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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3ei1A_

Fold library idPDB HeaderMoleculeTitle
c3ei1A_PDB header: dna binding protein/dnaChain: A: PDB Molecule: dna damage-binding protein 1;PDBTitle: structure of hsddb1-drddb2 bound to a 14 bp 6-42 photoproduct containing dna-duplex


Added to library: Tue Mar 16 13:05:16 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKIAVMELFRPK
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Known secondary structure (DSSP)




S



S
SSS
TT

TT


SS


T
 .........80.........90.........100.........110.........120.........130.........140
Sequence GESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDGLF
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Known secondary structure (DSSP) T
SS
TT
TT


SS

B
TT


TT
S
BTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence KVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSLREKEFNKGPWKQE
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Known secondary structure (DSSP)

TT
TT



S

S
SS
SS
TTTTTT
SS

 .........220.........230.........240.........250.........260.........270.........280
Sequence NVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRL
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Known secondary structure (DSSP)
TT



TTT


SS
TT

TS

STTS
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence FMLLLEKEEQVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFT
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Known secondary structure (DSSP)



S

STT
SSS

SS

TTS


 .........360.........370.........380.........390.........400.........410.........420
Sequence NLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDT
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Known secondary structure (DSSP)





SSSS



GGG
SB






TTS
S

 .........430.........440.........450.........460.........470.........480.........490
Sequence LVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQ
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Known secondary structure (DSSP) TTTT

TT

SSS
TTTSS
SSS



TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence AKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEMEHEVACLDITPLGGLSPLCAIGLWTDISAR
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Known secondary structure (DSSP)





SSTT
SS

SS









TTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence ILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTV
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Known secondary structure (DSSP) TTT



SS

TTTTS
TTT



SS

 .........640.........650.........660.........670.........680.........690.........700
Sequence LRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEI
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Known secondary structure (DSSP) TTSSS
SSSSBSSS




SSSTT
SS

S
 .........710.........720.........730.........740.........750.........760.........770
Sequence QKLHIRTVPLYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFGEEVEV
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Known secondary structure (DSSP) SS
SSGGGT
SSSSSS

TTTS
S







 .........780.........790.........800.........810.........820.........830.........840
Sequence HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKL
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Known secondary structure (DSSP) TTT



TT

TT





TT
SS



SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence QTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMR
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Known secondary structure (DSSP) SS



TTTT
TTS



S
TTSSB
 .........920.........930.........940.........950.........960.........970.........980
Sequence SVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLF
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Known secondary structure (DSSP)
TTTT

S
B
TTTTS

S


STB
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence HLGEFVNVFCHGSLVMQPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRS
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Known secondary structure (DSSP)
SS








TTS

S

GGG

S
 .........1060.........1070.........1080.........1090.........1100.....
Sequence FHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQATADDLIKVVEELTRIH
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Known secondary structure (DSSP)
SS


BSGGGGS


S



GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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