Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	I	R	Q	R	R	R	A	L	T	P	E	Q	Q	Q	E	M	G	Q	Q	A	A	T	R	M	M	T	Y	P	P	V	V	M	A	H	T	V	A	V	F	L	S	F	D	G	E	L	D	T	Q	P	L	I	E	Q	L	W	R	A	G
Secondary structure
SS confidence
Disorder		?								?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		K	R	V	Y	L	P	V	L	H	P	F	S	A	G	N	L	L	F	L	N	Y	H	P	Q	S	E	L	V	M	N	R	L	K	I	H	E	P	K	L	D	V	R	D	V	L	P	L	S	R	L	D	V	L	I	T	P	L	V	A	F
Secondary structure
SS confidence
Disorder																																										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	E	Y	G	Q	R	L	G	M	G	G	G	F	Y	D	R	T	L	Q	N	W	Q	H	Y	K	T	Q	P	V	G	Y	A	H	D	C	Q	L	V	E	K	L	P	V	E	E	W	D	I	P	L	P	A	V	V	T	P	S	K	V	W
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.
Sequence		E	W
Secondary structure
SS confidence
Disorder			?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2jcb chain A Region: 2 - 182 Aligned: 177 Modelled: 181 Confidence: 100.0% Identity: 28% PDB header:ligase Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase family protein; PDBTitle: the crystal structure of 5-formyl-tetrahydrofolate2 cycloligase from bacillus anthracis (ba4489) Phyre2 PDB 1ydm chain C Region: 2 - 182 Aligned: 176 Modelled: 181 Confidence: 100.0% Identity: 29% PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein yqgn; PDBTitle: x-ray structure of northeast structural genomics target sr44 Phyre2 PDB 1sou chain A Region: 2 - 182 Aligned: 172 Modelled: 181 Confidence: 100.0% Identity: 29% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: Methenyltetrahydrofolate synthetase Phyre2 PDB 3hy4 chain A Region: 2 - 176 Aligned: 171 Modelled: 175 Confidence: 100.0% Identity: 23% PDB header:ligase Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase; PDBTitle: structure of human mthfs with n5-iminium phosphate Phyre2 PDB 1sbq chain A Region: 2 - 177 Aligned: 153 Modelled: 176 Confidence: 100.0% Identity: 24% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: Methenyltetrahydrofolate synthetase Phyre2 PDB 1u3f chain A Region: 2 - 177 Aligned: 153 Modelled: 176 Confidence: 100.0% Identity: 24% PDB header:ligase Chain: A: PDB Molecule:5,10-methenyltetrahydrofolate synthetase; PDBTitle: structural and functional characterization of a 5,10-2 methenyltetrahydrofolate synthetase from mycoplasma3 pneumoniae (gi: 13508087) Phyre2 PDB 1wkc chain A Region: 2 - 182 Aligned: 156 Modelled: 170 Confidence: 100.0% Identity: 26% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: Methenyltetrahydrofolate synthetase Phyre2 PDB 1t9k chain A Region: 12 - 180 Aligned: 162 Modelled: 167 Confidence: 78.9% Identity: 13% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: IF2B-like Phyre2 PDB 1k6d chain A Region: 98 - 174 Aligned: 74 Modelled: 77 Confidence: 70.4% Identity: 8% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: CoA transferase alpha subunit-like Phyre2 PDB 2yvk chain A Region: 12 - 180 Aligned: 160 Modelled: 169 Confidence: 66.0% Identity: 11% PDB header:isomerase Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis Phyre2 PDB 1w2w chain J Region: 107 - 180 Aligned: 72 Modelled: 74 Confidence: 61.1% Identity: 17% PDB header:isomerase Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits Phyre2 PDB 3ecs chain D Region: 107 - 180 Aligned: 72 Modelled: 73 Confidence: 50.7% Identity: 21% PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha Phyre2 PDB 3uk7 chain B Region: 11 - 117 Aligned: 107 Modelled: 107 Confidence: 48.5% Identity: 11% PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d Phyre2 PDB 1e1o chain A domain 2 Region: 130 - 153 Aligned: 24 Modelled: 24 Confidence: 36.1% Identity: 4% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain Phyre2 PDB 3rrl chain C Region: 98 - 174 Aligned: 74 Modelled: 77 Confidence: 35.2% Identity: 9% PDB header:transferase Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a; PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695 Phyre2 PDB 1wu7 chain A domain 2 Region: 130 - 153 Aligned: 24 Modelled: 23 Confidence: 35.0% Identity: 29% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain Phyre2 PDB 1bbu chain A domain 2 Region: 130 - 153 Aligned: 24 Modelled: 24 Confidence: 27.2% Identity: 8% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain Phyre2 PDB 1t5o chain A Region: 12 - 180 Aligned: 159 Modelled: 169 Confidence: 24.9% Identity: 14% Fold: NagB/RpiA/CoA transferase-like Superfamily: NagB/RpiA/CoA transferase-like Family: IF2B-like Phyre2 PDB 1qe0 chain A domain 2 Region: 130 - 153 Aligned: 24 Modelled: 24 Confidence: 23.6% Identity: 29% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain Phyre2 PDB 1h4v chain B domain 2 Region: 117 - 153 Aligned: 36 Modelled: 37 Confidence: 20.7% Identity: 33% Fold: Class II aaRS and biotin synthetases Superfamily: Class II aaRS and biotin synthetases Family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain Phyre2 1 c2jcbA_ 2 c1ydmC_ 3 d1soua_ 4 c3hy4A_ 5 d1sbqa_ 6 c1u3fA_ 7 d1wkca_ 8 d1t9ka_ 9 d1k6da_ 10 c2yvkA_ 11 c1w2wJ_ 12 c3ecsD_ 13 c3uk7B_ 14 d1e1oa2 15 c3rrlC_ 16 d1wu7a2 17 d1bbua2 18 d1t5oa_ 19 d1qe0a2 20 d1h4vb2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2jcbA_ 100.0 28 PDB header:ligase Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase family protein; PDBTitle: the crystal structure of 5-formyl-tetrahydrofolate2 cycloligase from bacillus anthracis (ba4489) 2 c1ydmC_ 100.0 29 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:hypothetical protein yqgn; PDBTitle: x-ray structure of northeast structural genomics target sr44 3 d1soua_ 100.0 29 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:Methenyltetrahydrofolate synthetase 4 c3hy4A_ 100.0 23 PDB header:ligase Chain: A: PDB Molecule:5-formyltetrahydrofolate cyclo-ligase; PDBTitle: structure of human mthfs with n5-iminium phosphate 5 d1sbqa_ 100.0 24 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:Methenyltetrahydrofolate synthetase 6 c1u3fA_ 100.0 24 PDB header:ligase Chain: A: PDB Molecule:5,10-methenyltetrahydrofolate synthetase; PDBTitle: structural and functional characterization of a 5,10-2 methenyltetrahydrofolate synthetase from mycoplasma3 pneumoniae (gi: 13508087) 7 d1wkca_ 100.0 26 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:Methenyltetrahydrofolate synthetase 8 d1t9ka_ 78.9 13 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 9 d1k6da_ 70.4 8 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 10 c2yvkA_ 66.0 11 PDB header:isomerase Chain: A: PDB Molecule:methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of 5-methylthioribose 1-phosphate2 isomerase product complex from bacillus subtilis 11 c1w2wJ_ 61.1 17 PDB header:isomerase Chain: J: PDB Molecule:5-methylthioribose-1-phosphate isomerase; PDBTitle: crystal structure of yeast ypr118w, a methylthioribose-1-2 phosphate isomerase related to regulatory eif2b subunits 12 c3ecsD_ 50.7 21 PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha 13 c3uk7B_ 48.5 11 PDB header:transferase Chain: B: PDB Molecule:class i glutamine amidotransferase-like domain-containing PDBTitle: crystal structure of arabidopsis thaliana dj-1d 14 d1e1oa2 36.1 4 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 15 c3rrlC_ 35.2 9 PDB header:transferase Chain: C: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase subunit a; PDBTitle: complex structure of 3-oxoadipate coa-transferase subunit a and b from2 helicobacter pylori 26695 16 d1wu7a2 35.0 29 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 17 d1bbua2 27.2 8 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 18 d1t5oa_ 24.9 14 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 19 d1qe0a2 23.6 29 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 20 d1h4vb2 20.7 33 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 21 c1sy7B_ not modelled 19.5 10 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase 1; PDBTitle: crystal structure of the catalase-1 from neurospora crassa, native2 structure at 1.75a resolution. 22 d1oi4a1 not modelled 18.7 11 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:DJ-1/PfpI 23 c2ywdA_ not modelled 17.5 17 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of glutamine amidotransferase 24 d1z7ma1 not modelled 17.5 28 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 25 d1kmma2 not modelled 16.1 33 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 26 d1p80a1 not modelled 15.7 24 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 27 d1m0da_ not modelled 14.5 11 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Endonuclease I (Holliday junction resolvase) 28 d1gpma2 not modelled 13.4 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 29 d1kfia2 not modelled 13.3 10 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 30 d2gfqa1 not modelled 13.3 29 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 31 c2gfqC_ not modelled 12.5 29 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:upf0204 protein ph0006; PDBTitle: structure of protein of unknown function ph0006 from pyrococcus2 horikoshii 32 c3cdkA_ not modelled 12.4 14 PDB header:transferase Chain: A: PDB Molecule:succinyl-coa:3-ketoacid-coenzyme a transferase PDBTitle: crystal structure of the co-expressed succinyl-coa2 transferase a and b complex from bacillus subtilis 33 d3pmga2 not modelled 12.3 42 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 34 d1yqea1 not modelled 11.2 23 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 35 d1ooya1 not modelled 11.2 14 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase beta subunit-like 36 c2eg5C_ not modelled 10.7 19 PDB header:transferase Chain: C: PDB Molecule:xanthosine methyltransferase; PDBTitle: the structure of xanthosine methyltransferase 37 c3racA_ not modelled 10.5 36 PDB header:ligase Chain: A: PDB Molecule:histidine-trna ligase; PDBTitle: crystal strucutre of histidine--trna ligase subunit from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446. 38 d1p5dx2 not modelled 10.3 50 Fold:Phosphoglucomutase, first 3 domains Superfamily:Phosphoglucomutase, first 3 domains Family:Phosphoglucomutase, first 3 domains 39 c1hyoB_ not modelled 10.0 32 PDB header:hydrolase Chain: B: PDB Molecule:fumarylacetoacetate hydrolase; PDBTitle: crystal structure of fumarylacetoacetate hydrolase2 complexed with 4-(hydroxymethylphosphinoyl)-3-oxo-butanoic3 acid 40 d1q7ra_ not modelled 9.8 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 41 c2bldD_ not modelled 9.6 26 PDB header:virus Chain: D: PDB Molecule:penton protein; PDBTitle: the quasi-atomic model of human adenovirus type 52 capsid (part 1) 42 d1vb5a_ not modelled 9.5 8 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:IF2B-like 43 d1fvia1 not modelled 9.0 18 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA ligase/mRNA capping enzyme postcatalytic domain 44 d1sdoa_ not modelled 8.9 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease BstyI 45 c3l7nA_ not modelled 8.8 15 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of smu.1228c 46 d1w7ab4 not modelled 8.7 22 Fold:MutS N-terminal domain-like Superfamily:DNA repair protein MutS, domain I Family:DNA repair protein MutS, domain I 47 c3bboO_ not modelled 8.6 19 PDB header:ribosome Chain: O: PDB Molecule:ribosomal protein l16; PDBTitle: homology model for the spinach chloroplast 50s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome 48 c2rnmC_ not modelled 8.4 55 PDB header:protein fibril Chain: C: PDB Molecule:small s protein; PDBTitle: structure of the het-s(218-289) prion in its amyloid form2 obtained by solid-state nmr 49 c2kkuA_ not modelled 8.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein af2351 from archaeoglobus2 fulgidus. northeast structural genomics consortium target3 att9/ontario center for structural proteomics target af2351 50 d2nv0a1 not modelled 8.2 18 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 51 c3nkgA_ not modelled 8.1 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein geba250068378; PDBTitle: crystal structure of geba250068378 from sulfurospirillum deleyianum 52 c3ot1B_ not modelled 7.9 18 PDB header:structural genomics Chain: B: PDB Molecule:4-methyl-5(b-hydroxyethyl)-thiazole monophosphate PDBTitle: crystal structure of vc2308 protein 53 c2ftcI_ not modelled 7.9 29 PDB header:ribosome Chain: I: PDB Molecule:mitochondrial ribosomal protein l16; PDBTitle: structural model for the large subunit of the mammalian mitochondrial2 ribosome 54 d3hdha1 not modelled 7.8 57 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:HCDH C-domain-like 55 d1gk8i_ not modelled 7.6 24 Fold:RuBisCO, small subunit Superfamily:RuBisCO, small subunit Family:RuBisCO, small subunit 56 d1utca2 not modelled 7.6 45 Fold:7-bladed beta-propeller Superfamily:Clathrin heavy-chain terminal domain Family:Clathrin heavy-chain terminal domain 57 d1wdka1 not modelled 7.6 67 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:HCDH C-domain-like 58 d2g39a2 not modelled 7.5 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 59 c1jqoA_ not modelled 7.5 39 PDB header:lyase Chain: A: PDB Molecule:phosphoenolpyruvate carboxylase; PDBTitle: crystal structure of c4-form phosphoenolpyruvate carboxylase from2 maize 60 d1jqoa_ not modelled 7.5 39 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 61 d2gyck1 not modelled 7.4 24 Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L16p 62 c1c9lA_ not modelled 7.4 45 PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:clathrin; PDBTitle: peptide-in-groove interactions link target proteins to the2 b-propeller of clathrin 63 d1lbqa_ not modelled 7.4 15 Fold:Chelatase-like Superfamily:Chelatase Family:Ferrochelatase 64 d1sy7a1 not modelled 7.3 10 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Catalase, C-terminal domain 65 c3b5iB_ not modelled 7.3 22 PDB header:transferase Chain: B: PDB Molecule:s-adenosyl-l-methionine:salicylic acid carboxyl PDBTitle: crystal structure of indole-3-acetic acid methyltransferase 66 d2abwa1 not modelled 7.2 17 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 67 c3a11D_ not modelled 7.0 18 PDB header:isomerase Chain: D: PDB Molecule:translation initiation factor eif-2b, delta PDBTitle: crystal structure of ribose-1,5-bisphosphate isomerase from2 thermococcus kodakaraensis kod1 68 d2j01q1 not modelled 6.9 19 Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L16p 69 d1jqna_ not modelled 6.9 33 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Phosphoenolpyruvate carboxylase 70 d1vcoa1 not modelled 6.7 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 71 c3c1nA_ not modelled 6.4 16 PDB header:transferase Chain: A: PDB Molecule:probable aspartokinase; PDBTitle: crystal structure of allosteric inhibition threonine-sensitive2 aspartokinase from methanococcus jannaschii with l-threonine 72 d1hyoa2 not modelled 6.4 32 Fold:FAH Superfamily:FAH Family:FAH 73 c3d3uA_ not modelled 6.3 21 PDB header:transferase Chain: A: PDB Molecule:4-hydroxybutyrate coa-transferase; PDBTitle: crystal structure of 4-hydroxybutyrate coa-transferase (abft-2) from2 porphyromonas gingivalis. northeast structural genomics consortium3 target pgr26 74 d1f0ya1 not modelled 6.2 67 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:HCDH C-domain-like 75 c2zakB_ not modelled 6.1 45 PDB header:hydrolase Chain: B: PDB Molecule:l-asparaginase precursor; PDBTitle: orthorhombic crystal structure of precursor e. coli isoaspartyl2 peptidase/l-asparaginase (ecaiii) with active-site t179a mutation 76 d1gsaa1 not modelled 6.0 13 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:Prokaryotic glutathione synthetase, N-terminal domain 77 d2zjrj1 not modelled 6.0 21 Fold:alpha/beta-Hammerhead Superfamily:Ribosomal protein L16p/L10e Family:Ribosomal protein L16p 78 c3kvhA_ not modelled 6.0 58 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 79 d2a9va1 not modelled 6.0 19 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 80 c1zejA_ not modelled 5.8 50 PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyacyl-coa dehydrogenase; PDBTitle: crystal structure of the 3-hydroxyacyl-coa dehydrogenase (hbd-9,2 af2017) from archaeoglobus fulgidus dsm 4304 at 2.00 a resolution 81 d1i1qb_ not modelled 5.7 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 82 d1xr4a2 not modelled 5.6 20 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 83 d1b8ta4 not modelled 5.6 33 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 84 c1bpoA_ not modelled 5.5 45 PDB header:membrane protein Chain: A: PDB Molecule:protein (clathrin); PDBTitle: clathrin heavy-chain terminal domain and linker 85 d1s6la1 not modelled 5.4 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MerB N-terminal domain-like 86 c2bs5A_ not modelled 5.3 50 PDB header:sugar binding protein Chain: A: PDB Molecule:fucose-binding lectin protein; PDBTitle: lectin from ralstonia solanacearum complexed with 2-2 fucosyllactose 87 c2ywjA_ not modelled 5.3 24 PDB header:transferase Chain: A: PDB Molecule:glutamine amidotransferase subunit pdxt; PDBTitle: crystal structure of uncharacterized conserved protein from2 methanocaldococcus jannaschii 88 d1wl8a1 not modelled 5.1 20 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT) 89 d1t3ta2 not modelled 5.1 13 Fold:Flavodoxin-like Superfamily:Class I glutamine amidotransferase-like Family:Class I glutamine amidotransferases (GAT)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0