered in man displays heme hexa-coordination 57 d1urva_ not modelled 99.9 17 Fold:Globin-like Superfamily:Globin-like Family:Globins 58 c3bomC_ not modelled 99.9 19 PDB header:oxygen storage/transport Chain: C: PDB Molecule:hemoglobin subunit alpha-4; PDBTitle: crystal structure of trout hemoglobin at 1.35 angstrom2 resolution 59 d1lhta_ not modelled 99.9 17 Fold:Globin-like Superfamily:Globin-like Family:Globins 60 d3sdha_ not modelled 99.9 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 61 d1hlba_ not modelled 99.9 20 Fold:Globin-like Superfamily:Globin-like Family:Globins 62 c2d2mB_ not modelled 99.9 12 PDB header:oxygen storage/transport Chain: B: PDB Molecule:giant hemoglobin, a2(a5) globin chain; PDBTitle: structure of an extracellular giant hemoglobin of the2 gutless beard worm oligobrachia mashikoi 63 d2d5xa1 not modelled 99.9 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 64 d1x9fb_ not modelled 99.9 11 Fold:Globin-like Superfamily:Globin-like Family:Globins 65 d1jl7a_ not modelled 99.9 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 66 d1mwca_ not modelled 99.9 17 Fold:Globin-like Superfamily:Globin-like Family:Globins 67 d1wmua_ not modelled 99.9 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 68 c3mkbD_ not modelled 99.9 14 PDB header:oxygen storage, oxygen transport Chain: D: PDB Molecule:hemoglobin subunit beta; PDBTitle: crystal structure determination of shortfin mako (isurus oxyrinchus)2 hemoglobin at 1.9 angstrom resolution 69 c1yhuA_ not modelled 99.9 18 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin a1 chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits. 70 d1v4wa_ not modelled 99.9 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 71 d1a6ma_ not modelled 99.9 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 72 c1yhuW_ not modelled 99.9 13 PDB header:oxygen storage/transport Chain: W: PDB Molecule:hemoglobin b1a chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits. 73 d1x9fd_ not modelled 99.9 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 74 d1spga_ not modelled 99.9 20 Fold:Globin-like Superfamily:Globin-like Family:Globins 75 c2bk9A_ not modelled 99.9 19 PDB header:oxygen transport Chain: A: PDB Molecule:cg9734-pa; PDBTitle: drosophila melanogaster globin 76 d1xq5a_ not modelled 99.9 20 Fold:Globin-like Superfamily:Globin-like Family:Globins 77 d1fhja_ not modelled 99.9 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 78 d1fsla_ not modelled 99.9 22 Fold:Globin-like Superfamily:Globin-like Family:Globins 79 d2gdma_ not modelled 99.9 22 Fold:Globin-like Superfamily:Globin-like Family:Globins 80 d1qfja2 not modelled 99.9 14 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Reductases 81 c3qqrA_ not modelled 99.9 19 PDB header:oxygen transport Chain: A: PDB Molecule:non-legume hemoglobin; PDBTitle: crystal structure of parasponia hemoglobin; differential heme2 coordination is linked to quaternary structure 82 d1mbsa_ not modelled 99.9 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 83 d1hbra_ not modelled 99.9 17 Fold:Globin-like Superfamily:Globin-like Family:Globins 84 d1x9fc_ not modelled 99.9 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 85 d2qssa1 not modelled 99.9 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 86 c1yhuX_ not modelled 99.9 9 PDB header:oxygen storage/transport Chain: X: PDB Molecule:hemoglobin b2 chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits. 87 d2mm1a_ not modelled 99.9 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 88 c2bpoA_ not modelled 99.9 21 PDB header:reductase Chain: A: PDB Molecule:nadph-cytochrom p450 reductase; PDBTitle: crystal structure of the yeast cpr triple mutant: d74g,2 y75f, k78a. 89 d1jebb_ not modelled 99.9 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 90 d1h97a_ not modelled 99.9 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 91 d1krha2 not modelled 99.9 24 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:Aromatic dioxygenase reductase-like 92 c2zs1D_ not modelled 99.9 12 PDB header:oxygen storage, oxygen transport Chain: D: PDB Molecule:extracellular giant hemoglobin major globin subunit b1; PDBTitle: structural basis for the heterotropic and homotropic interactions of2 invertebrate giant hemoglobin 93 c1x3kA_ not modelled 99.9 12 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin component v; PDBTitle: crystal structure of a hemoglobin component (ta-v) from2 tokunagayusurika akamusi 94 d1jeba_ not modelled 99.9 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 95 d1x9fa_ not modelled 99.8 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 96 d1it2a_ not modelled 99.8 13 Fold:Globin-like Superfamily:Globin-like Family:Globins 97 c2d2mC_ not modelled 99.8 11 PDB header:oxygen storage/transport Chain: C: PDB Molecule:giant hemoglobin, b2(c) globin chain; PDBTitle: structure of an extracellular giant hemoglobin of the2 gutless beard worm oligobrachia mashikoi 98 d2lhba_ not modelled 99.8 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 99 d1d8ua_ not modelled 99.8 17 Fold:Globin-like Superfamily:Globin-like Family:Globins 100 d1hlma_ not modelled 99.8 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 101 d1cg5b_ not modelled 99.8 13 Fold:Globin-like Superfamily:Globin-like Family:Globins 102 d1myta_ not modelled 99.8 14 Fold:Globin-like Superfamily:Globin-like Family:Globins 103 d2v1fa1 not modelled 99.8 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 104 d1q1fa_ not modelled 99.8 20 Fold:Globin-like Superfamily:Globin-like Family:Globins 105 d1oj6a_ not modelled 99.8 21 Fold:Globin-like Superfamily:Globin-like Family:Globins 106 d2d5xb1 not modelled 99.8 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 107 c2vywA_ not modelled 99.8 12 PDB header:oxygen binding Chain: A: PDB Molecule:hemoglobin; PDBTitle: hemoglobin (hb2) from trematode fasciola hepatica 108 d2qssb1 not modelled 99.8 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 109 d2dn3a1 not modelled 99.8 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 110 d1hdsa_ not modelled 99.8 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 111 d1gvha2 not modelled 99.8 100 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 112 c2wtgA_ not modelled 99.8 17 PDB header:oxygen transport Chain: A: PDB Molecule:globin-like protein; PDBTitle: high resolution 3d structure of c.elegans globin-like2 protein glb-1 113 d1i3da_ not modelled 99.8 17 Fold:Globin-like Superfamily:Globin-like Family:Globins 114 c1x46A_ not modelled 99.8 18 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin component vii; PDBTitle: crystal structure of a hemoglobin component (ta-vii) from2 tokunagayusurika akamusi 115 d1ch4a_ not modelled 99.8 16 Fold:Globin-like Superfamily:Globin-like Family:Globins 116 d1v4wb_ not modelled 99.8 13 Fold:Globin-like Superfamily:Globin-like Family:Globins 117 d1outb_ not modelled 99.8 17 Fold:Globin-like Superfamily:Globin-like Family:Globins 118 d1hbrb_ not modelled 99.8 18 Fold:Globin-like Superfamily:Globin-like Family:Globins 119 d1emya_ not modelled 99.8 19 Fold:Globin-like Superfamily:Globin-like Family:Globins 120 d1fhjb_ not modelled 99.8 21 Fold:Globin-like Superfamily:Globin-like Family:Globins

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0