Phyre 2 alignment of P32664 with c2gajA_

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Job Description | P32664
Confidence | 50.94% | Date | Thu Jan 5 11:49:56 GMT 2012
Rank | 184 | Aligned Residues | 24
% Identity | 38% | Template | c2gajA_
PDB info | PDB header:isomerase | Chain: A: PDB Molecule:dna topoisomerase i; | PDBTitle: structure of full length topoisomerase i from thermotoga maritima in2 monoclinic crystal form
Resolution | 1.95 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 98 | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . |  |  | . | . | . | . | 120 | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |
Query Sequence |  | C | G | Y | C | G | H | E | M | Y | P | S | K | T | E | W | A | M | L | . | . | C | S | H | C | R | E | R | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |
Alig confidence |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  | . |  |  |  |  |  |
Template Conservation |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Template Sequence |  | C | S | . | C | G | K | E | M | R | L | S | F | G | K | Y | G | F | Y | L | K | C | . | E | C | G | K | T | R
Template Known Secondary structure |  |  | S | . | S | S |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  | . | S | S | S |  |  |
Template Predicted Secondary structure |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 559 | 560 |  | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . |  | . | 580 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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