PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1yhuJ_

Fold library id	PDB Header	Molecule	Title
c1yhuJ_	PDB header: oxygen storage/transport	Chain: J: PDB Molecule: giant hemoglobins b chain;	PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin2 reveals novel assembly of 24 subunits.

Links to external resources
Added to library: Tue Mar 16 13:57:18 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D Y V C G P L Q R L K V K R Q W A E A Y G S G N S R E E F G H F I W S H V F Q H S P A A R D M F K R V R G D N I H T P A F R A H A T R V L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S S T
G G G G G G G G G G T T T
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G L D M C I A L L D D E P V L N T Q L A H L A K Q H E T R G V E A A H Y D T V N H A V M M G V E N V I G S E V F D Q D A W K P C L N V I T N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S
S S S

. . . .

Sequence G I Q G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	Y	V	C	G	P	L	Q	R	L	K	V	K	R	Q	W	A	E	A	Y	G	S	G	N	S	R	E	E	F	G	H	F	I	W	S	H	V	F	Q	H	S	P	A	A	R	D	M	F	K	R	V	R	G	D	N	I	H	T	P	A	F	R	A	H	A	T	R	V	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T		S	S	S	T																	G	G	G	G	G	G	G	G	G	G	T	T	T		S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	L	D	M	C	I	A	L	L	D	D	E	P	V	L	N	T	Q	L	A	H	L	A	K	Q	H	E	T	R	G	V	E	A	A	H	Y	D	T	V	N	H	A	V	M	M	G	V	E	N	V	I	G	S	E	V	F	D	Q	D	A	W	K	P	C	L	N	V	I	T	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T																	S	S	S																								S	S	S
	.	.	.	.
Sequence	G	I	Q	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)