Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	S	F	N	E	G	V	V	S	P	L	L	S	F	W	R	R	S	L	M	L	A	G	A	L	L	L	T	A	C	S	H	N	S	S	L	P	P	F	T	A	S	G	F	A	E	D	Q	G	A	V	R	I	W	R	K	D	S	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																						?		?	?				?	?	?	?	?	?	?	?	?		?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		D	N	V	H	L	L	A	V	F	S	P	W	R	S	G	D	T	T	T	R	E	Y	R	W	Q	G	D	N	L	T	L	I	N	I	N	V	Y	S	K	P	P	V	N	I	R	A	R	F	D	D	R	G	D	L	S	F	M	Q	R	E
Secondary structure
SS confidence
Disorder			?																									?								?	?	?	?	?	?	?																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	D	G	E	K	Q	Q	L	S	N	D	Q	I	D	L	Y	R	Y	R	A	D	Q	I	R	Q	I	S	D	A	L	R	Q	G	R	V	V	L	R	Q	G	R	W	H	A	M	E	Q	T	V	T	T	C	E	G	Q	T	I	K	P	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																							?	?	?																				?					?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence		L	D	S	Q	A	I	A	H	I	E	R	R	Q	S	R	S	S	V	D	V	S	V	A	W	L	E	A	P	E	G	S	Q	L	L	L	V	A	N	S	D	F	C	R	W	Q	P	N	E	K	T	F
Secondary structure
SS confidence
Disorder					?	?	?	?								?	?	?	?	?	?										?															?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2ph0 chain A Region: 108 - 144 Aligned: 37 Modelled: 37 Confidence: 74.5% Identity: 24% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q6d2t7_erwct protein from erwinia2 carotovora. nesg target ewr41. Phyre2 PDB 2hqv chain A domain 1 Region: 108 - 142 Aligned: 35 Modelled: 34 Confidence: 71.1% Identity: 17% Fold: Heme iron utilization protein-like Superfamily: Heme iron utilization protein-like Family: ChuX-like Phyre2 PDB 2ovi chain A Region: 108 - 143 Aligned: 36 Modelled: 36 Confidence: 70.6% Identity: 17% PDB header:ligand binding protein, metal transport Chain: A: PDB Molecule:hypothetical protein chux; PDBTitle: structure of the heme binding protein chux Phyre2 PDB 2k2t chain A Region: 29 - 70 Aligned: 42 Modelled: 42 Confidence: 30.5% Identity: 29% PDB header:cell adhesion Chain: A: PDB Molecule:micronemal protein 6; PDBTitle: epidermal growth factor-like domain 2 from toxoplasma2 gondii microneme protein 6 Phyre2 PDB 2k4v chain A Region: 84 - 125 Aligned: 42 Modelled: 42 Confidence: 28.0% Identity: 21% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1076; PDBTitle: solution structure of uncharacterized protein pa1076 from2 pseudomonas aeruginosa. northeast structural genomics3 consortium (nesg) target pat3, ontario center for4 structural proteomics target pa1076 . Phyre2 PDB 1njh chain A Region: 74 - 118 Aligned: 41 Modelled: 45 Confidence: 22.1% Identity: 12% Fold: Hypothetical protein YojF Superfamily: Hypothetical protein YojF Family: Hypothetical protein YojF Phyre2 PDB 3bq4 chain G Region: 102 - 114 Aligned: 13 Modelled: 13 Confidence: 21.6% Identity: 38% PDB header:viral protein Chain: G: PDB Molecule:fiber; PDBTitle: crystal structure of ad35 fiber knob Phyre2 PDB 2vbe chain A Region: 157 - 181 Aligned: 22 Modelled: 23 Confidence: 20.9% Identity: 36% PDB header:viral protein Chain: A: PDB Molecule:tailspike-protein; PDBTitle: tailspike protein of bacteriophage sf6 Phyre2 PDB 2zzf chain A Region: 84 - 127 Aligned: 36 Modelled: 44 Confidence: 20.8% Identity: 22% PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of alanyl-trna synthetase without2 oligomerization domain Phyre2 PDB 2j12 chain A domain 1 Region: 86 - 114 Aligned: 29 Modelled: 29 Confidence: 19.8% Identity: 21% Fold: Virus attachment protein globular domain Superfamily: Virus attachment protein globular domain Family: Adenovirus fiber protein "knob" domain Phyre2 PDB 1yfs chain B Region: 88 - 128 Aligned: 41 Modelled: 41 Confidence: 18.5% Identity: 27% PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine Phyre2 PDB 1ydg chain A Region: 123 - 154 Aligned: 32 Modelled: 32 Confidence: 17.7% Identity: 16% Fold: Flavodoxin-like Superfamily: Flavoproteins Family: WrbA-like Phyre2 PDB 2e70 chain A Region: 155 - 185 Aligned: 31 Modelled: 31 Confidence: 17.0% Identity: 23% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 1h7z chain A Region: 102 - 114 Aligned: 13 Modelled: 13 Confidence: 16.4% Identity: 31% Fold: Virus attachment protein globular domain Superfamily: Virus attachment protein globular domain Family: Adenovirus fiber protein "knob" domain Phyre2 PDB 2d9q chain B domain 1 Region: 38 - 84 Aligned: 47 Modelled: 47 Confidence: 16.4% Identity: 11% Fold: Immunoglobulin-like beta-sandwich Superfamily: Immunoglobulin Family: C2 set domains Phyre2 PDB 3n08 chain A Region: 171 - 224 Aligned: 33 Modelled: 33 Confidence: 15.3% Identity: 33% PDB header:phosphatidylethanolamine-binding protein Chain: A: PDB Molecule:putative phosphatidylethanolamine-binding protein (pebp); PDBTitle: crystal structure of a putative phosphatidylethanolamine-binding2 protein (pebp) homolog ct736 from chlamydia trachomatis d/uw-3/cx Phyre2 PDB 2j2j chain A domain 1 Region: 71 - 114 Aligned: 41 Modelled: 44 Confidence: 15.2% Identity: 15% Fold: Virus attachment protein globular domain Superfamily: Virus attachment protein globular domain Family: Adenovirus fiber protein "knob" domain Phyre2 PDB 1riq chain A domain 2 Region: 88 - 128 Aligned: 41 Modelled: 41 Confidence: 14.4% Identity: 22% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain Phyre2 PDB 2bzv chain A Region: 102 - 114 Aligned: 13 Modelled: 13 Confidence: 14.4% Identity: 31% PDB header:viral protein Chain: A: PDB Molecule:fiber protein 2; PDBTitle: human enteric adenovirus serotype 41 short fiber head (ph8) Phyre2 PDB 3hxx chain A Region: 86 - 128 Aligned: 43 Modelled: 43 Confidence: 14.1% Identity: 28% PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp Phyre2 1 c2ph0A_ 2 d2hqva1 3 c2oviA_ 4 c2k2tA_ 5 c2k4vA_ 6 d1njha_ 7 c3bq4G_ 8 c2vbeA_ 9 c2zzfA_ 10 d2j12a1 11 c1yfsB_ 12 d1ydga_ 13 c2e70A_ 14 d1h7za_ 15 d2d9qb1 16 c3n08A_ 17 d2j2ja1 18 d1riqa2 19 c2bzvA_ 20 c3hxxA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2ph0A_ 74.5 24 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the q6d2t7_erwct protein from erwinia2 carotovora. nesg target ewr41. 2 d2hqva1 71.1 17 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:ChuX-like 3 c2oviA_ 70.6 17 PDB header:ligand binding protein, metal transport Chain: A: PDB Molecule:hypothetical protein chux; PDBTitle: structure of the heme binding protein chux 4 c2k2tA_ 30.5 29 PDB header:cell adhesion Chain: A: PDB Molecule:micronemal protein 6; PDBTitle: epidermal growth factor-like domain 2 from toxoplasma2 gondii microneme protein 6 5 c2k4vA_ 28.0 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein pa1076; PDBTitle: solution structure of uncharacterized protein pa1076 from2 pseudomonas aeruginosa. northeast structural genomics3 consortium (nesg) target pat3, ontario center for4 structural proteomics target pa1076 . 6 d1njha_ 22.1 12 Fold:Hypothetical protein YojF Superfamily:Hypothetical protein YojF Family:Hypothetical protein YojF 7 c3bq4G_ 21.6 38 PDB header:viral protein Chain: G: PDB Molecule:fiber; PDBTitle: crystal structure of ad35 fiber knob 8 c2vbeA_ 20.9 36 PDB header:viral protein Chain: A: PDB Molecule:tailspike-protein; PDBTitle: tailspike protein of bacteriophage sf6 9 c2zzfA_ 20.8 22 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of alanyl-trna synthetase without2 oligomerization domain 10 d2j12a1 19.8 21 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Adenovirus fiber protein "knob" domain 11 c1yfsB_ 18.5 27 PDB header:ligase Chain: B: PDB Molecule:alanyl-trna synthetase; PDBTitle: the crystal structure of alanyl-trna synthetase in complex2 with l-alanine 12 d1ydga_ 17.7 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 13 c2e70A_ 17.0 23 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 14 d1h7za_ 16.4 31 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Adenovirus fiber protein "knob" domain 15 d2d9qb1 16.4 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:C2 set domains 16 c3n08A_ 15.3 33 PDB header:phosphatidylethanolamine-binding protein Chain: A: PDB Molecule:putative phosphatidylethanolamine-binding protein (pebp); PDBTitle: crystal structure of a putative phosphatidylethanolamine-binding2 protein (pebp) homolog ct736 from chlamydia trachomatis d/uw-3/cx 17 d2j2ja1 15.2 15 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Adenovirus fiber protein "knob" domain 18 d1riqa2 14.4 22 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 19 c2bzvA_ 14.4 31 PDB header:viral protein Chain: A: PDB Molecule:fiber protein 2; PDBTitle: human enteric adenovirus serotype 41 short fiber head (ph8) 20 c3hxxA_ 14.1 28 PDB header:ligase Chain: A: PDB Molecule:alanyl-trna synthetase; PDBTitle: crystal structure of catalytic fragment of e. coli alars in complex2 with amppcp 21 c3fduF_ not modelled 13.6 15 PDB header:isomerase Chain: F: PDB Molecule:putative enoyl-coa hydratase/isomerase; PDBTitle: crystal structure of a putative enoyl-coa hydratase/isomerase from2 acinetobacter baumannii 22 d2v3ia1 not modelled 13.1 27 Fold:Concanavalin A-like lectins/glucanases Superfamily:Concanavalin A-like lectins/glucanases Family:Glycosyl hydrolase family 7 catalytic core 23 c3dbxA_ not modelled 12.4 20 PDB header:immune system Chain: A: PDB Molecule:cd1-2 antigen; PDBTitle: structure of chicken cd1-2 with bound fatty acid 24 d2imja1 not modelled 12.3 50 Fold:Cystatin-like Superfamily:NTF2-like Family:PFL3262-like 25 d1knba_ not modelled 12.3 38 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Adenovirus fiber protein "knob" domain 26 c3cncD_ not modelled 11.9 23 PDB header:viral protein Chain: D: PDB Molecule:fiber protein; PDBTitle: crystal structure of ad16 fiber knob 27 c3hk4B_ not modelled 11.4 11 PDB header:lyase Chain: B: PDB Molecule:mlr7391 protein; PDBTitle: crystal structure of a putative snoal-like polyketide cyclase2 [carbohydrate phosphatase] (mlr7391) from mesorhizobium loti at 1.963 a resolution 28 d1kaca_ not modelled 11.2 38 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Adenovirus fiber protein "knob" domain 29 d2nrqa1 not modelled 11.1 27 Fold:RL5-like Superfamily:RL5-like Family:SSO1042-like 30 d2ijra1 not modelled 11.0 23 Fold:Api92-like Superfamily:Api92-like Family:Api92-like 31 d1qhva_ not modelled 10.8 54 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Adenovirus fiber protein "knob" domain 32 c2wstE_ not modelled 10.7 23 PDB header:viral protein Chain: E: PDB Molecule:putative fiber protein; PDBTitle: head domain of porcine adenovirus type 4 nadc-1 isolate2 fibre 33 c1yaxB_ not modelled 10.6 22 PDB header:transferase, signaling protein Chain: B: PDB Molecule:virulence sensor protein phoq, sensor domain; PDBTitle: cystal structure analysis of s.typhimurium phoq sensor domain with2 calcium 34 c3ls1A_ not modelled 10.4 14 PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+ 35 d2po6a2 not modelled 10.3 15 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 36 d2arka1 not modelled 9.7 16 Fold:Flavodoxin-like Superfamily:Flavoproteins Family:WrbA-like 37 d1rjlc_ not modelled 9.3 21 Fold:open-sided beta-meander Superfamily:Outer surface protein Family:Outer surface protein 38 c2rf4B_ not modelled 9.3 22 PDB header:transferase Chain: B: PDB Molecule:dna-directed rna polymerase i subunit rpa4; PDBTitle: crystal structure of the rna polymerase i subcomplex a14/43 39 d2o39a1 not modelled 9.0 31 Fold:Virus attachment protein globular domain Superfamily:Virus attachment protein globular domain Family:Adenovirus fiber protein "knob" domain 40 c1qiuC_ not modelled 8.3 54 PDB header:fibre protein Chain: C: PDB Molecule:adenovirus fibre; PDBTitle: a triple beta-spiral in the adenovirus fibre shaft reveals2 a new structural motif for biological fibres 41 d2f2ac1 not modelled 8.3 11 Fold:Non-globular all-alpha subunits of globular proteins Superfamily:Glu-tRNAGln amidotransferase C subunit Family:Glu-tRNAGln amidotransferase C subunit 42 d2dy7a1 not modelled 8.3 22 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:Chromo domain 43 d1fuxa_ not modelled 8.2 38 Fold:PEBP-like Superfamily:PEBP-like Family:Prokaryotic PEBP-like proteins 44 d1eyga_ not modelled 7.3 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 45 c3jvgB_ not modelled 7.3 20 PDB header:immune system Chain: B: PDB Molecule:t-cell surface glycoprotein cd1a1 antigen; PDBTitle: crystal structure of chicken cd1-1 46 c3tqyA_ not modelled 7.2 15 PDB header:transferase Chain: A: PDB Molecule:single-stranded dna-binding protein; PDBTitle: structure of a single-stranded dna-binding protein (ssb), from2 coxiella burnetii 47 d1a5za2 not modelled 7.2 8 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 48 d1dmla1 not modelled 7.1 41 Fold:DNA clamp Superfamily:DNA clamp Family:DNA polymerase processivity factor 49 c1gzpA_ not modelled 7.1 21 PDB header:glycoprotein Chain: A: PDB Molecule:t-cell surface glycoprotein cd1b; PDBTitle: cd1b in complex with gm2 ganglioside 50 d1q42a_ not modelled 6.8 36 Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like 51 d1pgxa_ not modelled 6.6 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 52 d1jmxa5 not modelled 6.4 13 Fold:Streptavidin-like Superfamily:Quinohemoprotein amine dehydrogenase A chain, domain 3 Family:Quinohemoprotein amine dehydrogenase A chain, domain 3 53 c1f02T_ not modelled 6.3 18 PDB header:cell adhesion Chain: T: PDB Molecule:translocated intimin receptor; PDBTitle: crystal structure of c-terminal 282-residue fragment of2 intimin in complex with translocated intimin receptor3 (tir) intimin-binding domain 54 c3pifD_ not modelled 6.3 23 PDB header:hydrolase Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1); PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese 55 d1xu2r_ not modelled 6.3 62 Fold:TNF receptor-like Superfamily:TNF receptor-like Family:BAFF receptor-like 56 c1xu2R_ not modelled 6.3 62 PDB header:cytokine, hormone/growth factor receptor Chain: R: PDB Molecule:tumor necrosis factor receptor superfamily member 17; PDBTitle: the crystal structure of april bound to bcma 57 c3qiiA_ not modelled 6.1 17 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 58 d1o75a1 not modelled 5.9 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:Tp47 lipoprotein, middle and C-terminal domains Family:Tp47 lipoprotein, middle and C-terminal domains 59 c1rpuA_ not modelled 5.9 19 PDB header:rna binding protein/rna Chain: A: PDB Molecule:19 kda protein; PDBTitle: crystal structure of cirv p19 bound to sirna 60 d1rpua_ not modelled 5.9 19 Fold:Tombusvirus P19 core protein, VP19 Superfamily:Tombusvirus P19 core protein, VP19 Family:Tombusvirus P19 core protein, VP19 61 d1s48a_ not modelled 5.9 16 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:RNA-dependent RNA-polymerase 62 c3rf1B_ not modelled 5.8 12 PDB header:ligase Chain: B: PDB Molecule:glycyl-trna synthetase alpha subunit; PDBTitle: the crystal structure of glycyl-trna synthetase subunit alpha from2 campylobacter jejuni subsp. jejuni nctc 11168 63 d1llda2 not modelled 5.8 8 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 64 d1j5wa_ not modelled 5.8 5 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 65 d2j0pa1 not modelled 5.7 24 Fold:Heme iron utilization protein-like Superfamily:Heme iron utilization protein-like Family:HemS/ChuS-like 66 c2xetB_ not modelled 5.7 7 PDB header:transport protein Chain: B: PDB Molecule:f1 capsule-anchoring protein; PDBTitle: conserved hydrophobic clusters on the surface of the caf1a usher2 c-terminal domain are important for f1 antigen assembly 67 c1q40C_ not modelled 5.7 36 PDB header:translation Chain: C: PDB Molecule:mrna transport regulator mtr2; PDBTitle: crystal structure of the c. albicans mtr2-mex67 m domain complex 68 c3d2uE_ not modelled 5.6 20 PDB header:immune system Chain: E: PDB Molecule:ul18 protein; PDBTitle: structure of ul18, a peptide-binding viral mhc mimic, bound to a host2 inhibitory receptor 69 d1f46a_ not modelled 5.6 7 Fold:TBP-like Superfamily:Cell-division protein ZipA, C-terminal domain Family:Cell-division protein ZipA, C-terminal domain 70 c1vibA_ not modelled 5.5 33 PDB header:neurotoxin Chain: A: PDB Molecule:neurotoxin b-iv; PDBTitle: nmr solution structure of the neurotoxin b-iv, 20 structures 71 d1viba_ not modelled 5.5 33 Fold:Toxic hairpin Superfamily:Neurotoxin B-IV Family:Neurotoxin B-IV 72 d2ogka1 not modelled 5.5 18 Fold:RL5-like Superfamily:RL5-like Family:SSO1042-like 73 d2b2ya2 not modelled 5.4 22 Fold:SH3-like barrel Superfamily:Chromo domain-like Family:Chromo domain 74 c2epbA_ not modelled 5.4 28 PDB header:transcription Chain: A: PDB Molecule:chromodomain-helicase-dna-binding protein 6; PDBTitle: solution structure of chromo domain 2 in chromodomain-2 helicase-dna-binding protein 6 75 c2e37B_ not modelled 5.4 17 PDB header:oxidoreductase Chain: B: PDB Molecule:l-lactate dehydrogenase; PDBTitle: structure of tt0471 protein from thermus thermophilus 76 d1oc4a2 not modelled 5.4 8 Fold:LDH C-terminal domain-like Superfamily:LDH C-terminal domain-like Family:Lactate & malate dehydrogenases, C-terminal domain 77 c1l6jA_ not modelled 5.3 43 PDB header:hydrolase Chain: A: PDB Molecule:matrix metalloproteinase-9; PDBTitle: crystal structure of human matrix metalloproteinase mmp92 (gelatinase b). 78 d1ywya1 not modelled 5.3 24 Fold:PH domain-like barrel Superfamily:PA2021-like Family:PA2021-like 79 c2lazA_ not modelled 5.2 25 PDB header:signaling protein/transcription Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1; PDBTitle: structure of the first ww domain of human smurf1 in complex with a2 mono-phosphorylated human smad1 derived peptide 80 c2lb0A_ not modelled 5.2 25 PDB header:signaling protein/transcription Chain: A: PDB Molecule:e3 ubiquitin-protein ligase smurf1; PDBTitle: structure of the first ww domain of human smurf1 in complex with a di-2 phosphorylated human smad1 derived peptide 81 c3bmzA_ not modelled 5.2 28 PDB header:biosynthetic protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: violacein biosynthetic enzyme vioe 82 c1r5mA_ not modelled 5.2 15 PDB header:transcription Chain: A: PDB Molecule:sir4-interacting protein sif2; PDBTitle: crystal structure of the c-terminal wd40 domain of sif2 83 c3h0mU_ not modelled 5.1 18 PDB header:ligase Chain: U: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit c; PDBTitle: structure of trna-dependent amidotransferase gatcab from2 aquifex aeolicus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0