Phyre 2 alignment of P32664 with c1k82D_

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Job Description | P32664
Confidence | 91.91% | Date | Thu Jan 5 11:49:56 GMT 2012
Rank | 94 | Aligned Residues | 30
% Identity | 20% | Template | c1k82D_
PDB info | PDB header:hydrolase/dna | Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; | PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna
Resolution | 2.10 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . |  |  | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Y | R | S | H | K | Y | C | G | Y | C | G | H | E | M | Y | . | . | P | S | K | T | E | W | A | M | L | C | S | H | C | R | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | G | R | K | G | E | P | C | R | V | C | G | T | P | I | V | A | T | K | H | A | Q | R | A | T | F | Y | C | R | Q | C | Q | K
Template Known Secondary structure |  | T |  | T | T | S | B |  | T | T | T |  |  | B |  |  |  |  |  |  | T | T |  |  |  |  |  |  | T | T | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 237 | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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