Email l.a.kelley@imperial.ac.uk Description P0AFE8 Date Thu Jan 5 11:26:03 GMT 2012 Unique Job ID 617700bab3646338

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3rkoM_ 100.0 100 PDB header:oxidoreductase Chain: M: PDB Molecule:nadh-quinone oxidoreductase subunit m; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 2 c3rkoL_ 100.0 21 PDB header:oxidoreductase Chain: L: PDB Molecule:nadh-quinone oxidoreductase subunit l; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 3 c3rkoN_ 100.0 20 PDB header:oxidoreductase Chain: N: PDB Molecule:nadh-quinone oxidoreductase subunit n; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 4 c3rkoK_ 47.0 13 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 5 c2l3iA_ 28.1 58 PDB header:antimicrobial protein Chain: A: PDB Molecule:aoxki4a, antimicrobial peptide in spider venom; PDBTitle: oxki4a, spider derived antimicrobial peptide 6 d1a6qa1 26.4 6 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 7 d1o8bb1 21.0 21 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:D-ribose-5-phosphate isomerase (RpiA), catalytic domain 8 d1s1qa_ 16.6 31 Fold:UBC-like Superfamily:UBC-like Family:UEV domain 9 d1r6ra_ 16.6 15 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 10 c1r6rA_ 16.6 15 PDB header:viral protein Chain: A: PDB Molecule:genome polyprotein; PDBTitle: solution structure of dengue virus capsid protein reveals a2 new fold 11 c3r24A_ 16.5 33 PDB header:transferase, viral protein Chain: A: PDB Molecule:2'-o-methyl transferase; PDBTitle: crystal structure of nsp10/nsp16 complex of sars coronavirus" if2 possible 12 c3c25A_ 14.8 83 PDB header:hydrolase/dna Chain: A: PDB Molecule:noti restriction endonuclease; PDBTitle: crystal structure of noti restriction endonuclease bound to cognate2 dna 13 c3na2C_ 14.6 33 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from mine drainage2 metagenome leptospirillum rubarum 14 c3rkoF_ 14.4 9 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 15 c2kwtA_ 14.4 50 PDB header:viral protein Chain: A: PDB Molecule:protease ns2-3; PDBTitle: solution structure of ns2 [27-59] 16 c2jlnA_ 14.3 7 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 17 c3mesB_ 13.8 31 PDB header:transferase Chain: B: PDB Molecule:choline kinase; PDBTitle: crystal structure of choline kinase from cryptosporidium2 parvum iowa ii, cgd3_2030 18 d1n9wa2 13.3 63 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 19 d1xmec1 13.1 26 Fold:Single transmembrane helix Superfamily:Bacterial ba3 type cytochrome c oxidase subunit IIa Family:Bacterial ba3 type cytochrome c oxidase subunit IIa 20 c1n9wA_ 13.1 63 PDB header:biosynthetic protein Chain: A: PDB Molecule:aspartyl-trna synthetase 2; PDBTitle: crystal structure of the non-discriminating and archaeal-2 type aspartyl-trna synthetase from thermus thermophilus 21 c2latA_ not modelled 13.0 18 PDB header:membrane protein Chain: A: PDB Molecule:dolichyl-diphosphooligosaccharide--protein PDBTitle: solution structure of a human minimembrane protein ost4 22 c2kncA_ not modelled 12.8 20 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 23 c3bjuB_ not modelled 12.8 38 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: crystal structure of tetrameric form of human lysyl-trna2 synthetase 24 c2p04B_ not modelled 12.1 20 PDB header:transferase Chain: B: PDB Molecule:signal transduction histidine kinase; PDBTitle: 2.1 ang structure of the dimerized pas domain of signal transduction2 histidine kinase from nostoc punctiforme pcc 73102 with homology to3 the h-noxa/h-noba domain of the soluble guanylyl cyclase 25 d1iwga7 not modelled 12.1 13 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 26 c1b8aB_ not modelled 11.9 63 PDB header:ligase Chain: B: PDB Molecule:protein (aspartyl-trna synthetase); PDBTitle: aspartyl-trna synthetase 27 d3d37a2 not modelled 11.8 57 Fold:Phage tail proteins Superfamily:Phage tail proteins Family:Baseplate protein-like 28 c1wydB_ not modelled 11.7 50 PDB header:ligase Chain: B: PDB Molecule:hypothetical aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from sulfolobus tokodaii 29 c2re3A_ not modelled 11.7 36 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution 30 d2pila_ not modelled 11.5 18 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 31 c2voyK_ not modelled 11.5 27 PDB header:hydrolase Chain: K: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus 32 c1x55A_ not modelled 11.4 25 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase; PDBTitle: crystal structure of asparaginyl-trna synthetase from pyrococcus2 horikoshii complexed with asparaginyl-adenylate analogue 33 c1e22A_ not modelled 11.3 38 PDB header:ligase Chain: A: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase (lysu) hexagonal form complexed with2 lysine and the non-hydrolysable atp analogue amp-pcp 34 c2xgtB_ not modelled 11.3 25 PDB header:ligase Chain: B: PDB Molecule:asparaginyl-trna synthetase, cytoplasmic; PDBTitle: asparaginyl-trna synthetase from brugia malayi complexed2 with the sulphamoyl analogue of asparaginyl-adenylate 35 c2pjmA_ not modelled 11.2 25 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: structure of ribose 5-phosphate isomerase a from2 methanocaldococcus jannaschii 36 c3m6jD_ not modelled 11.1 32 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of unknown function protein from leptospirillum2 rubarum 37 c1ar1B_ not modelled 11.0 16 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 38 c1qleB_ not modelled 11.0 16 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 39 c1asyA_ not modelled 11.0 25 PDB header:complex (aminoacyl-trna synthase/trna) Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: class ii aminoacyl transfer rna synthetases: crystal2 structure of yeast aspartyl-trna synthetase complexed with3 trna asp 40 d1sfka_ not modelled 10.9 10 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 41 d1fftb2 not modelled 10.9 12 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 42 d2gf4a1 not modelled 10.8 13 Fold:immunoglobulin/albumin-binding domain-like Superfamily:Vng1086c-like Family:Vng1086c-like 43 c3sokB_ not modelled 10.5 18 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 44 c3e9hB_ not modelled 10.5 63 PDB header:ligase Chain: B: PDB Molecule:lysyl-trna synthetase; PDBTitle: lysyl-trna synthetase from bacillus stearothermophilus2 complexed with l-lysylsulfamoyl adenosine 45 d2cosa1 not modelled 10.4 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain 46 d1iapa_ not modelled 10.4 5 Fold:Regulator of G-protein signaling, RGS Superfamily:Regulator of G-protein signaling, RGS Family:Regulator of G-protein signaling, RGS 47 c3rpfC_ not modelled 10.4 17 PDB header:transferase Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad); PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695 48 c1efwA_ not modelled 10.3 38 PDB header:ligase/rna Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of aspartyl-trna synthetase from thermus2 thermophilus complexed to trnaasp from escherichia coli 49 c3m4qA_ not modelled 10.3 25 PDB header:ligase Chain: A: PDB Molecule:asparaginyl-trna synthetase, putative; PDBTitle: entamoeba histolytica asparaginyl-trna synthetase (asnrs) 50 d1sfkb_ not modelled 10.1 10 Fold:Flavivirus capsid protein C Superfamily:Flavivirus capsid protein C Family:Flavivirus capsid protein C 51 c3jzdA_ not modelled 10.1 8 PDB header:oxidoreductase Chain: A: PDB Molecule:iron-containing alcohol dehydrogenase; PDBTitle: crystal structure of putative alcohol dehedrogenase (yp_298327.1) from2 ralstonia eutropha jmp134 at 2.10 a resolution 52 d1r89a1 not modelled 10.1 31 Fold:PAP/OAS1 substrate-binding domain Superfamily:PAP/OAS1 substrate-binding domain Family:Archaeal tRNA CCA-adding enzyme substrate-binding domain 53 d1lgha_ not modelled 9.9 26 Fold:Light-harvesting complex subunits Superfamily:Light-harvesting complex subunits Family:Light-harvesting complex subunits 54 c2cosA_ not modelled 9.9 33 PDB header:transferase Chain: A: PDB Molecule:serine/threonine protein kinase lats2; PDBTitle: solution structure of rsgi ruh-038, a uba domain from mouse2 lats2 (large tumor suppressor homolog 2) 55 c3kdpH_ not modelled 9.8 25 PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 56 c3kdpG_ not modelled 9.8 25 PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 57 c1lk5C_ not modelled 9.8 11 PDB header:isomerase Chain: C: PDB Molecule:d-ribose-5-phosphate isomerase; PDBTitle: structure of the d-ribose-5-phosphate isomerase from2 pyrococcus horikoshii 58 c1ceuA_ not modelled 9.8 17 PDB header:viral protein Chain: A: PDB Molecule:protein (hiv-1 regulatory protein n-terminal PDBTitle: nmr structure of the (1-51) n-terminal domain of the hiv-12 regulatory protein 59 c2i3fA_ not modelled 9.8 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:glycolipid transfer-like protein; PDBTitle: crystal structure of a glycolipid transfer-like protein2 from galdieria sulphuraria 60 c1m0sA_ not modelled 9.8 22 PDB header:isomerase Chain: A: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: northeast structural genomics consortium (nesg id ir21) 61 d2f05a1 not modelled 9.7 33 Fold:PAH2 domain Superfamily:PAH2 domain Family:PAH2 domain 62 c2kluA_ not modelled 9.7 19 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 63 d1iwga8 not modelled 9.7 17 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 64 c1m93A_ not modelled 9.6 12 PDB header:viral protein Chain: A: PDB Molecule:serine proteinase inhibitor 2; PDBTitle: 1.65 a structure of cleaved viral serpin crma 65 c1lkzB_ not modelled 9.6 13 PDB header:isomerase Chain: B: PDB Molecule:ribose 5-phosphate isomerase a; PDBTitle: crystal structure of d-ribose-5-phosphate isomerase (rpia)2 from escherichia coli. 66 c4a1cK_ not modelled 9.6 0 PDB header:ribosome Chain: K: PDB Molecule:60s ribosomal protein l27a; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 67 c2q1kA_ not modelled 9.6 44 PDB header:chaperone Chain: A: PDB Molecule:asce; PDBTitle: cyrstal structure of asce from aeromonas hydrophilla 68 d1oqwa_ not modelled 9.4 21 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 69 d3c07a2 not modelled 9.4 15 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 70 c3kwmC_ not modelled 9.4 25 PDB header:isomerase Chain: C: PDB Molecule:ribose-5-phosphate isomerase a; PDBTitle: crystal structure of ribose-5-isomerase a 71 d1p9qc3 not modelled 9.3 22 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 72 c1m57H_ not modelled 9.3 16 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 73 c2k21A_ not modelled 9.3 24 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 74 c2hfvA_ not modelled 9.3 4 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa1041; PDBTitle: solution nmr structure of protein rpa1041 from pseudomonas2 aeruginosa. northeast structural genomics consortium3 target pat90. 75 d1l0wa3 not modelled 9.2 38 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 76 d1swxa_ not modelled 9.1 38 Fold:Glycolipid transfer protein, GLTP Superfamily:Glycolipid transfer protein, GLTP Family:Glycolipid transfer protein, GLTP 77 d1zvpa1 not modelled 9.1 11 Fold:Ferredoxin-like Superfamily:ACT-like Family:VC0802-like 78 d3dtub2 not modelled 9.1 16 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 79 d1ej5a_ not modelled 9.1 29 Fold:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain Superfamily:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain Family:Wiscott-Aldrich syndrome protein, WASP, C-terminal domain 80 c3cu4A_ not modelled 9.1 17 PDB header:electron transport Chain: A: PDB Molecule:cytochrome c family protein; PDBTitle: omcf, outer membrance cytochrome f from geobacter2 sulfurreducens 81 d2hfva1 not modelled 9.1 4 Fold:Ferredoxin-like Superfamily:GlnB-like Family:RPA1041-like 82 d1t95a3 not modelled 9.1 22 Fold:Ferredoxin-like Superfamily:EF-G C-terminal domain-like Family:Hypothetical protein AF0491, C-terminal domain 83 c3m8jA_ not modelled 9.1 11 PDB header:transcription Chain: A: PDB Molecule:focb protein; PDBTitle: crystal structure of e.coli focb at 1.4 a resolution 84 c1uj6A_ not modelled 9.1 13 PDB header:isomerase Chain: A: PDB Molecule:ribose 5-phosphate isomerase; PDBTitle: crystal structure of thermus thermophilus ribose-5-phosphate isomerase2 complexed with arabinose-5-phosphate 85 c3pisA_ not modelled 9.0 31 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:kazal-type serine protease inhibitor spi-1; PDBTitle: crystal structure of carcinoscorpius rotundicauda serine protease2 inhibitor domain 1 86 d1c0aa3 not modelled 9.0 25 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 87 d1c8sa_ not modelled 9.0 4 Fold:Family A G protein-coupled receptor-like Superfamily:Family A G protein-coupled receptor-like Family:Bacteriorhodopsin-like 88 c3i7fA_ not modelled 8.9 13 PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica 89 c1eqrC_ not modelled 8.9 25 PDB header:ligase Chain: C: PDB Molecule:aspartyl-trna synthetase; PDBTitle: crystal structure of free aspartyl-trna synthetase from2 escherichia coli 90 c2kseA_ not modelled 8.9 20 PDB header:transferase Chain: A: PDB Molecule:sensor protein qsec; PDBTitle: backbone structure of the membrane domain of e. coli2 histidine kinase receptor qsec, center for structures of3 membrane proteins (csmp) target 4311c 91 c2fxpA_ not modelled 8.8 12 PDB header:viral protein Chain: A: PDB Molecule:spike glycoprotein; PDBTitle: solution structure of the sars-coronavirus hr2 domain 92 c2k1aA_ not modelled 8.8 12 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 93 d1b8aa2 not modelled 8.8 63 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain 94 d2b1xa1 not modelled 8.7 80 Fold:ISP domain Superfamily:ISP domain Family:Ring hydroxylating alpha subunit ISP domain 95 c1w2lA_ not modelled 8.7 17 PDB header:oxidoreductase Chain: A: PDB Molecule:cytochrome oxidase subunit ii; PDBTitle: cytochrome c domain of caa3 oxygen oxidoreductase 96 d1oedb_ not modelled 8.7 15 Fold:Neurotransmitter-gated ion-channel transmembrane pore Superfamily:Neurotransmitter-gated ion-channel transmembrane pore Family:Neurotransmitter-gated ion-channel transmembrane pore 97 c3bs7A_ not modelled 8.7 13 PDB header:signaling protein Chain: A: PDB Molecule:protein aveugle; PDBTitle: crystal structure of the sterile alpha motif (sam) domain2 of hyphen/aveugle 98 d1vzva_ not modelled 8.6 33 Fold:Herpes virus serine proteinase, assemblin Superfamily:Herpes virus serine proteinase, assemblin Family:Herpes virus serine proteinase, assemblin 99 d1eova2 not modelled 8.6 25 Fold:Class II aaRS and biotin synthetases Superfamily:Class II aaRS and biotin synthetases Family:Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain