Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	D	R	I	I	E	K	L	D	H	G	W	W	V	V	S	H	E	Q	K	L	W	L	P	K	G	E	L	P	Y	G	E	A	A	N	F	D	L	V	G	Q	R	A	L	Q	I	G	E	W	Q	G	E	P	V	W	L	V	Q	Q	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		R	R	H	D	M	G	S	V	R	Q	V	I	D	L	D	V	G	L	F	Q	L	A	G	R	G	V	Q	L	A	E	F	Y	R	S	H	K	Y	C	G	Y	C	G	H	E	M	Y	P	S	K	T	E	W	A	M	L	C	S	H	C	R
Secondary structure
SS confidence
Disorder		?	?	?																																					?					?		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	R	Y	Y	P	Q	I	A	P	C	I	I	V	A	I	R	R	D	D	S	I	L	L	A	Q	H	T	R	H	R	N	G	V	H	T	V	L	A	G	F	V	E	V	G	E	T	L	E	Q	A	V	A	R	E	V	M	E	E	S	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	K	V	K	N	L	R	Y	V	T	S	Q	P	W	P	F	P	Q	S	L	M	T	A	F	M	A	E	Y	D	S	G	D	I	V	I	D	P	K	E	L	L	E	A	N	W	Y	R	Y	D	D	L	P	L	L	P	P	P	G	T	V
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.
Sequence		A	R	R	L	I	E	D	T	V	A	M	C	R	A	E	Y	E
Secondary structure
SS confidence
Disorder															?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2gb5 chain B Region: 2 - 256 Aligned: 255 Modelled: 255 Confidence: 100.0% Identity: 97% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 3cng chain C Region: 95 - 253 Aligned: 158 Modelled: 158 Confidence: 100.0% Identity: 23% PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea Phyre2 PDB 1vk6 chain A domain 2 Region: 126 - 256 Aligned: 131 Modelled: 131 Confidence: 100.0% Identity: 97% Fold: Nudix Superfamily: Nudix Family: NADH pyrophosphatase Phyre2 PDB 3q4i chain A Region: 79 - 256 Aligned: 153 Modelled: 157 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ Phyre2 PDB 2fb1 chain A domain 2 Region: 124 - 255 Aligned: 129 Modelled: 130 Confidence: 99.9% Identity: 19% Fold: Nudix Superfamily: Nudix Family: BT0354 N-terminal domain-like Phyre2 PDB 3gz8 chain C Region: 116 - 253 Aligned: 137 Modelled: 138 Confidence: 99.9% Identity: 17% PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose Phyre2 PDB 2fb1 chain A Region: 124 - 255 Aligned: 129 Modelled: 132 Confidence: 99.9% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron Phyre2 PDB 3h95 chain A Region: 126 - 253 Aligned: 125 Modelled: 128 Confidence: 99.9% Identity: 20% PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 Phyre2 PDB 3dku chain B Region: 126 - 257 Aligned: 132 Modelled: 132 Confidence: 99.9% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 PDB 2b0v chain A domain 1 Region: 126 - 253 Aligned: 128 Modelled: 128 Confidence: 99.9% Identity: 24% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2fml chain A domain 2 Region: 96 - 257 Aligned: 161 Modelled: 162 Confidence: 99.9% Identity: 19% Fold: Nudix Superfamily: Nudix Family: BT0354 N-terminal domain-like Phyre2 PDB 3o8s chain A Region: 126 - 257 Aligned: 127 Modelled: 132 Confidence: 99.9% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution Phyre2 PDB 2pq1 chain B Region: 130 - 253 Aligned: 119 Modelled: 124 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 Phyre2 PDB 3gg6 chain A Region: 121 - 256 Aligned: 134 Modelled: 136 Confidence: 99.9% Identity: 24% PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 Phyre2 PDB 2qjo chain B Region: 124 - 252 Aligned: 129 Modelled: 129 Confidence: 99.9% Identity: 19% PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. Phyre2 PDB 3gz6 chain A Region: 130 - 255 Aligned: 125 Modelled: 126 Confidence: 99.8% Identity: 18% PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna Phyre2 PDB 1sjy chain A Region: 118 - 253 Aligned: 136 Modelled: 136 Confidence: 99.8% Identity: 24% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3rh7 chain A Region: 127 - 253 Aligned: 114 Modelled: 127 Confidence: 99.8% Identity: 14% PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution Phyre2 PDB 3ef5 chain A Region: 129 - 252 Aligned: 123 Modelled: 124 Confidence: 99.8% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp Phyre2 PDB 3grn chain B Region: 125 - 253 Aligned: 128 Modelled: 129 Confidence: 99.8% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 Phyre2 1 c2gb5B_ 2 c3cngC_ 3 d1vk6a2 4 c3q4iA_ 5 d2fb1a2 6 c3gz8C_ 7 c2fb1A_ 8 c3h95A_ 9 c3dkuB_ 10 d2b0va1 11 d2fmla2 12 c3o8sA_ 13 c2pq1B_ 14 c3gg6A_ 15 c2qjoB_ 16 c3gz6A_ 17 d1sjya_ 18 c3rh7A_ 19 c3ef5A_ 20 c3grnB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2gb5B_ 100.0 97 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 2 c3cngC_ 100.0 23 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 3 d1vk6a2 100.0 97 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 4 c3q4iA_ 99.9 17 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 5 d2fb1a2 99.9 19 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 6 c3gz8C_ 99.9 17 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 7 c2fb1A_ 99.9 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 8 c3h95A_ 99.9 20 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 9 c3dkuB_ 99.9 19 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 10 d2b0va1 99.9 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 11 d2fmla2 99.9 19 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 12 c3o8sA_ 99.9 23 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 13 c2pq1B_ 99.9 20 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 14 c3gg6A_ 99.9 24 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 15 c2qjoB_ 99.9 19 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 16 c3gz6A_ 99.8 18 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 17 d1sjya_ 99.8 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 18 c3rh7A_ 99.8 14 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 19 c3ef5A_ 99.8 22 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 20 c3grnB_ 99.8 21 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 21 c2yyhC_ not modelled 99.8 22 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 22 c2r5wA_ not modelled 99.8 19 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 23 d1vhza_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 24 c3fk9B_ not modelled 99.8 23 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 25 d1vk6a3 not modelled 99.8 98 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 26 c3f6aA_ not modelled 99.8 22 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 27 d1ryaa_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 28 c3gwyA_ not modelled 99.8 23 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 29 c2fmlB_ not modelled 99.8 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 30 c2kdvA_ not modelled 99.8 24 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 31 c3i9xA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 32 d2azwa1 not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 33 d1irya_ not modelled 99.8 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 34 c3e57A_ not modelled 99.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 35 d1k2ea_ not modelled 99.8 23 Fold:Nudix Superfamily:Nudix Family:MutT-like 36 c3r03B_ not modelled 99.8 24 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 37 d2b06a1 not modelled 99.8 23 Fold:Nudix Superfamily:Nudix Family:MutT-like 38 c3hhjA_ not modelled 99.8 23 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 39 c2w4eA_ not modelled 99.8 19 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 40 d1v8ya_ not modelled 99.8 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 41 d2fkba1 not modelled 99.8 15 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 42 c2yvoA_ not modelled 99.8 28 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 43 d1vcda1 not modelled 99.8 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 44 d1g0sa_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 45 c3id9B_ not modelled 99.8 27 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 46 c2jvbA_ not modelled 99.8 17 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 47 c2pqvA_ not modelled 99.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 48 c3n77B_ not modelled 99.8 25 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 49 c3fjyB_ not modelled 99.8 20 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 50 d2fvva1 not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 51 c2fvvA_ not modelled 99.8 20 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 52 c3exqA_ not modelled 99.8 21 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 53 d1puna_ not modelled 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 54 c3bm4B_ not modelled 99.7 20 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 55 c2o1cB_ not modelled 99.7 23 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 56 c3f13A_ not modelled 99.7 22 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 57 d1ktga_ not modelled 99.7 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 58 d1jkna_ not modelled 99.7 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 59 d2a6ta2 not modelled 99.7 15 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 60 d1xsba_ not modelled 99.7 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 61 d1nqza_ not modelled 99.7 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 62 c3sonB_ not modelled 99.7 16 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 63 c2qkmF_ not modelled 99.7 16 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 64 d2o5fa1 not modelled 99.7 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 65 c3edsA_ not modelled 99.7 25 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 66 d1q33a_ not modelled 99.7 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 67 d1ppva_ not modelled 99.7 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 68 c3fcmA_ not modelled 99.7 10 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 69 d1hzta_ not modelled 99.7 17 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 70 d1mqea_ not modelled 99.7 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 71 d1viua_ not modelled 99.7 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 72 c3q91D_ not modelled 99.6 21 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 73 c1rrqA_ not modelled 99.6 13 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 74 d1x51a1 not modelled 99.6 12 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 75 d1rrqa2 not modelled 99.6 13 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 76 c2i6kA_ not modelled 99.5 17 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 77 c3dupB_ not modelled 99.4 11 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 78 c2pnyA_ not modelled 99.3 16 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 79 d1u20a1 not modelled 99.3 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 80 c2j8qB_ not modelled 99.2 16 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 81 c3qsjA_ not modelled 98.9 32 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 82 c3couA_ not modelled 98.4 24 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 83 c3kvhA_ not modelled 97.9 15 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 84 c3p5tE_ not modelled 95.2 17 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 85 d2ct7a1 not modelled 94.1 13 Fold:RING/U-box Superfamily:RING/U-box Family:IBR domain 86 d2fiya1 not modelled 93.2 23 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 87 c1i3qI_ not modelled 93.0 21 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 88 c1nnjA_ not modelled 92.8 21 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 89 d2k4xa1 not modelled 92.6 22 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27a 90 c2js4A_ not modelled 92.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 91 c2f5qA_ not modelled 92.5 21 PDB header:hydrolase/dna Chain: A: PDB Molecule:formamidopyrimidine-dna glycosidase; PDBTitle: catalytically inactive (e3q) mutm crosslinked to oxog:c2 containing dna cc2 92 c2jr6A_ not modelled 92.0 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein nma0874; PDBTitle: solution structure of upf0434 protein nma0874. northeast structural2 genomics target mr32 93 c3h0gI_ not modelled 92.0 25 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii subunit rpb9; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 94 c1k82D_ not modelled 91.9 20 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 95 c2opfA_ not modelled 91.8 20 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 96 d2jnya1 not modelled 91.4 12 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 97 c2aklA_ not modelled 90.6 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:phna-like protein pa0128; PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa 98 d2pk7a1 not modelled 90.0 15 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 99 c2kpiA_ not modelled 89.2 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 100 c1ee8A_ not modelled 89.1 21 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 101 d2hf1a1 not modelled 88.9 19 Fold:Trm112p-like Superfamily:Trm112p-like Family:Trm112p-like 102 d1pfta_ not modelled 88.1 21 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 103 c2pziA_ not modelled 87.9 13 PDB header:transferase Chain: A: PDB Molecule:probable serine/threonine-protein kinase pkng; PDBTitle: crystal structure of protein kinase pkng from mycobacterium2 tuberculosis in complex with tetrahydrobenzothiophene ax20017 104 c1hk8A_ not modelled 87.4 25 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 105 d1hk8a_ not modelled 87.4 25 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 106 c2k5cA_ not modelled 86.9 28 PDB header:metal binding protein Chain: A: PDB Molecule:uncharacterized protein pf0385; PDBTitle: nmr structure for pf0385 107 d2akla2 not modelled 86.0 22 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 108 d1ee8a3 not modelled 85.7 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 109 c1vddC_ not modelled 85.5 19 PDB header:recombination Chain: C: PDB Molecule:recombination protein recr; PDBTitle: crystal structure of recombinational repair protein recr 110 d1tdza3 not modelled 85.2 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 111 d1vdda_ not modelled 85.1 15 Fold:Recombination protein RecR Superfamily:Recombination protein RecR Family:Recombination protein RecR 112 d1x3za1 not modelled 84.5 20 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 113 d1r2za3 not modelled 84.4 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 114 c2ba1B_ not modelled 83.4 23 PDB header:rna binding protein Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4; PDBTitle: archaeal exosome core 115 d2f4ma1 not modelled 82.9 19 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 116 d1k82a3 not modelled 82.1 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 117 d1k3xa3 not modelled 82.0 21 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:C-terminal, Zn-finger domain of MutM-like DNA repair proteins 118 c2owoA_ not modelled 81.9 22 PDB header:ligase/dna Chain: A: PDB Molecule:dna ligase; PDBTitle: last stop on the road to repair: structure of e.coli dna ligase bound2 to nicked dna-adenylate 119 c3k7aM_ not modelled 81.7 17 PDB header:transcription Chain: M: PDB Molecule:transcription initiation factor iib; PDBTitle: crystal structure of an rna polymerase ii-tfiib complex 120 d1dl6a_ not modelled 81.5 13 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0