Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP11071
DateThu Jan 5 11:32:28 GMT 2012
Unique Job ID6c4c1230b88a96be

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3epsB_
Top template information
PDB header:transferase, hydrolase
Chain: B: PDB Molecule:isocitrate dehydrogenase kinase/phosphatase;
PDBTitle: the crystal structure of isocitrate dehydrogenase kinase/phosphatase2 from e. coli
Confidence and coverage
Confidence:100.0% Coverage: 97%
559 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQQAMKNRIHLYDHHVGL
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   .........70.........80.........90.........100.........110.........120
Sequence  VVEQLRCITNGQSTDAAFLLRVKEHYTRLLPDYPRFEIAESFFNSVYCRLFDHRSLTPER
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   .........130.........140.........150.........160.........170.........180
Sequence  LFIFSSQPERRFRTIPRPLAKDFHPDHGWESLLMRVISDLPLRLRWQNKSRDIHYIIRHL
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   .........190.........200.........210.........220.........230.........240
Sequence  TETLGTDNLAESHLQVANELFYRNKAAWLVGKLITPSGTLPFLLPIHQTDDGELFIDTCL
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?
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   .........250.........260.........270.........280.........290.........300
Sequence  TTTAEASIVFGFARSYFMVYAPLPAALVEWLREILPGKTTAELYMAIGCQKHAKTESYRE
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   .........310.........320.........330.........340.........350.........360
Sequence  YLVYLQGCNEQFIEAPGIRGMVMLVFTLPGFDRVFKVIKDRFAPQKEMSAAHVRACYQLV
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   .........370.........380.........390.........400.........410.........420
Sequence  KEHDRVGRMADTQEFENFVLEKRHISPALMELLLQEAAEKITDLGEQIVIRHLYIERRMV
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   .........430.........440.........450.........460.........470.........480
Sequence  PLNIWLEQVEGQQLRDAIEEYGNAIRQLAAANIFPGDMLFKNFGVTRHGRVVFYDYDEIC
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   .........490.........500.........510.........520.........530.........540
Sequence  YMTEVNFRDIPPPRYPEDELASEPWYSVSPGDVFPEEFRHWLCADPRIGPLFEEMHADLF
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???????
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   .........550.........560.........570........
Sequence  RADYWRALQNRIREGHVEDVYAYRRRQRFSVRYGEMLF
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????













?
?????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3eps chain B

3D model

Region: 2 - 574
Aligned: 559
Modelled: 573
Confidence: 100.0%
Identity: 99%
PDB header:transferase, hydrolase
Chain: B: PDB Molecule:isocitrate dehydrogenase kinase/phosphatase;
PDBTitle: the crystal structure of isocitrate dehydrogenase kinase/phosphatase2 from e. coli

Phyre2

PDB 2an7 chain A

3D model

Region: 419 - 457
Aligned: 39
Modelled: 39
Confidence: 60.7%
Identity: 33%
PDB header:dna binding protein
Chain: A: PDB Molecule:protein pard;
PDBTitle: solution structure of the bacterial antidote pard

Phyre2

PDB 1o5u chain A

3D model

Region: 456 - 514
Aligned: 50
Modelled: 59
Confidence: 49.4%
Identity: 22%
Fold: Double-stranded beta-helix
Superfamily: RmlC-like cupins
Family: Hypothetical protein TM1112

Phyre2

PDB 3pcs chain B

3D model

Region: 312 - 328
Aligned: 17
Modelled: 17
Confidence: 47.3%
Identity: 35%
PDB header:protein transport/transferase
Chain: B: PDB Molecule:espg;
PDBTitle: structure of espg-pak2 autoinhibitory ialpha3 helix complex

Phyre2

PDB 3es4 chain B

3D model

Region: 470 - 514
Aligned: 36
Modelled: 45
Confidence: 46.9%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold;
PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution

Phyre2

PDB 3myx chain A

3D model

Region: 468 - 514
Aligned: 38
Modelled: 47
Confidence: 40.7%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pspto_0244;
PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution

Phyre2

PDB 3rmi chain A

3D model

Region: 58 - 107
Aligned: 50
Modelled: 50
Confidence: 39.2%
Identity: 16%
PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase protein;
PDBTitle: crystal structure of chorismate mutase from bartonella henselae str.2 houston-1 in complex with malate

Phyre2

PDB 3hm5 chain A

3D model

Region: 331 - 363
Aligned: 33
Modelled: 33
Confidence: 38.0%
Identity: 36%
PDB header:transcription
Chain: A: PDB Molecule:dna methyltransferase 1-associated protein 1;
PDBTitle: sant domain of human dna methyltransferase 1 associated2 protein 1

Phyre2

PDB 3hzp chain A

3D model

Region: 321 - 339
Aligned: 19
Modelled: 19
Confidence: 36.5%
Identity: 53%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution

Phyre2

PDB 1nvp chain B

3D model

Region: 52 - 90
Aligned: 39
Modelled: 39
Confidence: 35.0%
Identity: 23%
PDB header:transcription/dna
Chain: B: PDB Molecule:transcription initiation factor iia alpha chain;
PDBTitle: human tfiia/tbp/dna complex

Phyre2

PDB 1nvp chain B

3D model

Region: 52 - 90
Aligned: 39
Modelled: 39
Confidence: 35.0%
Identity: 23%
Fold: Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily: Transcription factor IIA (TFIIA), alpha-helical domain
Family: Transcription factor IIA (TFIIA), alpha-helical domain

Phyre2

PDB 1nh2 chain B

3D model

Region: 52 - 92
Aligned: 41
Modelled: 41
Confidence: 34.3%
Identity: 22%
Fold: Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily: Transcription factor IIA (TFIIA), alpha-helical domain
Family: Transcription factor IIA (TFIIA), alpha-helical domain

Phyre2

PDB 1dwk chain A domain 2

3D model

Region: 436 - 466
Aligned: 31
Modelled: 29
Confidence: 32.7%
Identity: 19%
Fold: Cyanase C-terminal domain
Superfamily: Cyanase C-terminal domain
Family: Cyanase C-terminal domain

Phyre2

PDB 2pyt chain A domain 1

3D model

Region: 474 - 484
Aligned: 11
Modelled: 7
Confidence: 30.1%
Identity: 45%
Fold: Double-stranded beta-helix
Superfamily: RmlC-like cupins
Family: EutQ-like

Phyre2

PDB 1oe4 chain A

3D model

Region: 265 - 321
Aligned: 53
Modelled: 57
Confidence: 29.8%
Identity: 17%
Fold: Uracil-DNA glycosylase-like
Superfamily: Uracil-DNA glycosylase-like
Family: Single-strand selective monofunctional uracil-DNA glycosylase SMUG1

Phyre2

PDB 3ff6 chain D

3D model

Region: 346 - 370
Aligned: 25
Modelled: 25
Confidence: 27.7%
Identity: 28%
PDB header:ligase
Chain: D: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: human acc2 ct domain with cp-640186

Phyre2

PDB 2wk1 chain A

3D model

Region: 435 - 499
Aligned: 53
Modelled: 65
Confidence: 26.0%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:novp;
PDBTitle: structure of the o-methyltransferase novp

Phyre2

PDB 2b3f chain D

3D model

Region: 526 - 561
Aligned: 36
Modelled: 36
Confidence: 26.0%
Identity: 14%
PDB header:sugar binding protein
Chain: D: PDB Molecule:glucose-binding protein;
PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose

Phyre2

PDB 1zl8 chain A domain 1

3D model

Region: 168 - 202
Aligned: 35
Modelled: 35
Confidence: 25.2%
Identity: 29%
Fold: L27 domain
Superfamily: L27 domain
Family: L27 domain

Phyre2

PDB 3few chain X

3D model

Region: 273 - 291
Aligned: 19
Modelled: 19
Confidence: 24.2%
Identity: 42%
PDB header:immune system
Chain: X: PDB Molecule:colicin s4;
PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain

Phyre2
1

c3epsB_
2

c2an7A_
3

d1o5ua_
4

c3pcsB_
5

c3es4B_
6

c3myxA_
7

c3rmiA_
8

c3hm5A_
9

c3hzpA_
10

c1nvpB_
11

d1nvpb_
12

d1nh2b_
13

d1dwka2
14

d2pyta1
15

d1oe4a_
16

c3ff6D_
17

c2wk1A_
18

c2b3fD_
19

d1zl8a1
20

c3fewX_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3epsB_



100.0 99 PDB header:transferase, hydrolase
Chain: B: PDB Molecule:isocitrate dehydrogenase kinase/phosphatase;
PDBTitle: the crystal structure of isocitrate dehydrogenase kinase/phosphatase2 from e. coli
2c2an7A_



60.7 33 PDB header:dna binding protein
Chain: A: PDB Molecule:protein pard;
PDBTitle: solution structure of the bacterial antidote pard
3d1o5ua_



49.4 22 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:Hypothetical protein TM1112
4c3pcsB_



47.3 35 PDB header:protein transport/transferase
Chain: B: PDB Molecule:espg;
PDBTitle: structure of espg-pak2 autoinhibitory ialpha3 helix complex
5c3es4B_



46.9 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold;
PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution
6c3myxA_



40.7 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein pspto_0244;
PDBTitle: crystal structure of a pspto_0244 (protein with unknown function which2 belongs to pfam duf861 family) from pseudomonas syringae pv. tomato3 str. dc3000 at 1.30 a resolution
7c3rmiA_



39.2 16 PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase protein;
PDBTitle: crystal structure of chorismate mutase from bartonella henselae str.2 houston-1 in complex with malate
8c3hm5A_



38.0 36 PDB header:transcription
Chain: A: PDB Molecule:dna methyltransferase 1-associated protein 1;
PDBTitle: sant domain of human dna methyltransferase 1 associated2 protein 1
9c3hzpA_



36.5 53 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntf2-like protein of unknown function;
PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution
10c1nvpB_



35.0 23 PDB header:transcription/dna
Chain: B: PDB Molecule:transcription initiation factor iia alpha chain;
PDBTitle: human tfiia/tbp/dna complex
11d1nvpb_



35.0 23 Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
12d1nh2b_



34.3 22 Fold:Transcription factor IIA (TFIIA), alpha-helical domain
Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain
Family:Transcription factor IIA (TFIIA), alpha-helical domain
13d1dwka2



32.7 19 Fold:Cyanase C-terminal domain
Superfamily:Cyanase C-terminal domain
Family:Cyanase C-terminal domain
14d2pyta1



30.1 45 Fold:Double-stranded beta-helix
Superfamily:RmlC-like cupins
Family:EutQ-like
15d1oe4a_



29.8 17 Fold:Uracil-DNA glycosylase-like
Superfamily:Uracil-DNA glycosylase-like
Family:Single-strand selective monofunctional uracil-DNA glycosylase SMUG1
16c3ff6D_



27.7 28 PDB header:ligase
Chain: D: PDB Molecule:acetyl-coa carboxylase 2;
PDBTitle: human acc2 ct domain with cp-640186
17c2wk1A_



26.0 26 PDB header:transferase
Chain: A: PDB Molecule:novp;
PDBTitle: structure of the o-methyltransferase novp
18c2b3fD_



26.0 14 PDB header:sugar binding protein
Chain: D: PDB Molecule:glucose-binding protein;
PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose
19d1zl8a1



25.2 29 Fold:L27 domain
Superfamily:L27 domain
Family:L27 domain
20c3fewX_



24.2 42 PDB header:immune system
Chain: X: PDB Molecule:colicin s4;
PDBTitle: structure and function of colicin s4, a colicin with a2 duplicated receptor binding domain
21c3ic7A_



not modelled 22.8 8 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator of gntr family2 from bacteroides thetaiotaomicron
22c2w7yA_



not modelled 22.7 22 PDB header:sugar-binding protein
Chain: A: PDB Molecule:probable sugar abc transporter, sugar-binding
PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide.
23c2og5A_



not modelled 22.3 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative oxygenase;
PDBTitle: crystal structure of asparagine oxygenase (asno)
24c3kpaB_



not modelled 22.2 26 PDB header:ligase
Chain: B: PDB Molecule:probable ubiquitin fold modifier conjugating enzyme;
PDBTitle: ubiquitin fold modifier conjugating enzyme from leishmania major2 (probable)
25d1f3va_



not modelled 21.5 19 Fold:Ferredoxin-like
Superfamily:TRADD, N-terminal domain
Family:TRADD, N-terminal domain
26c3ckxA_



not modelled 21.1 19 PDB header:transferase
Chain: A: PDB Molecule:serine/threonine-protein kinase 24;
PDBTitle: crystal structure of sterile 20-like kinase 3 (mst3, stk24)2 in complex with staurosporine
27c3nquA_



not modelled 20.8 16 PDB header:dna binding protein
Chain: A: PDB Molecule:histone h3-like centromeric protein a;
PDBTitle: crystal structure of partially trypsinized (cenp-a/h4)2 heterotetramer
28d2gtvx1



not modelled 20.6 10 Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:monomeric chorismate mutase
29c1rm1C_



not modelled 20.3 23 PDB header:transcription/dna
Chain: C: PDB Molecule:transcription initiation factor iia large chain;
PDBTitle: structure of a yeast tfiia/tbp/tata-box dna complex
30c2z8fB_



not modelled 20.0 19 PDB header:sugar binding protein
Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate-
PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose
31c3i3vC_



not modelled 19.8 14 PDB header:transport protein
Chain: C: PDB Molecule:probable secreted solute-binding lipoprotein;
PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor
32c2l0rA_



not modelled 19.4 21 PDB header:hydrolase,toxin
Chain: A: PDB Molecule:lethal factor;
PDBTitle: conformational dynamics of the anthrax lethal factor catalytic center
33d1ppjw_



not modelled 18.8 7 Fold:Single transmembrane helix
Superfamily:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
Family:Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
34c2hjvB_



not modelled 18.7 14 PDB header:hydrolase
Chain: B: PDB Molecule:atp-dependent rna helicase dbpa;
PDBTitle: structure of the second domain (residues 207-368) of the2 bacillus subtilis yxin protein
35c3koxA_



not modelled 18.1 50 PDB header:metal binding protein
Chain: A: PDB Molecule:d-ornithine aminomutase e component;
PDBTitle: crystal structure of ornithine 4,5 aminomutase in complex with 2,4-2 diaminobutyrate (anaerobic)
36c3lj4i_



not modelled 17.3 20 PDB header:viral protein
Chain: I: PDB Molecule:portal protein;
PDBTitle: bacteriophage p22 portal protein bound to middle tail factor gp4. this2 file contain the first biological assembly
37d1p3ie_



not modelled 17.3 13 Fold:Histone-fold
Superfamily:Histone-fold
Family:Nucleosome core histones
38d1miua1



not modelled 17.2 33 Fold:BRCA2 helical domain
Superfamily:BRCA2 helical domain
Family:BRCA2 helical domain
39c2iv1J_



not modelled 16.7 19 PDB header:lyase
Chain: J: PDB Molecule:cyanate hydratase;
PDBTitle: site directed mutagenesis of key residues involved in the2 catalytic mechanism of cyanase
40d1ckma2



not modelled 16.6 23 Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:mRNA capping enzyme
41d2ihoa2



not modelled 16.4 26 Fold:Cysteine proteinases
Superfamily:Cysteine proteinases
Family:MOA C-terminal domain-like
42d2ff4a2



not modelled 16.2 5 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:BTAD-like
43c3bcwB_



not modelled 16.1 31 PDB header:unknown function
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a duf861 family protein with a rmlc-like cupin2 fold (bb1179) from bordetella bronchiseptica rb50 at 1.60 a3 resolution
44d1pc2a_



not modelled 15.5 22 Fold:alpha-alpha superhelix
Superfamily:TPR-like
Family:Tetratricopeptide repeat (TPR)
45d1t5ia_



not modelled 15.3 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
46c3oqhB_



not modelled 15.2 23 PDB header:ligase
Chain: B: PDB Molecule:putative uncharacterized protein yvmc;
PDBTitle: crystal structure of b. licheniformis cdps yvmc-blic
47c2dnrA_



not modelled 15.2 35 PDB header:rna binding protein
Chain: A: PDB Molecule:synaptojanin-1;
PDBTitle: solution structure of rna binding domain in synaptojanin 1
48d2h9ec1



not modelled 15.1 33 Fold:Serine protease inhibitors
Superfamily:Serine protease inhibitors
Family:ATI-like
49d1mvfd_



not modelled 14.5 21 Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Kis/PemI addiction antidote
50c3ls1A_



not modelled 14.3 15 PDB header:photosynthesis
Chain: A: PDB Molecule:sll1638 protein;
PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+
51c2ihoA_



not modelled 14.3 26 PDB header:sugar binding protein
Chain: A: PDB Molecule:lectin;
PDBTitle: crystal structure of moa, a lectin from the mushroom marasmius oreades2 in complex with the trisaccharide gal(1,3)gal(1,4)glcnac
52c2a8vA_



not modelled 14.1 24 PDB header:protein/rna
Chain: A: PDB Molecule:rna binding domain of rho transcription
PDBTitle: rho transcription termination factor/rna complex
53d2e29a1



not modelled 13.8 38 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:GUCT domain
54c2vwiC_



not modelled 13.6 14 PDB header:transferase
Chain: C: PDB Molecule:serine/threonine-protein kinase osr1;
PDBTitle: structure of the osr1 kinase, a hypertension drug target
55d1a62a2



not modelled 13.4 24 Fold:OB-fold
Superfamily:Nucleic acid-binding proteins
Family:Cold shock DNA-binding domain-like
56d2enda_



not modelled 13.2 15 Fold:T4 endonuclease V
Superfamily:T4 endonuclease V
Family:T4 endonuclease V
57c2qbvA_



not modelled 13.1 20 PDB header:isomerase
Chain: A: PDB Molecule:chorismate mutase;
PDBTitle: crystal structure of intracellular chorismate mutase from2 mycobacterium tuberculosis
58c3dkqB_



not modelled 12.9 22 PDB header:oxidoreductase
Chain: B: PDB Molecule:pkhd-type hydroxylase sbal_3634;
PDBTitle: crystal structure of putative oxygenase (yp_001051978.1) from2 shewanella baltica os155 at 2.26 a resolution
59c2q6tB_



not modelled 12.9 10 PDB header:hydrolase
Chain: B: PDB Molecule:dnab replication fork helicase;
PDBTitle: crystal structure of the thermus aquaticus dnab monomer
60d1k28d2



not modelled 12.9 36 Fold:Phage tail proteins
Superfamily:Phage tail proteins
Family:Baseplate protein-like
61d1ht6a2



not modelled 12.8 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
62c1yt8A_



not modelled 12.6 35 PDB header:transferase
Chain: A: PDB Molecule:thiosulfate sulfurtransferase;
PDBTitle: crystal structure of thiosulfate sulfurtransferase from pseudomonas2 aeruginosa
63c3fgrA_



not modelled 12.6 22 PDB header:hydrolase
Chain: A: PDB Molecule:putative phospholipase b-like 2 28 kda form;
PDBTitle: two chain form of the 66.3 kda protein at 1.8 angstroem
64d1z84a1



not modelled 12.5 26 Fold:HIT-like
Superfamily:HIT-like
Family:Hexose-1-phosphate uridylyltransferase
65c3qufB_



not modelled 12.4 28 PDB header:transport protein
Chain: B: PDB Molecule:extracellular solute-binding protein, family 1;
PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis
66c3iz5G_



not modelled 12.3 38 PDB header:ribosome
Chain: G: PDB Molecule:60s ribosomal protein l6 (l6e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
67c1tqmA_



not modelled 12.3 13 PDB header:ribosome
Chain: A: PDB Molecule:conserved hypothetical protein;
PDBTitle: crystal structure of a. fulgidus rio2 serine protein kinase bound to2 amppnp
68d2fp1a1



not modelled 12.0 8 Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Secreted chorismate mutase-like
69d2d8da1



not modelled 11.9 12 Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
70d1t56a2



not modelled 11.9 10 Fold:Tetracyclin repressor-like, C-terminal domain
Superfamily:Tetracyclin repressor-like, C-terminal domain
Family:Tetracyclin repressor-like, C-terminal domain
71d3dwya1



not modelled 11.8 9 Fold:Bromodomain-like
Superfamily:Bromodomain
Family:Bromodomain
72c2gbbA_



not modelled 11.7 8 PDB header:isomerase
Chain: A: PDB Molecule:putative chorismate mutase;
PDBTitle: crystal structure of secreted chorismate mutase from2 yersinia pestis
73d1ecma_



not modelled 11.5 9 Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Dimeric chorismate mutase
74c2xvtC_



not modelled 11.5 15 PDB header:membrane protein
Chain: C: PDB Molecule:receptor activity-modifying protein 2;
PDBTitle: structure of the extracellular domain of human ramp2
75d2ok5a4



not modelled 11.4 27 Fold:Complement control module/SCR domain
Superfamily:Complement control module/SCR domain
Family:Complement control module/SCR domain
76c3olhA_



not modelled 11.3 22 PDB header:transferase
Chain: A: PDB Molecule:3-mercaptopyruvate sulfurtransferase;
PDBTitle: human 3-mercaptopyruvate sulfurtransferase
77d1j03a_



not modelled 11.1 23 Fold:Cytochrome b5-like heme/steroid binding domain
Superfamily:Cytochrome b5-like heme/steroid binding domain
Family:Steroid-binding domain
78d1nz6a_



not modelled 11.1 22 Fold:Long alpha-hairpin
Superfamily:Chaperone J-domain
Family:Chaperone J-domain
79c2i58B_



not modelled 11.0 25 PDB header:sugar binding protein
Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein;
PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose
80d1cz5a1



not modelled 10.9 12 Fold:Double psi beta-barrel
Superfamily:ADC-like
Family:Cdc48 N-terminal domain-like
81c1x58A_



not modelled 10.9 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein 4930532d21rik;
PDBTitle: solution structures of the myb-like dna binding domain of2 4930532d21rik protein
82d1y74a1



not modelled 10.8 19 Fold:L27 domain
Superfamily:L27 domain
Family:L27 domain
83c3r9jD_



not modelled 10.7 12 PDB header:cell cycle,hydrolase/cell cycle
Chain: D: PDB Molecule:cell division topological specificity factor;
PDBTitle: 4.3a resolution structure of a mind-mine(i24n) protein complex
84d1njha_



not modelled 10.7 20 Fold:Hypothetical protein YojF
Superfamily:Hypothetical protein YojF
Family:Hypothetical protein YojF
85d1w07a2



not modelled 10.7 2 Fold:Bromodomain-like
Superfamily:Acyl-CoA dehydrogenase C-terminal domain-like
Family:acyl-CoA oxidase C-terminal domains
86c1qrjB_



not modelled 10.7 9 PDB header:viral protein
Chain: B: PDB Molecule:htlv-i capsid protein;
PDBTitle: solution structure of htlv-i capsid protein
87c2r5uD_



not modelled 10.6 17 PDB header:hydrolase
Chain: D: PDB Molecule:replicative dna helicase;
PDBTitle: crystal structure of the n-terminal domain of dnab helicase from2 mycobacterium tuberculosis
88c3kvpB_



not modelled 10.6 33 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein ymzc;
PDBTitle: crystal structure of uncharacterized protein ymzc precursor2 from bacillus subtilis, northeast structural genomics3 consortium target sr378a
89d1f35a_



not modelled 10.6 21 Fold:Olfactory marker protein
Superfamily:Olfactory marker protein
Family:Olfactory marker protein
90d1wb8a1



not modelled 10.5 15 Fold:Long alpha-hairpin
Superfamily:Fe,Mn superoxide dismutase (SOD), N-terminal domain
Family:Fe,Mn superoxide dismutase (SOD), N-terminal domain
91c2uvgA_



not modelled 10.4 19 PDB header:sugar-binding protein
Chain: A: PDB Molecule:abc type periplasmic sugar-binding protein;
PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica
92d1hv8a2



not modelled 10.4 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
93d1xr7a_



not modelled 10.3 14 Fold:DNA/RNA polymerases
Superfamily:DNA/RNA polymerases
Family:RNA-dependent RNA-polymerase
94d1jwea_



not modelled 10.3 13 Fold:N-terminal domain of DnaB helicase
Superfamily:N-terminal domain of DnaB helicase
Family:N-terminal domain of DnaB helicase
95d2in1a1



not modelled 10.3 33 Fold:UBC-like
Superfamily:UBC-like
Family:UFC1-like
96d1ufwa_



not modelled 10.1 17 Fold:Ferredoxin-like
Superfamily:RNA-binding domain, RBD
Family:Canonical RBD
97c3i1lC_



not modelled 10.1 25 PDB header:hydrolase
Chain: C: PDB Molecule:hemagglutinin-esterase protein;
PDBTitle: structure of porcine torovirus hemagglutinin-esterase in complex with2 its receptor
98c1fi8E_



not modelled 9.9 36 PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:ecotin;
PDBTitle: rat granzyme b [n66q] complexed to ecotin [81-84 iepd]
99d1ub4c_



not modelled 9.9 15 Fold:Double-split beta-barrel
Superfamily:AbrB/MazE/MraZ-like
Family:Kis/PemI addiction antidote

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0