Phyre 2 alignment of P32664 with c1pqvS_

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Job Description | P32664
Confidence | 50.44% | Date | Thu Jan 5 11:49:56 GMT 2012
Rank | 185 | Aligned Residues | 26
% Identity | 23% | Template | c1pqvS_
PDB info | PDB header:transferase/transcription | Chain: S: PDB Molecule:transcription elongation factor s-ii; | PDBTitle: rna polymerase ii-tfiis complex
Resolution | 3.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 98 | . | 100 | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | . | . | 110 | . | . | . | . | . |  |  | . | . | . | . | 120 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |
Query Sequence |  | C | G | Y | C | G | H | E | M | Y | P | . | . | . | . | . | . | . | . | S | K | T | E | W | A | M | L | . | . | C | S | H | C | R | E | R | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | C | G | K | C | K | E | K | K | V | S | Y | Y | Q | L | Q | T | R | S | A | D | E | P | L | T | T | F | C | T | C | E | A | C | G | N | R | W
Template Known Secondary structure |  |  | S | S | S |  | S | S |  |  |  |  |  |  |  |  |  | S |  | S | S | S |  |  |  |  |  |  |  |  | T | T | T |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 271 | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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