16/01/2012 09:21:10 : INFO  : Run start: Mon Jan 16 09:21:08 GMT 2012
16/01/2012 09:21:19 : INFO  : Initialised job
16/01/2012 09:21:22 : INFO  : Renaming log file 'phyre2_20120116_092107.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/6bb8930fbc257fae/phyre_20120116_092107.log'
16/01/2012 09:21:26 : INFO  : Initialised job:
Sequence
>batch____
MNQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFA
DVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHGSKVVYAYLTYMGLG
LCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVS
VYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLNISLQTLKRNRPLFMLCIGALCV
LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIG
ALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIE
GLTYSLFSFTRKCGQAIGGSIPAFILGLSGYIANQVQTPEVIMGIRTSIALVPCGFMLLA
FVIIWFYPLTDKKFKEIVVEIDNRKKVQQQLISDITN

16/01/2012 09:21:28 : INFO  : Checked sequence
16/01/2012 09:21:33 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 09:21:35 : INFO  : PSI-BLAST 3 iterations
16/01/2012 09:24:32 : INFO  : PSI-BLAST 5 iterations
16/01/2012 09:30:09 : INFO  : Finished PSI-BLAST
16/01/2012 09:30:12 : INFO  : Running Buildali to generate a3m file
16/01/2012 11:35:05 : INFO  : Converting to HMM
16/01/2012 11:36:22 : INFO  : Calibrating HMM
16/01/2012 11:36:46 : INFO  : Searching HMM database
16/01/2012 11:45:22 : INFO  : Finished buildali
16/01/2012 11:45:25 : INFO  : Predicting secondary structure
16/01/2012 11:45:42 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 11:45:45 : INFO  : Predicting Disordered regions
16/01/2012 11:45:53 : INFO  : Predicted Disorder (Disopred)
16/01/2012 11:45:56 : INFO  : Running memsat_svm check
16/01/2012 11:50:00 : INFO  : Globular protein
16/01/2012 11:50:02 : INFO  : Predicted Transmembrane (memsat_svm) ID '6bb8930fbc257fae'
16/01/2012 11:50:05 : INFO  : Initialising fold library search
16/01/2012 11:50:11 : INFO  : Initialised search input
16/01/2012 11:50:16 : INFO  : Building Ensemble models
16/01/2012 11:50:22 : INFO  : Building hh.d1pv7a_.model.1.pdb
16/01/2012 11:50:52 : INFO  : Building hh.d1pw4a_.model.2.pdb
16/01/2012 11:51:17 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6bb8930fbc257fae/hh.d1pw4a_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6bb8930fbc257fae/d1pw4a_.2.pdb
16/01/2012 11:51:24 : INFO  : Building hh.c2gfpA_.model.3.pdb
16/01/2012 11:51:49 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6bb8930fbc257fae/hh.c2gfpA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6bb8930fbc257fae/c2gfpA_.3.pdb
16/01/2012 11:51:57 : INFO  : Building hh.d2f23a1.model.4.pdb
16/01/2012 11:52:20 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/6bb8930fbc257fae/hh.d2f23a1.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/6bb8930fbc257fae/d2f23a1.6.pdb
16/01/2012 11:52:28 : INFO  : Building d1pv7a_.1.pdb
16/01/2012 11:52:56 : INFO  : Building d1pw4a_.2.pdb
16/01/2012 11:53:25 : INFO  : Building c2gfpA_.3.pdb
16/01/2012 11:53:52 : INFO  : Building c3o7pA_.4.pdb
16/01/2012 11:54:18 : INFO  : Building c2xutC_.5.pdb
16/01/2012 11:54:44 : INFO  : Building d2f23a1.6.pdb
16/01/2012 11:55:12 : INFO  : Building d1grja1.7.pdb
16/01/2012 11:55:39 : INFO  : Building c3qnqD_.8.pdb
16/01/2012 11:56:05 : INFO  : Building c1zxaB_.9.pdb
16/01/2012 11:56:33 : INFO  : Building c1by0A_.10.pdb
16/01/2012 11:57:02 : INFO  : Building c2q7cC_.11.pdb
16/01/2012 11:57:28 : INFO  : Building d1f6ga_.12.pdb
16/01/2012 11:57:58 : INFO  : Building c3hd6A_.13.pdb
16/01/2012 11:58:26 : INFO  : Building d1oqwa_.14.pdb
16/01/2012 11:58:53 : INFO  : Building d1xmpa_.15.pdb
16/01/2012 11:59:21 : INFO  : Building d2h8aa1.16.pdb
16/01/2012 11:59:49 : INFO  : Building d2pila_.17.pdb
16/01/2012 12:00:18 : INFO  : Building c3jqhA_.18.pdb
16/01/2012 12:00:46 : INFO  : Building d1ji6a3.19.pdb
16/01/2012 12:01:14 : INFO  : Building c2hjmB_.20.pdb
16/01/2012 12:03:46 : INFO  : Finished HH model building
16/01/2012 12:03:49 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 12:05:13 : INFO  : html domain output complete ID '6bb8930fbc257fae'
16/01/2012 12:50:52 : INFO  : Run end  : Mon Jan 16 12:50:50 GMT 2012
