Phyre 2 alignment of P32664 with c3o37D_

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Job Description | P32664
Confidence | 22.20% | Date | Thu Jan 5 11:49:56 GMT 2012
Rank | 311 | Aligned Residues | 24
% Identity | 17% | Template | c3o37D_
PDB info | PDB header:transcription/protein binding | Chain: D: PDB Molecule:transcription intermediary factor 1-alpha; | PDBTitle: crystal structure of trim24 phd-bromo complexed with h3(1-10)k42 peptide
Resolution | 2.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 94 | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | S | H | K | Y | C | G | Y | C | G | H | E | M | Y | P | S | K | T | E | W | A | M | L | C | S | H | C | R | E | R | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | N | E | D | W | C | A | V | C | Q | . | . | . | . | . | . | N | G | G | E | L | L | C | C | E | K | C | P | K | V | F
Template Known Secondary structure |  |  |  | S | S |  | T | T | T |  | . | . | . | . | . | . |  |  | S | S |  |  |  |  | S | S | S | S |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 825 | . | . | . | . | 830 | . | . | . |  |  |  |  |  |  | . | . | . | . | . | . | 840 | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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