Email l.a.kelley@imperial.ac.uk Description P76162 Date Thu Jan 5 12:19:57 GMT 2012 Unique Job ID 6bcbd13fd902e966

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2qgpA_ 88.0 23 PDB header:hydrolase Chain: A: PDB Molecule:hnh endonuclease; PDBTitle: x-ray structure of the nhn endonuclease from geobacter2 metallireducens. northeast structural genomics consortium3 target gmr87. 2 c3plwA_ 64.7 27 PDB header:hydrolase Chain: A: PDB Molecule:recombination enhancement function protein; PDBTitle: ref protein from p1 bacteriophage 3 c3dzuD_ 63.0 28 PDB header:transcription/dna Chain: D: PDB Molecule:peroxisome proliferator-activated receptor gamma; PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with bvt.13, 9-cis retinoic acid and ncoa2 peptide 4 c3g27A_ 45.6 27 PDB header:protein binding Chain: A: PDB Molecule:82 prophage-derived uncharacterized protein ybco; PDBTitle: structure of a putative bacteriophage protein from escherichia coli2 str. k-12 substr. mg1655 5 c3alrA_ 42.8 22 PDB header:metal binding protein Chain: A: PDB Molecule:nanos protein; PDBTitle: crystal structure of nanos 6 d1dsza_ 39.0 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 7 d1r4ra_ 38.0 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 8 d1lata_ 37.8 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 9 c2o2kA_ 36.5 16 PDB header:transferase Chain: A: PDB Molecule:methionine synthase; PDBTitle: crystal structure of the activation domain of human2 methionine synthase isoform/mutant d963e/k1071n 10 d1hraa_ 36.4 27 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 11 d1glua_ 36.2 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 12 d1hcqa_ 35.4 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 13 c1xx6B_ 34.8 29 PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: x-ray structure of clostridium acetobutylicum thymidine kinase with2 adp. northeast structural genomics target car26. 14 d2b8ta2 31.1 26 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 15 d1r0oa_ 30.3 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 16 c1w4rC_ 29.4 17 PDB header:transferase Chain: C: PDB Molecule:thymidine kinase; PDBTitle: structure of a type ii thymidine kinase with bound dttp 17 c3ds8A_ 29.2 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin2722 protein; PDBTitle: the crysatl structure of the gene lin2722 products from listeria2 innocua 18 d2nllb_ 28.7 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 19 d1ji3a_ 28.4 40 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 20 d1ei9a_ 27.7 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterases 21 c2hihB_ not modelled 27.3 47 PDB header:hydrolase Chain: B: PDB Molecule:lipase 46 kda form; PDBTitle: crystal structure of staphylococcus hyicus lipase 22 d1cita_ not modelled 26.6 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 23 d1ku0a_ not modelled 26.6 40 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 24 c2qp2A_ not modelled 24.8 25 PDB header:unknown function Chain: A: PDB Molecule:unknown protein; PDBTitle: structure of a macpf/perforin-like protein 25 c2zkqn_ not modelled 23.2 36 PDB header:ribosomal protein/rna Chain: N: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 26 d1xbta2 not modelled 23.2 28 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 27 d1jmkc_ not modelled 23.2 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases 28 c2eblA_ not modelled 22.5 24 PDB header:transcription Chain: A: PDB Molecule:coup transcription factor 1; PDBTitle: solution structure of the zinc finger, c4-type domain of2 human coup transcription factor 1 29 c3e2iA_ not modelled 22.3 33 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from s. aureus 30 c2b8tA_ not modelled 21.7 45 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: crystal structure of thymidine kinase from u.urealyticum in2 complex with thymidine 31 c2p0pA_ not modelled 21.1 33 PDB header:metal binding protein Chain: A: PDB Molecule:alr1010 protein; PDBTitle: calcium binding protein in the free form 32 c3dzyA_ not modelled 20.7 33 PDB header:transcription/dna Chain: A: PDB Molecule:retinoic acid receptor rxr-alpha; PDBTitle: intact ppar gamma - rxr alpha nuclear receptor complex on dna bound2 with rosiglitazone, 9-cis retinoic acid and ncoa2 peptide 33 d1mo2a_ not modelled 20.0 29 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases 34 c1mo2A_ not modelled 20.0 29 PDB header:transferase Chain: A: PDB Molecule:erythronolide synthase, modules 5 and 6; PDBTitle: thioesterase domain from 6-deoxyerythronolide synthase2 (debs te), ph 8.5 35 c2xznN_ not modelled 20.0 27 PDB header:ribosome Chain: N: PDB Molecule:rps29e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 36 d1x3za1 not modelled 19.8 17 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 37 d1cvla_ not modelled 19.6 47 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 38 d1kb2a_ not modelled 19.5 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 39 c2envA_ not modelled 19.3 31 PDB header:transcription Chain: A: PDB Molecule:peroxisome proliferator-activated receptor delta; PDBTitle: solution sturcture of the c4-type zinc finger domain from2 human peroxisome proliferator-activated receptor delta 40 d1xkta_ not modelled 19.3 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterase domain of polypeptide, polyketide and fatty acid synthases 41 c3jyvN_ not modelled 19.1 27 PDB header:ribosome Chain: N: PDB Molecule:40s ribosomal protein s29(a); PDBTitle: structure of the 40s rrna and proteins and p/e trna for eukaryotic2 ribosome based on cryo-em map of thermomyces lanuginosus ribosome at3 8.9a resolution 42 c1bomB_ not modelled 19.1 31 PDB header:insulin-like brain-secretory peptide Chain: B: PDB Molecule:bombyxin-ii,bombyxin a-6; PDBTitle: three-dimensional structure of bombyxin-ii, an insulin-2 related brain-secretory peptide of the silkmoth bombyx3 mori: comparison with insulin and relaxin 43 d1ynwa1 not modelled 19.0 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 44 c3lcrA_ not modelled 18.8 47 PDB header:hydrolase Chain: A: PDB Molecule:tautomycetin biosynthetic pks; PDBTitle: thioesterase from tautomycetin biosynthhetic pathway 45 d2f4ma1 not modelled 18.4 36 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 46 d1r0na_ not modelled 18.1 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 47 d1r4ia_ not modelled 18.1 29 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 48 c1r4iA_ not modelled 18.1 29 PDB header:transcription/dna Chain: A: PDB Molecule:androgen receptor; PDBTitle: crystal structure of androgen receptor dna-binding domain2 bound to a direct repeat response element 49 d2h8pc1 not modelled 17.9 27 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 50 d1weoa_ not modelled 17.6 33 Fold:RING/U-box Superfamily:RING/U-box Family:RING finger domain, C3HC4 51 d1tcaa_ not modelled 17.3 19 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Fungal lipases 52 c2dllA_ not modelled 17.1 19 PDB header:cytokine Chain: A: PDB Molecule:interferon regulatory factor 4; PDBTitle: solution structure of the irf domain of human interferon2 regulator factors 4 53 d1dszb_ not modelled 16.9 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 54 d1uxoa_ not modelled 16.7 18 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:YdeN-like 55 c2yqpA_ not modelled 16.0 33 PDB header:gene regulation, hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx59; PDBTitle: solution structure of the zf-hit domain in dead (asp-glu-2 ala-asp) box polypeptide 59 56 d1lo1a_ not modelled 15.7 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 57 d1bdsa_ not modelled 15.6 46 Fold:Defensin-like Superfamily:Defensin-like Family:Defensin 58 d1kb6b_ not modelled 15.5 31 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 59 d1jbsa_ not modelled 14.9 44 Fold:Microbial ribonucleases Superfamily:Microbial ribonucleases Family:Ribotoxin 60 d4lipd_ not modelled 14.4 60 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 61 c3ahpA_ not modelled 13.8 25 PDB header:electron transport Chain: A: PDB Molecule:cuta1; PDBTitle: crystal structure of stable protein, cuta1, from a psychrotrophic2 bacterium shewanella sp. sib1 62 d1xx6a2 not modelled 13.7 63 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 63 c2ja1A_ not modelled 13.6 28 PDB header:transferase Chain: A: PDB Molecule:thymidine kinase; PDBTitle: thymidine kinase from b. cereus with ttp bound as phosphate2 donor. 64 d1ex9a_ not modelled 13.2 40 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Bacterial lipase 65 d2ccya_ not modelled 13.2 36 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 66 c2j0eA_ not modelled 13.1 9 PDB header:hydrolase Chain: A: PDB Molecule:6-phosphogluconolactonase; PDBTitle: three dimensional structure and catalytic mechanism of 6-2 phosphogluconolactonase from trypanosoma brucei 67 d1mqva_ not modelled 12.9 25 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 68 d2hfha_ not modelled 12.7 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain 69 d2bv3a4 not modelled 12.7 17 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:EF-G/eEF-2 domains III and V 70 c3bdvB_ not modelled 12.3 43 PDB header:hydrolase Chain: B: PDB Molecule:uncharacterized protein duf1234; PDBTitle: crystal structure of a putative yden-like hydrolase (eca3091) from2 pectobacterium atrosepticum scri1043 at 1.66 a resolution 71 c2orvB_ not modelled 12.2 18 PDB header:transferase Chain: B: PDB Molecule:thymidine kinase; PDBTitle: human thymidine kinase 1 in complex with tp4a 72 d1jw2a_ not modelled 12.1 47 Fold:Open three-helical up-and-down bundle Superfamily:Hemolysin expression modulating protein HHA Family:Hemolysin expression modulating protein HHA 73 c1pjaA_ not modelled 11.9 60 PDB header:hydrolase Chain: A: PDB Molecule:palmitoyl-protein thioesterase 2 precursor; PDBTitle: the crystal structure of palmitoyl protein thioesterase-2 reveals the2 basis for divergent substrate specificities of the two lysosomal3 thioesterases (ppt1 and ppt2) 74 d1pjaa_ not modelled 11.9 60 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Thioesterases 75 d1kbha_ not modelled 11.8 70 Fold:Nuclear receptor coactivator interlocking domain Superfamily:Nuclear receptor coactivator interlocking domain Family:Nuclear receptor coactivator interlocking domain 76 c2zyiB_ not modelled 11.8 29 PDB header:hydrolase Chain: B: PDB Molecule:lipase, putative; PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium 77 c3cbbA_ not modelled 11.6 46 PDB header:transcription/dna Chain: A: PDB Molecule:hepatocyte nuclear factor 4-alpha, dna binding PDBTitle: crystal structure of hepatocyte nuclear factor 4alpha in2 complex with dna: diabetes gene product 78 c1l7qA_ not modelled 11.6 29 PDB header:hydrolase Chain: A: PDB Molecule:cocaine esterase; PDBTitle: ser117ala mutant of bacterial cocaine esterase coce 79 d2nlla_ not modelled 11.6 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 80 d1nj1a2 not modelled 11.4 36 Fold:IF3-like Superfamily:C-terminal domain of ProRS Family:C-terminal domain of ProRS 81 c3mplA_ not modelled 11.4 17 PDB header:signaling protein Chain: A: PDB Molecule:virulence sensor protein bvgs; PDBTitle: crystal structure of bordetella pertussis bvgs vft2 domain (double2 mutant f375e/q461e) 82 c1qgeD_ not modelled 11.4 47 PDB header:hydrolase Chain: D: PDB Molecule:protein (triacylglycerol hydrolase); PDBTitle: new crystal form of pseudomonas glumae (formerly chromobacterium2 viscosum atcc 6918) lipase 83 d2hana1 not modelled 11.3 38 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 84 c2ri0B_ not modelled 11.1 19 PDB header:hydrolase Chain: B: PDB Molecule:glucosamine-6-phosphate deaminase; PDBTitle: crystal structure of glucosamine 6-phosphate deaminase (nagb) from s.2 mutans 85 c2rauA_ not modelled 11.1 27 PDB header:hydrolase Chain: A: PDB Molecule:putative esterase; PDBTitle: crystal structure of a putative lipase (np_343859.1) from sulfolobus2 solfataricus at 1.85 a resolution 86 c1dtcA_ not modelled 11.0 36 PDB header:toxin Chain: A: PDB Molecule:acetyl-delta-toxin; PDBTitle: delta-toxin and analogues as peptide models for protein ion2 channels 87 c2dtbA_ not modelled 11.0 36 PDB header:toxin Chain: A: PDB Molecule:delta-toxin; PDBTitle: delta-toxin and analogues as peptide models for protein ion2 channels 88 c2kamA_ not modelled 11.0 36 PDB header:toxin Chain: A: PDB Molecule:delta-hemolysin; PDBTitle: nmr structure of delta-toxin from staphylococcus aureus in2 cd3oh 89 c3lp5A_ not modelled 10.9 24 PDB header:hydrolase Chain: A: PDB Molecule:putative cell surface hydrolase; PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1 90 c3eswA_ not modelled 10.9 21 PDB header:hydrolase Chain: A: PDB Molecule:peptide-n(4)-(n-acetyl-beta-glucosaminyl)asparagine PDBTitle: complex of yeast pngase with glcnac2-iac. 91 c1r0nB_ not modelled 10.6 33 PDB header:transcription/dna Chain: B: PDB Molecule:ecdysone receptor; PDBTitle: crystal structure of heterodimeric ecdsyone receptor dna2 binding complex 92 c2d8zA_ not modelled 10.5 16 PDB header:signaling protein, structural protein Chain: A: PDB Molecule:four and a half lim domains 2; PDBTitle: solution structure of the third lim domain of four and a2 half lim domains protein 2 (fhl-2) 93 d1gqaa_ not modelled 10.5 25 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 94 d1bbha_ not modelled 10.3 25 Fold:Four-helical up-and-down bundle Superfamily:Cytochromes Family:Cytochrome c'-like 95 d2c52b1 not modelled 10.2 71 Fold:Nuclear receptor coactivator interlocking domain Superfamily:Nuclear receptor coactivator interlocking domain Family:Nuclear receptor coactivator interlocking domain 96 c1t98B_ not modelled 10.2 18 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of mukf(1-287) 97 c2h7xA_ not modelled 10.2 40 PDB header:hydrolase Chain: A: PDB Molecule:type i polyketide synthase pikaiv; PDBTitle: pikromycin thioesterase adduct with reduced triketide2 affinity label 98 d2hanb1 not modelled 10.0 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Nuclear receptor 99 d1lpbb2 not modelled 9.9 56 Fold:alpha/beta-Hydrolases Superfamily:alpha/beta-Hydrolases Family:Pancreatic lipase, N-terminal domain