Phyre 2 alignment of P32664 with c2opfA_

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Job Description | P32664
Confidence | 91.76% | Date | Thu Jan 5 11:49:56 GMT 2012
Rank | 95 | Aligned Residues | 30
% Identity | 20% | Template | c2opfA_
PDB info | PDB header:hydrolase/dna | Chain: A: PDB Molecule:endonuclease viii; | PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate
Resolution | 1.85 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 92 | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . |  |  | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | Y | R | S | H | K | Y | C | G | Y | C | G | H | E | M | Y | . | . | P | S | K | T | E | W | A | M | L | C | S | H | C | R | E
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | H | R | D | G | E | P | C | E | R | C | G | S | I | I | E | K | T | T | L | S | S | A | P | F | Y | W | C | P | G | C | Q | H
Template Known Secondary structure |  | T |  | T | T | S | B |  | T | T | T |  |  | B |  |  |  |  |  |  | T | T |  |  |  |  |  |  | T | T | T |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 231 | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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