Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	Q	Q	L	S	W	R	T	I	V	G	Y	S	L	G	D	V	A	N	N	F	A	F	A	M	G	A	L	F	L	L	S	Y	Y	T	D	V	A	G	V	G	A	A	A	A	G	T	M	L	L	L	V	R	V	F	D	A	F	A
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	V	F	A	G	R	V	V	D	S	V	N	T	R	W	G	K	F	R	P	F	L	L	F	G	T	A	P	L	M	I	F	S	V	L	V	F	W	V	P	T	D	W	S	H	G	S	K	V	V	Y	A	Y	L	T	Y	M	G	L	G
Secondary structure
SS confidence
Disorder																																										?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		L	C	Y	S	L	V	N	I	P	Y	G	S	L	A	T	A	M	T	Q	Q	P	Q	S	R	A	R	L	G	A	A	R	G	I	A	A	S	L	T	F	V	C	L	A	F	L	I	G	P	S	I	K	N	S	S	P	E	E	M	V	S
Secondary structure
SS confidence
Disorder																				?																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		V	Y	H	F	W	T	I	V	L	A	I	A	G	M	V	L	Y	F	I	C	F	K	S	T	R	E	N	V	V	R	I	V	A	Q	P	S	L	N	I	S	L	Q	T	L	K	R	N	R	P	L	F	M	L	C	I	G	A	L	C	V
Secondary structure
SS confidence
Disorder																										?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		L	I	S	T	F	A	V	S	A	S	S	L	F	Y	V	R	Y	V	L	N	D	T	G	L	F	T	V	L	V	L	V	Q	N	L	V	G	T	V	A	S	A	P	L	V	P	G	M	V	A	R	I	G	K	K	N	T	F	L	I	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		A	L	L	G	T	C	G	Y	L	L	F	F	W	V	S	V	W	S	L	P	V	A	L	V	A	L	A	I	A	S	I	G	Q	G	V	T	M	T	V	M	W	A	L	E	A	D	T	V	E	Y	G	E	Y	L	T	G	V	R	I	E
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		G	L	T	Y	S	L	F	S	F	T	R	K	C	G	Q	A	I	G	G	S	I	P	A	F	I	L	G	L	S	G	Y	I	A	N	Q	V	Q	T	P	E	V	I	M	G	I	R	T	S	I	A	L	V	P	C	G	F	M	L	L	A
Secondary structure
SS confidence
Disorder																																						?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.
Sequence		F	V	I	I	W	F	Y	P	L	T	D	K	K	F	K	E	I	V	V	E	I	D	N	R	K	K	V	Q	Q	Q	L	I	S	D	I	T	N
Secondary structure
SS confidence
Disorder																											?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1pv7 chain A Region: 3 - 444 Aligned: 414 Modelled: 420 Confidence: 99.9% Identity: 12% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: LacY-like proton/sugar symporter Phyre2 PDB 1pw4 chain A Region: 3 - 441 Aligned: 408 Modelled: 425 Confidence: 99.9% Identity: 13% Fold: MFS general substrate transporter Superfamily: MFS general substrate transporter Family: Glycerol-3-phosphate transporter Phyre2 PDB 2gfp chain A Region: 10 - 418 Aligned: 368 Modelled: 385 Confidence: 99.8% Identity: 12% PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Phyre2 PDB 3o7p chain A Region: 8 - 430 Aligned: 386 Modelled: 409 Confidence: 99.8% Identity: 13% PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) Phyre2 PDB 2xut chain C Region: 14 - 419 Aligned: 388 Modelled: 401 Confidence: 99.8% Identity: 11% PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. Phyre2 PDB 2f23 chain A domain 1 Region: 427 - 455 Aligned: 29 Modelled: 29 Confidence: 62.4% Identity: 10% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 1grj chain A domain 1 Region: 427 - 455 Aligned: 29 Modelled: 29 Confidence: 50.2% Identity: 24% Fold: Long alpha-hairpin Superfamily: GreA transcript cleavage protein, N-terminal domain Family: GreA transcript cleavage protein, N-terminal domain Phyre2 PDB 3qnq chain D Region: 373 - 449 Aligned: 77 Modelled: 77 Confidence: 49.6% Identity: 14% PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system Phyre2 PDB 1zxa chain B Region: 435 - 455 Aligned: 21 Modelled: 21 Confidence: 32.9% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia Phyre2 PDB 1by0 chain A Region: 431 - 455 Aligned: 25 Modelled: 25 Confidence: 29.6% Identity: 28% PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen Phyre2 PDB 2q7c chain C Region: 433 - 455 Aligned: 23 Modelled: 23 Confidence: 25.0% Identity: 22% PDB header:viral protein Chain: C: PDB Molecule:fusion protein between yeast variant gcn4 and PDBTitle: crystal structure of iqn17 Phyre2 PDB 1f6g chain A Region: 390 - 456 Aligned: 67 Modelled: 67 Confidence: 24.9% Identity: 13% Fold: Voltage-gated potassium channels Superfamily: Voltage-gated potassium channels Family: Voltage-gated potassium channels Phyre2 PDB 3hd6 chain A Region: 213 - 453 Aligned: 220 Modelled: 241 Confidence: 23.7% Identity: 7% PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg Phyre2 PDB 1oqw chain A Region: 408 - 454 Aligned: 47 Modelled: 47 Confidence: 20.4% Identity: 13% Fold: Pili subunits Superfamily: Pili subunits Family: Pilin Phyre2 PDB 1xmp chain A Region: 435 - 454 Aligned: 20 Modelled: 20 Confidence: 19.7% Identity: 10% Fold: Flavodoxin-like Superfamily: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family: N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Phyre2 PDB 2h8a chain A domain 1 Region: 404 - 457 Aligned: 54 Modelled: 54 Confidence: 17.4% Identity: 7% Fold: MAPEG domain-like Superfamily: MAPEG domain-like Family: MAPEG domain Phyre2 PDB 2pil chain A Region: 408 - 454 Aligned: 47 Modelled: 47 Confidence: 17.1% Identity: 9% Fold: Pili subunits Superfamily: Pili subunits Family: Pilin Phyre2 PDB 3jqh chain A Region: 430 - 454 Aligned: 25 Modelled: 22 Confidence: 13.8% Identity: 24% PDB header:sugar binding protein Chain: A: PDB Molecule:c-type lectin domain family 4 member m; PDBTitle: structure of the neck region of the glycan-binding receptor2 dc-signr Phyre2 PDB 1ji6 chain A domain 3 Region: 374 - 457 Aligned: 64 Modelled: 67 Confidence: 13.3% Identity: 14% Fold: Toxins' membrane translocation domains Superfamily: delta-Endotoxin (insectocide), N-terminal domain Family: delta-Endotoxin (insectocide), N-terminal domain Phyre2 PDB 2hjm chain B Region: 409 - 450 Aligned: 42 Modelled: 42 Confidence: 12.8% Identity: 10% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein pf1176; PDBTitle: crystal structure of a singleton protein pf1176 from p. furiosus Phyre2 1 d1pv7a_ 2 d1pw4a_ 3 c2gfpA_ 4 c3o7pA_ 5 c2xutC_ 6 d2f23a1 7 d1grja1 8 c3qnqD_ 9 c1zxaB_ 10 c1by0A_ 11 c2q7cC_ 12 d1f6ga_ 13 c3hd6A_ 14 d1oqwa_ 15 d1xmpa_ 16 d2h8aa1 17 d2pila_ 18 c3jqhA_ 19 d1ji6a3 20 c2hjmB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1pv7a_ 99.9 12 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:LacY-like proton/sugar symporter 2 d1pw4a_ 99.9 13 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 3 c2gfpA_ 99.8 12 PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli 4 c3o7pA_ 99.8 13 PDB header:transport protein Chain: A: PDB Molecule:l-fucose-proton symporter; PDBTitle: crystal structure of the e.coli fucose:proton symporter, fucp (n162a) 5 c2xutC_ 99.8 11 PDB header:transport protein Chain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter. 6 d2f23a1 62.4 10 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 7 d1grja1 50.2 24 Fold:Long alpha-hairpin Superfamily:GreA transcript cleavage protein, N-terminal domain Family:GreA transcript cleavage protein, N-terminal domain 8 c3qnqD_ 49.6 14 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 9 c1zxaB_ 32.9 19 PDB header:transferase Chain: B: PDB Molecule:cgmp-dependent protein kinase 1, alpha isozyme; PDBTitle: solution structure of the coiled-coil domain of cgmp-2 dependent protein kinase ia 10 c1by0A_ 29.6 28 PDB header:rna binding protein Chain: A: PDB Molecule:protein (hepatitis delta antigen); PDBTitle: n-terminal leucine-repeat region of hepatitis delta antigen 11 c2q7cC_ 25.0 22 PDB header:viral protein Chain: C: PDB Molecule:fusion protein between yeast variant gcn4 and PDBTitle: crystal structure of iqn17 12 d1f6ga_ 24.9 13 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 13 c3hd6A_ 23.7 7 PDB header:membrane protein, transport protein Chain: A: PDB Molecule:ammonium transporter rh type c; PDBTitle: crystal structure of the human rhesus glycoprotein rhcg 14 d1oqwa_ 20.4 13 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 15 d1xmpa_ 19.7 10 Fold:Flavodoxin-like Superfamily:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) Family:N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) 16 d2h8aa1 17.4 7 Fold:MAPEG domain-like Superfamily:MAPEG domain-like Family:MAPEG domain 17 d2pila_ 17.1 9 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 18 c3jqhA_ 13.8 24 PDB header:sugar binding protein Chain: A: PDB Molecule:c-type lectin domain family 4 member m; PDBTitle: structure of the neck region of the glycan-binding receptor2 dc-signr 19 d1ji6a3 13.3 14 Fold:Toxins' membrane translocation domains Superfamily:delta-Endotoxin (insectocide), N-terminal domain Family:delta-Endotoxin (insectocide), N-terminal domain 20 c2hjmB_ 12.8 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein pf1176; PDBTitle: crystal structure of a singleton protein pf1176 from p. furiosus 21 d2ce7a1 not modelled 12.0 13 Fold:FtsH protease domain-like Superfamily:FtsH protease domain-like Family:FtsH protease domain-like 22 c1a92B_ not modelled 11.8 29 PDB header:leucine zipper Chain: B: PDB Molecule:delta antigen; PDBTitle: oligomerization domain of hepatitis delta antigen 23 c1m46B_ not modelled 11.7 29 PDB header:cell cycle protein Chain: B: PDB Molecule:iq4 motif from myo2p, a class v myosin; PDBTitle: crystal structure of mlc1p bound to iq4 of myo2p, a class v2 myosin 24 c2nuxB_ not modelled 11.5 35 PDB header:lyase Chain: B: PDB Molecule:2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate PDBTitle: 2-keto-3-deoxygluconate aldolase from sulfolobus acidocaldarius,2 native structure in p6522 at 2.5 a resolution 25 c2oqqB_ not modelled 11.5 16 PDB header:transcription Chain: B: PDB Molecule:transcription factor hy5; PDBTitle: crystal structure of hy5 leucine zipper homodimer from2 arabidopsis thaliana 26 c3eh0C_ not modelled 10.4 8 PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli 27 d1u69a_ not modelled 9.6 27 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:3-demethylubiquinone-9 3-methyltransferase 28 c2wl2B_ not modelled 9.2 11 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of n-terminal domain of gyra with the2 antibiotic simocyclinone d8 29 c2xseA_ not modelled 9.2 21 PDB header:oxidoreductase Chain: A: PDB Molecule:thymine dioxygenase jbp1; PDBTitle: the structural basis for recognition of j-base containing2 dna by a novel dna-binding domain in jbp1 30 c1c94B_ not modelled 8.8 15 PDB header:gene regulation Chain: B: PDB Molecule:retro-gcn4 leucine zipper; PDBTitle: reversing the sequence of the gcn4 leucine zipper does not2 affect its fold. 31 c2kncA_ not modelled 8.8 13 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 32 c1l4aE_ not modelled 8.7 22 PDB header:endocytosis/exocytosis Chain: E: PDB Molecule:synaphin a; PDBTitle: x-ray structure of the neuronal complexin/snare complex2 from the squid loligo pealei 33 c3s2xB_ not modelled 8.5 23 PDB header:transferase Chain: B: PDB Molecule:acetyl-coa synthase subunit alpha; PDBTitle: structure of acetyl-coenzyme a synthase alpha subunit c-terminal2 domain 34 d2ia9a1 not modelled 8.5 7 Fold:SpoVG-like Superfamily:SpoVG-like Family:SpoVG-like 35 d1ab4a_ not modelled 8.4 13 Fold:Type II DNA topoisomerase Superfamily:Type II DNA topoisomerase Family:Type II DNA topoisomerase 36 c2l5gA_ not modelled 8.3 9 PDB header:transcription regulator Chain: A: PDB Molecule:g protein pathway suppressor 2; PDBTitle: co-ordinates and 1h, 13c and 15n chemical shift assignments for the2 complex of gps2 53-90 and smrt 167-207 37 c1ji6A_ not modelled 8.1 14 PDB header:toxin Chain: A: PDB Molecule:pesticidial crystal protein cry3bb; PDBTitle: crystal structure of the insecticidal bacterial del2 endotoxin cry3bb1 bacillus thuringiensis 38 d2oara1 not modelled 8.1 18 Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel 39 c3sokB_ not modelled 7.9 17 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 40 d1ez4a2 not modelled 7.6 23 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 41 d1ykhb1 not modelled 7.4 8 Fold:Mediator hinge subcomplex-like Superfamily:Mediator hinge subcomplex-like Family:CSE2-like 42 c2novD_ not modelled 7.4 21 PDB header:isomerase Chain: D: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: breakage-reunion domain of s.pneumoniae topo iv: crystal2 structure of a gram-positive quinolone target 43 c2kluA_ not modelled 7.3 10 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 44 c1tjlD_ not modelled 7.2 0 PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli 45 c2rdcA_ not modelled 7.1 10 PDB header:lipid binding protein Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative lipid binding protein (gsu0061) from2 geobacter sulfurreducens pca at 1.80 a resolution 46 c2kwyA_ not modelled 7.1 19 PDB header:proton transport Chain: A: PDB Molecule:v-type proton atpase subunit g; PDBTitle: structure of g61-101 47 c3iz5K_ not modelled 7.1 11 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l13a (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 48 c3onoA_ not modelled 7.1 14 PDB header:isomerase Chain: A: PDB Molecule:ribose/galactose isomerase; PDBTitle: crystal structure of ribose-5-phosphate isomerase lacab_rpib from2 vibrio parahaemolyticus 49 c2kmfA_ not modelled 7.1 16 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii 11 kda protein; PDBTitle: solution structure of psb27 from cyanobacterial photosystem2 ii 50 c2y6xA_ not modelled 7.0 20 PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii 11 kd protein; PDBTitle: structure of psb27 from thermosynechococcus elongatus 51 d1otsa_ not modelled 6.9 13 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 52 c2w8aC_ not modelled 6.7 8 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 53 d2cqea1 not modelled 6.7 10 Fold:CCCH zinc finger Superfamily:CCCH zinc finger Family:CCCH zinc finger 54 c2jo8B_ not modelled 6.6 25 PDB header:transferase Chain: B: PDB Molecule:serine/threonine-protein kinase 4; PDBTitle: solution structure of c-terminal domain of human mammalian2 sterile 20-like kinase 1 (mst1) 55 d2ba0d2 not modelled 6.6 15 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 56 c2zxrA_ not modelled 6.5 12 PDB header:hydrolase Chain: A: PDB Molecule:single-stranded dna specific exonuclease recj; PDBTitle: crystal structure of recj in complex with mg2+ from thermus2 thermophilus hb8 57 d1fx0a1 not modelled 6.4 11 Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase 58 d2jf2a1 not modelled 6.4 13 Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase 59 c1onvB_ not modelled 6.1 22 PDB header:transcription Chain: B: PDB Molecule:serine phosphatase fcp1a; PDBTitle: nmr structure of a complex containing the tfiif subunit2 rap74 and the rnap ii ctd phosphatase fcp1 60 d2b5ua2 not modelled 6.1 17 Fold:Cloacin translocation domain Superfamily:Cloacin translocation domain Family:Cloacin translocation domain 61 d1h41a2 not modelled 6.0 20 Fold:Zincin-like Superfamily:beta-N-acetylhexosaminidase-like domain Family:alpha-D-glucuronidase, N-terminal domain 62 d1hyha2 not modelled 5.9 10 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 63 c2q9qC_ not modelled 5.8 7 PDB header:replication Chain: C: PDB Molecule:dna replication complex gins protein psf1; PDBTitle: the crystal structure of full length human gins complex 64 c2l16A_ not modelled 5.8 15 PDB header:protein transport Chain: A: PDB Molecule:sec-independent protein translocase protein tatad; PDBTitle: solution structure of bacillus subtilits tatad protein in dpc micelles 65 c2rpaA_ not modelled 5.8 24 PDB header:hydrolase Chain: A: PDB Molecule:katanin p60 atpase-containing subunit a1; PDBTitle: the solution structure of n-terminal domain of microtubule severing2 enzyme 66 c2xzrA_ not modelled 5.7 21 PDB header:cell adhesion Chain: A: PDB Molecule:immunoglobulin-binding protein eibd; PDBTitle: escherichia coli immunoglobulin-binding protein eibd 391-438 fused2 to gcn4 adaptors 67 c2inrA_ not modelled 5.7 24 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase 4 subunit a; PDBTitle: crystal structure of a 59 kda fragment of topoisomerase iv subunit a2 (grla) from staphylococcus aureus 68 c2k6iA_ not modelled 5.7 18 PDB header:structural protein Chain: A: PDB Molecule:uncharacterized protein mj0223; PDBTitle: the domain features of the peripheral stalk subunit h of the2 methanogenic a1ao atp synthase and the nmr solution3 structure of h1-47 69 c1zvuA_ not modelled 5.6 18 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit a; PDBTitle: structure of the full-length e. coli parc subunit 70 c1unyA_ not modelled 5.6 9 PDB header:four helix bundle Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: structure based engineering of internal molecular surfaces2 of four helix bundles 71 c2c5qE_ not modelled 5.4 23 PDB header:structural genomics,unknown function Chain: E: PDB Molecule:rraa-like protein yer010c; PDBTitle: crystal structure of yeast yer010cp 72 c3izcK_ not modelled 5.4 21 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein rpl16 (l13p); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 73 c2hw2A_ not modelled 5.4 7 PDB header:transferase Chain: A: PDB Molecule:rifampin adp-ribosyl transferase; PDBTitle: crystal structure of rifampin adp-ribosyl transferase in2 complex with rifampin 74 c2rddB_ not modelled 5.3 15 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 75 d2e9xa1 not modelled 5.3 7 Fold:GINS helical bundle-like Superfamily:GINS helical bundle-like Family:PSF1 N-terminal domain-like 76 c3gb8B_ not modelled 5.3 4 PDB header:transport protein Chain: B: PDB Molecule:snurportin-1; PDBTitle: crystal structure of crm1/snurportin-1 complex 77 c1nohB_ not modelled 5.3 14 PDB header:viral protein Chain: B: PDB Molecule:head morphogenesis protein; PDBTitle: the structure of bacteriophage phi29 scaffolding protein2 gp7 after prohead assembly 78 c3ei1A_ not modelled 5.3 17 PDB header:dna binding protein/dna Chain: A: PDB Molecule:dna damage-binding protein 1; PDBTitle: structure of hsddb1-drddb2 bound to a 14 bp 6-42 photoproduct containing dna-duplex 79 c1ij3B_ not modelled 5.3 8 PDB header:transcription Chain: B: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 80 c1ij3C_ not modelled 5.3 8 PDB header:transcription Chain: C: PDB Molecule:general control protein gcn4; PDBTitle: gcn4-pvsl coiled-coil trimer with serine at the a(16)2 position 81 c3ilwA_ not modelled 5.3 11 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: structure of dna gyrase subunit a n-terminal domain 82 d1i9za_ not modelled 5.3 22 Fold:DNase I-like Superfamily:DNase I-like Family:Inositol polyphosphate 5-phosphatase (IPP5) 83 d2fgea3 not modelled 5.3 15 Fold:LuxS/MPP-like metallohydrolase Superfamily:LuxS/MPP-like metallohydrolase Family:MPP-like 84 c3eb7B_ not modelled 5.2 18 PDB header:toxin Chain: B: PDB Molecule:insecticidal delta-endotoxin cry8ea1; PDBTitle: crystal structure of insecticidal delta-endotoxin cry8ea1 from2 bacillus thuringiensis at 2.2 angstroms resolution 85 d1gega_ not modelled 5.2 17 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases 86 d1k1xa1 not modelled 5.2 11 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Families 57/38 glycoside transferase middle domain Family:4-alpha-glucanotransferase, domain 2 87 c3jywM_ not modelled 5.2 5 PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l16(a); PDBTitle: structure of the 60s proteins for eukaryotic ribosome based on cryo-em2 map of thermomyces lanuginosus ribosome at 8.9a resolution 88 c1zi7C_ not modelled 5.1 10 PDB header:lipid binding protein Chain: C: PDB Molecule:kes1 protein; PDBTitle: structure of truncated yeast oxysterol binding protein osh4 89 c3ifzA_ not modelled 5.1 11 PDB header:isomerase Chain: A: PDB Molecule:dna gyrase subunit a; PDBTitle: crystal structure of the first part of the mycobacterium tuberculosis2 dna gyrase reaction core: the breakage and reunion domain at 2.7 a3 resolution 90 d1tsja_ not modelled 5.1 18 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:3-demethylubiquinone-9 3-methyltransferase 91 c2yggA_ not modelled 5.0 25 PDB header:metal binding protein/transport protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: complex of cambr and cam

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0