Email l.a.kelley@imperial.ac.uk Description P0A823 Date Thu Jan 5 11:06:41 GMT 2012 Unique Job ID 601b1508541f07d7

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3i4oA_ 91.6 20 PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-1; PDBTitle: crystal structure of translation initiation factor 1 from2 mycobacterium tuberculosis 2 c1zn1L_ 87.1 17 PDB header:biosynthetic/structural protein/rna Chain: L: PDB Molecule:30s ribosomal protein s12; PDBTitle: coordinates of rrf fitted into cryo-em map of the 70s post-2 termination complex 3 c3fovA_ 87.0 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris 4 c2oqkA_ 86.8 31 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 5 c1xdoB_ 85.1 19 PDB header:transferase Chain: B: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of escherichia coli polyphosphate kinase 6 d2o8ra4 84.2 21 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 7 d1ah9a_ 83.8 21 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 8 d2uubl1 83.5 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 9 d1d7qa_ 83.0 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 10 d1xdpa4 82.7 19 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 11 c2o8rA_ 77.0 21 PDB header:transferase Chain: A: PDB Molecule:polyphosphate kinase; PDBTitle: crystal structure of polyphosphate kinase from2 porphyromonas gingivalis 12 d1jt8a_ 75.0 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 13 d2qall1 74.9 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 14 c2zkql_ 72.0 21 PDB header:ribosomal protein/rna Chain: L: PDB Molecule: PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 15 c1s1hL_ 70.3 24 PDB header:ribosome Chain: L: PDB Molecule:40s ribosomal protein s23; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 16 d1i94l_ 69.3 26 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 17 c3m9bK_ 68.6 27 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 18 c2xzmL_ 68.5 15 PDB header:ribosome Chain: L: PDB Molecule:40s ribosomal protein s12; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 19 c2vldA_ 66.2 11 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 20 c3m0zD_ 62.1 38 PDB header:lyase Chain: D: PDB Molecule:putative aldolase; PDBTitle: crystal structure of putative aldolase from klebsiella2 pneumoniae. 21 d1hr0w_ not modelled 59.7 24 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 22 c2a5hC_ not modelled 57.9 19 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 23 c2dgyA_ not modelled 53.5 12 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 24 d1v0wa2 not modelled 49.1 17 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Phospholipase D 25 d1u0la1 not modelled 45.8 16 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 26 c3fp9E_ not modelled 43.3 26 PDB header:hydrolase Chain: E: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of intern domain of proteasome-associated2 atpase, mycobacterium tuberculosis 27 d2ebfx2 not modelled 42.6 20 Fold:EreA/ChaN-like Superfamily:EreA/ChaN-like Family:PMT domain-like 28 c1pk8D_ not modelled 41.6 19 PDB header:membrane protein Chain: D: PDB Molecule:rat synapsin i; PDBTitle: crystal structure of rat synapsin i c domain complexed to2 ca.atp 29 d2ga5a1 not modelled 34.5 23 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 30 d1ekga_ not modelled 32.7 28 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 31 c3muxB_ not modelled 31.6 33 PDB header:lyase Chain: B: PDB Molecule:putative 4-hydroxy-2-oxoglutarate aldolase; PDBTitle: the crystal structure of a putative 4-hydroxy-2-oxoglutarate aldolase2 from bacillus anthracis to 1.45a 32 c3m6yA_ not modelled 29.3 31 PDB header:lyase Chain: A: PDB Molecule:4-hydroxy-2-oxoglutarate aldolase; PDBTitle: structure of 4-hydroxy-2-oxoglutarate aldolase from bacillus cereus at2 1.45 a resolution. 33 c2qs7D_ not modelled 26.2 32 PDB header:oxidoreductase Chain: D: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative oxidoreductase of the dsre/dsrf-like2 family (sso1126) from sulfolobus solfataricus p2 at 2.09 a resolution 34 c2pd2A_ not modelled 25.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein st0148; PDBTitle: crystal structure of (st0148) conserved hypothetical from sulfolobus2 tokodaii strain7 35 d2p97a1 not modelled 25.6 10 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Ava3068-like 36 c1nm3B_ not modelled 24.2 21 PDB header:electron transport Chain: B: PDB Molecule:protein hi0572; PDBTitle: crystal structure of heamophilus influenza hybrid-prx5 37 d1i7na2 not modelled 23.5 15 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Synapsin C-terminal domain 38 d2cv4a1 not modelled 21.1 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 39 d1byra_ not modelled 20.6 24 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Nuclease 40 c1yjxD_ not modelled 20.1 19 PDB header:isomerase, hydrolase Chain: D: PDB Molecule:phosphoglycerate mutase 1; PDBTitle: crystal structure of human b type phosphoglycerate mutase 41 c3m9pA_ not modelled 19.6 13 PDB header:dna binding protein/dna Chain: A: PDB Molecule:male-specific lethal 3 homolog; PDBTitle: human msl3 chromodomain bound to dna and h4k20me1 peptide 42 c3pnxF_ not modelled 19.0 33 PDB header:transferase Chain: F: PDB Molecule:putative sulfurtransferase dsre; PDBTitle: crystal structure of a putative sulfurtransferase dsre (swol_2425)2 from syntrophomonas wolfei str. goettingen at 1.92 a resolution 43 c2r2dC_ not modelled 18.9 15 PDB header:hydrolase Chain: C: PDB Molecule:zn-dependent hydrolases; PDBTitle: structure of a quorum-quenching lactonase (aiib) from agrobacterium2 tumefaciens 44 c3s9xA_ not modelled 18.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:asch domain; PDBTitle: high resolution crystal structure of asch domain from lactobacillus2 crispatus jv v101 45 d2rdea2 not modelled 18.5 11 Fold:Split barrel-like Superfamily:PilZ domain-like Family:PilZ domain-associated domain 46 d1e32a1 not modelled 17.7 19 Fold:Double psi beta-barrel Superfamily:ADC-like Family:Cdc48 N-terminal domain-like 47 d2okfa1 not modelled 17.2 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XisH-like 48 d1jx7a_ not modelled 17.2 13 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 49 d1xdpa3 not modelled 17.1 14 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Polyphosphate kinase C-terminal domain 50 c3dnxA_ not modelled 16.9 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein spo1766; PDBTitle: spo1766 protein of unknown function from silicibacter pomeroyi. 51 d2inba1 not modelled 16.4 20 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:XisH-like 52 d1o12a1 not modelled 15.2 21 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:N-acetylglucosamine-6-phosphate deacetylase, NagA 53 c3h43F_ not modelled 14.9 17 PDB header:hydrolase Chain: F: PDB Molecule:proteasome-activating nucleotidase; PDBTitle: n-terminal domain of the proteasome-activating nucleotidase2 of methanocaldococcus jannaschii 54 c3m9qA_ not modelled 14.8 9 PDB header:dna binding protein Chain: A: PDB Molecule:protein male-specific lethal-3; PDBTitle: drosophila msl3 chromodomain 55 c2br6A_ not modelled 14.7 16 PDB header:hydrolase Chain: A: PDB Molecule:aiia-like protein; PDBTitle: crystal structure of quorum-quenching n-acyl homoserine2 lactone lactonase 56 d1g94a2 not modelled 14.7 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 57 c3dcyA_ not modelled 13.7 19 PDB header:apoptosis regulator Chain: A: PDB Molecule:regulator protein; PDBTitle: crystal structure a tp53-induced glycolysis and apoptosis2 regulator protein from homo sapiens. 58 d2fqla1 not modelled 12.8 19 Fold:N domain of copper amine oxidase-like Superfamily:Frataxin/Nqo15-like Family:Frataxin-like 59 c3o27B_ not modelled 12.6 19 PDB header:dna binding protein Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of c68 from the hybrid virus-plasmid pssvx 60 d1l1sa_ not modelled 11.5 20 Fold:DsrEFH-like Superfamily:DsrEFH-like Family:DsrEF-like 61 c3tinA_ not modelled 11.5 33 PDB header:ligase Chain: A: PDB Molecule:ttl protein; PDBTitle: tubulin tyrosine ligase 62 d1pk8a2 not modelled 11.4 23 Fold:ATP-grasp Superfamily:Glutathione synthetase ATP-binding domain-like Family:Synapsin C-terminal domain 63 c2wg6L_ not modelled 11.4 16 PDB header:transcription,hydrolase Chain: L: PDB Molecule:general control protein gcn4, PDBTitle: proteasome-activating nucleotidase (pan) n-domain (57-134)2 from archaeoglobus fulgidus fused to gcn4, p61a mutant 64 c2fb6A_ not modelled 11.0 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of conserved protein of unknown function bt1422 from2 bacteroides thetaiotaomicron 65 c2wagA_ not modelled 10.7 11 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme, putative; PDBTitle: the structure of a family 25 glycosyl hydrolase from2 bacillus anthracis. 66 c2qpqC_ not modelled 10.5 13 PDB header:transport protein Chain: C: PDB Molecule:protein bug27; PDBTitle: structure of bug27 from bordetella pertussis 67 d1qnia1 not modelled 10.3 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 68 c3e9eB_ not modelled 10.0 9 PDB header:hydrolase Chain: B: PDB Molecule:zgc:56074; PDBTitle: structure of full-length h11a mutant form of tigar from danio rerio 69 c3aj3A_ not modelled 10.0 13 PDB header:hydrolase Chain: A: PDB Molecule:4-pyridoxolactonase; PDBTitle: crystal structure of selenomethionine substituted 4-pyridoxolactonase2 from mesorhizobium loti 70 c3i38H_ not modelled 9.9 17 PDB header:chaperone Chain: H: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 71 c2rcnA_ not modelled 9.6 20 PDB header:hydrolase Chain: A: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of the ribosomal interacting gtpase yjeq from the2 enterobacterial species salmonella typhimurium. 72 d2gjpa2 not modelled 9.3 6 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 73 d1ea9c3 not modelled 8.9 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 74 d1s98a_ not modelled 8.9 11 Fold:HesB-like domain Superfamily:HesB-like domain Family:HesB-like domain 75 d1t62a_ not modelled 8.5 28 Fold:PUA domain-like Superfamily:PUA domain-like Family:Hypothetical protein EF3133 76 c2vpmB_ not modelled 8.5 21 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 77 c1u0lB_ not modelled 8.4 16 PDB header:hydrolase Chain: B: PDB Molecule:probable gtpase engc; PDBTitle: crystal structure of yjeq from thermotoga maritima 78 d1nm3a2 not modelled 8.4 17 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 79 d1pkla1 not modelled 7.8 21 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 80 c1wn4A_ not modelled 7.7 36 PDB header:plant protein Chain: A: PDB Molecule:vontr protein; PDBTitle: nmr structure of vontr 81 d1ua7a2 not modelled 7.5 7 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 82 d1a3xa1 not modelled 7.4 27 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 83 d3e9va1 not modelled 7.3 18 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 84 c3dhuC_ not modelled 7.0 12 PDB header:hydrolase Chain: C: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum 85 c2yv5A_ not modelled 7.0 18 PDB header:hydrolase Chain: A: PDB Molecule:yjeq protein; PDBTitle: crystal structure of yjeq from aquifex aeolicus 86 c3bmwA_ not modelled 6.7 13 PDB header:transferase Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase; PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor 87 c1bplA_ not modelled 6.6 9 PDB header:glycosyltransferase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: glycosyltransferase 88 d1lkxa_ not modelled 6.4 8 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Motor proteins 89 d1zbsa2 not modelled 6.4 15 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:BadF/BadG/BcrA/BcrD-like 90 d1cw0a_ not modelled 6.3 16 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Very short patch repair (VSR) endonuclease 91 c2zfnA_ not modelled 6.2 40 PDB header:transferase Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: self-acetylation mediated histone h3 lysine 56 acetylation by rtt109 92 c3d35A_ not modelled 6.2 40 PDB header:transferase Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: crystal structure of rtt109-ac-coa complex 93 d2z15a1 not modelled 5.9 14 Fold:BTG domain-like Superfamily:BTG domain-like Family:BTG domain-like 94 c3i38L_ not modelled 5.9 18 PDB header:chaperone Chain: L: PDB Molecule:putative chaperone dnaj; PDBTitle: structure of a putative chaperone protein dnaj from klebsiella2 pneumoniae subsp. pneumoniae mgh 78578 95 c3cz7A_ not modelled 5.9 40 PDB header:replication Chain: A: PDB Molecule:regulator of ty1 transposition protein 109; PDBTitle: molecular basis for the autoregulation of the protein acetyl2 transferase rtt109 96 c1i7nA_ not modelled 5.8 15 PDB header:neuropeptide Chain: A: PDB Molecule:synapsin ii; PDBTitle: crystal structure analysis of the c domain of synapsin ii2 from rat brain 97 c1ud8A_ not modelled 5.8 0 PDB header:hydrolase Chain: A: PDB Molecule:amylase; PDBTitle: crystal structure of amyk38 with lithium ion 98 c1sg3A_ not modelled 5.8 13 PDB header:hydrolase Chain: A: PDB Molecule:allantoicase; PDBTitle: structure of allantoicase 99 c2nw0B_ not modelled 5.7 17 PDB header:hydrolase Chain: B: PDB Molecule:plyb; PDBTitle: crystal structure of a lysin