Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	R	V	N	P	L	S	S	L	S	L	L	A	V	L	V	L	A	G	C	S	S	Q	A	P	Q	P	L	K	K	G	E	K	A	I	D	V	A	S	V	V	R	Q	K	M	P	A	S	V	K	D	R	D	A	W	A	K	D	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?										?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?								?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		A	T	T	F	E	S	Q	G	L	A	P	T	L	E	N	V	C	S	V	L	A	V	A	Q	Q	E	S	N	Y	Q	A	D	P	A	V	P	G	L	S	K	I	A	W	Q	E	I	D	R	R	A	E	R	M	H	I	P	A	F	L	V
Secondary structure
SS confidence
Disorder								?																	?	?	?	?	?	?		?	?	?	?		?	?														?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		H	T	A	L	K	I	K	S	P	N	G	K	S	Y	S	E	R	L	D	S	V	R	T	E	K	Q	L	S	A	I	F	D	D	L	I	N	M	V	P	M	G	Q	T	L	F	G	S	L	N	P	V	R	T	G	G	P	M	Q	V	S
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?	?									?	?																?	?	?	?	?	?	?	?					?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		I	A	F	A	E	Q	H	T	K	G	Y	P	W	K	M	D	G	T	V	R	Q	E	V	F	S	R	R	G	G	L	W	F	G	T	Y	H	L	L	N	Y	P	A	S	Y	S	A	P	I	Y	R	F	A	D	F	N	A	G	W	Y	A
Secondary structure
SS confidence
Disorder								?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		S	R	N	A	A	F	Q	N	A	V	S	K	A	S	G	V	K	L	A	L	D	G	D	L	I	R	Y	D	S	K	E	P	G	K	T	E	L	A	T	R	K	L	A	A	K	L	G	M	S	D	S	E	I	R	R	Q	L	E	K	G
Secondary structure
SS confidence
Disorder			?												?	?													?	?	?	?	?	?													?	?	?	?										?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		D	S	F	S	F	E	E	T	A	L	Y	K	K	V	Y	Q	L	A	E	T	K	T	G	K	S	L	P	R	E	M	L	P	G	I	Q	L	E	S	P	K	I	T	R	N	L	T	T	A	W	F	A	K	R	V	D	E	R	R	A	R
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?												?	?	?	?		?	?	?					?	?		?	?	?		?	?
Disorder confidence
		.	.	.	.
Sequence		C	M	K	Q
Secondary structure
SS confidence
Disorder			?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qsa chain A domain 2 Region: 56 - 237 Aligned: 102 Modelled: 108 Confidence: 93.0% Identity: 25% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: Bacterial muramidase, catalytic domain Phyre2 PDB 1sly chain A Region: 79 - 237 Aligned: 83 Modelled: 85 Confidence: 82.0% Identity: 31% PDB header:glycosyltransferase Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase; PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a Phyre2 PDB 3ct5 chain A Region: 52 - 92 Aligned: 39 Modelled: 41 Confidence: 71.0% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail Phyre2 PDB 2y8p chain A Region: 88 - 237 Aligned: 117 Modelled: 117 Confidence: 70.1% Identity: 11% PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli Phyre2 PDB 1gbs chain A Region: 56 - 96 Aligned: 36 Modelled: 41 Confidence: 70.0% Identity: 11% Fold: Lysozyme-like Superfamily: Lysozyme-like Family: G-type lysozyme Phyre2 PDB 3mgw chain A Region: 19 - 96 Aligned: 70 Modelled: 75 Confidence: 69.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme Phyre2 PDB 3gxk chain B Region: 53 - 92 Aligned: 35 Modelled: 40 Confidence: 65.6% Identity: 11% PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9 Phyre2 PDB 3csq chain C Region: 57 - 92 Aligned: 34 Modelled: 36 Confidence: 54.9% Identity: 24% PDB header:hydrolase Chain: C: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail Phyre2 PDB 1kyq chain A domain 2 Region: 96 - 156 Aligned: 61 Modelled: 58 Confidence: 50.6% Identity: 21% Fold: Siroheme synthase middle domains-like Superfamily: Siroheme synthase middle domains-like Family: Siroheme synthase middle domains-like Phyre2 PDB 2dt5 chain A domain 1 Region: 282 - 297 Aligned: 16 Modelled: 16 Confidence: 43.6% Identity: 19% Fold: DNA/RNA-binding 3-helical bundle Superfamily: "Winged helix" DNA-binding domain Family: Transcriptional repressor Rex, N-terminal domain Phyre2 PDB 1kyq chain C Region: 96 - 157 Aligned: 62 Modelled: 58 Confidence: 36.9% Identity: 23% PDB header:oxidoreductase, lyase Chain: C: PDB Molecule:siroheme biosynthesis protein met8; PDBTitle: met8p: a bifunctional nad-dependent dehydrogenase and2 ferrochelatase involved in siroheme synthesis. Phyre2 PDB 1itk chain B Region: 133 - 293 Aligned: 159 Modelled: 161 Confidence: 35.0% Identity: 15% PDB header:oxidoreductase Chain: B: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of catalase-peroxidase from haloarcula2 marismortui Phyre2 PDB 3bbz chain A Region: 132 - 156 Aligned: 25 Modelled: 25 Confidence: 34.3% Identity: 32% PDB header:viral protein, replication Chain: A: PDB Molecule:p protein; PDBTitle: structure of the nucleocapsid-binding domain from the mumps2 virus phosphoprotein Phyre2 PDB 2wsc chain L Region: 14 - 58 Aligned: 45 Modelled: 45 Confidence: 33.9% Identity: 24% PDB header:photosynthesis Chain: L: PDB Molecule:photosystem i reaction center subunit xi, PDBTitle: improved model of plant photosystem i Phyre2 PDB 1af7 chain A domain 1 Region: 66 - 143 Aligned: 75 Modelled: 75 Confidence: 30.1% Identity: 13% Fold: Chemotaxis receptor methyltransferase CheR, N-terminal domain Superfamily: Chemotaxis receptor methyltransferase CheR, N-terminal domain Family: Chemotaxis receptor methyltransferase CheR, N-terminal domain Phyre2 PDB 1ub2 chain A Region: 260 - 293 Aligned: 34 Modelled: 34 Confidence: 29.9% Identity: 38% PDB header:oxidoreductase Chain: A: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of catalase-peroxidase from synechococcus pcc 7942 Phyre2 PDB 2eyq chain A domain 6 Region: 136 - 156 Aligned: 21 Modelled: 21 Confidence: 26.4% Identity: 38% Fold: TRCF domain-like Superfamily: TRCF domain-like Family: TRCF domain Phyre2 PDB 3kxa chain D Region: 247 - 304 Aligned: 55 Modelled: 57 Confidence: 26.3% Identity: 25% PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae Phyre2 PDB 1tc3 chain C Region: 273 - 297 Aligned: 25 Modelled: 25 Confidence: 25.1% Identity: 28% Fold: DNA/RNA-binding 3-helical bundle Superfamily: Homeodomain-like Family: Recombinase DNA-binding domain Phyre2 PDB 2evr chain A domain 2 Region: 181 - 271 Aligned: 71 Modelled: 74 Confidence: 24.9% Identity: 25% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: NlpC/P60 Phyre2 1 d1qsaa2 2 c1slyA_ 3 c3ct5A_ 4 c2y8pA_ 5 d1gbsa_ 6 c3mgwA_ 7 c3gxkB_ 8 c3csqC_ 9 d1kyqa2 10 d2dt5a1 11 c1kyqC_ 12 c1itkB_ 13 c3bbzA_ 14 c2wscL_ 15 d1af7a1 16 c1ub2A_ 17 d2eyqa6 18 c3kxaD_ 19 d1tc3c_ 20 d2evra2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1qsaa2 93.0 25 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:Bacterial muramidase, catalytic domain 2 c1slyA_ 82.0 31 PDB header:glycosyltransferase Chain: A: PDB Molecule:70-kda soluble lytic transglycosylase; PDBTitle: complex of the 70-kda soluble lytic transglycosylase with2 bulgecin a 3 c3ct5A_ 71.0 23 PDB header:hydrolase Chain: A: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall degrading enzyme2 in the bacteriophage phi29 tail 4 c2y8pA_ 70.1 11 PDB header:lyase Chain: A: PDB Molecule:endo-type membrane-bound lytic murein transglycosylase a; PDBTitle: crystal structure of an outer membrane-anchored endolytic2 peptidoglycan lytic transglycosylase (mlte) from3 escherichia coli 5 d1gbsa_ 70.0 11 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:G-type lysozyme 6 c3mgwA_ 69.0 13 PDB header:hydrolase Chain: A: PDB Molecule:lysozyme g; PDBTitle: thermodynamics and structure of a salmon cold-active goose-type2 lysozyme 7 c3gxkB_ 65.6 11 PDB header:hydrolase Chain: B: PDB Molecule:goose-type lysozyme 1; PDBTitle: the crystal structure of g-type lysozyme from atlantic cod2 (gadus morhua l.) in complex with nag oligomers sheds new3 light on substrate binding and the catalytic mechanism.4 native structure to 1.9 8 c3csqC_ 54.9 24 PDB header:hydrolase Chain: C: PDB Molecule:morphogenesis protein 1; PDBTitle: crystal and cryoem structural studies of a cell wall2 degrading enzyme in the bacteriophage phi29 tail 9 d1kyqa2 50.6 21 Fold:Siroheme synthase middle domains-like Superfamily:Siroheme synthase middle domains-like Family:Siroheme synthase middle domains-like 10 d2dt5a1 43.6 19 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional repressor Rex, N-terminal domain 11 c1kyqC_ 36.9 23 PDB header:oxidoreductase, lyase Chain: C: PDB Molecule:siroheme biosynthesis protein met8; PDBTitle: met8p: a bifunctional nad-dependent dehydrogenase and2 ferrochelatase involved in siroheme synthesis. 12 c1itkB_ 35.0 15 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of catalase-peroxidase from haloarcula2 marismortui 13 c3bbzA_ 34.3 32 PDB header:viral protein, replication Chain: A: PDB Molecule:p protein; PDBTitle: structure of the nucleocapsid-binding domain from the mumps2 virus phosphoprotein 14 c2wscL_ 33.9 24 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem i reaction center subunit xi, PDBTitle: improved model of plant photosystem i 15 d1af7a1 30.1 13 Fold:Chemotaxis receptor methyltransferase CheR, N-terminal domain Superfamily:Chemotaxis receptor methyltransferase CheR, N-terminal domain Family:Chemotaxis receptor methyltransferase CheR, N-terminal domain 16 c1ub2A_ 29.9 38 PDB header:oxidoreductase Chain: A: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of catalase-peroxidase from synechococcus pcc 7942 17 d2eyqa6 26.4 38 Fold:TRCF domain-like Superfamily:TRCF domain-like Family:TRCF domain 18 c3kxaD_ 26.3 25 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of ngo0477 from neisseria gonorrhoeae 19 d1tc3c_ 25.1 28 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Recombinase DNA-binding domain 20 d2evra2 24.9 25 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 21 d1pdnc_ not modelled 24.7 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Paired domain 22 c2dw3A_ not modelled 22.6 46 PDB header:photosynthesis Chain: A: PDB Molecule:intrinsic membrane protein pufx; PDBTitle: solution structure of the rhodobacter sphaeroides pufx2 membrane protein 23 c2qsrA_ not modelled 22.5 10 PDB header:transcription Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of c-terminal domain of transcription-repair2 coupling factor 24 c2ql2A_ not modelled 21.5 27 PDB header:transcription/dna Chain: A: PDB Molecule:transcription factor e2-alpha; PDBTitle: crystal structure of the basic-helix-loop-helix domains of2 the heterodimer e47/neurod1 bound to dna 25 c3h4zC_ not modelled 20.8 12 PDB header:allergen Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein 26 c1n6dE_ not modelled 19.8 10 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: tricorn protease in complex with tetrapeptide chloromethyl2 ketone derivative 27 c1k32E_ not modelled 19.8 10 PDB header:hydrolase Chain: E: PDB Molecule:tricorn protease; PDBTitle: crystal structure of the tricorn protease 28 c6paxA_ not modelled 19.6 17 PDB header:gene regulation/dna Chain: A: PDB Molecule:homeobox protein pax-6; PDBTitle: crystal structure of the human pax-6 paired domain-dna2 complex reveals a general model for pax protein-dna3 interactions 29 d2o3aa1 not modelled 19.2 19 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF0751-like 30 d1a6qa1 not modelled 19.1 24 Fold:Another 3-helical bundle Superfamily:Protein serine/threonine phosphatase 2C, C-terminal domain Family:Protein serine/threonine phosphatase 2C, C-terminal domain 31 d1x2ma1 not modelled 19.0 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 32 c1ee8A_ not modelled 18.6 31 PDB header:dna binding protein Chain: A: PDB Molecule:mutm (fpg) protein; PDBTitle: crystal structure of mutm (fpg) protein from thermus thermophilus hb8 33 c3g9wA_ not modelled 17.7 12 PDB header:cell adhesion Chain: A: PDB Molecule:talin-2; PDBTitle: crystal structure of talin2 f2-f3 in complex with the integrin beta1d2 cytoplasmic tail 34 c3dhiA_ not modelled 17.1 17 PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 4-monooxygenase hydroxylase alpha subunit; PDBTitle: crystal structure of reduced toluene 4-monoxygenase hydroxylase2 complexed with effector protein 35 d1txga1 not modelled 17.0 31 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:Glycerol-3-phosphate dehydrogenase 36 d1rioa_ not modelled 16.9 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 37 d1ul1x1 not modelled 15.5 15 Fold:SAM domain-like Superfamily:5' to 3' exonuclease, C-terminal subdomain Family:5' to 3' exonuclease, C-terminal subdomain 38 c2dt5A_ not modelled 15.4 19 PDB header:dna binding protein Chain: A: PDB Molecule:at-rich dna-binding protein; PDBTitle: crystal structure of ttha1657 (at-rich dna-binding protein) from2 thermus thermophilus hb8 39 c3ketA_ not modelled 15.1 31 PDB header:transcription/dna Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex; PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator 40 c1go4F_ not modelled 13.7 10 PDB header:cell cycle Chain: F: PDB Molecule:mad1 (mitotic arrest deficient)-like 1; PDBTitle: crystal structure of mad1-mad2 reveals a conserved mad22 binding motif in mad1 and cdc20. 41 d2cqxa1 not modelled 13.5 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 42 d1llib_ not modelled 13.3 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 43 d1s69a_ not modelled 13.1 17 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 44 d1uhsa_ not modelled 12.9 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 45 c2di7A_ not modelled 12.6 22 PDB header:structural protein Chain: A: PDB Molecule:bk158_1; PDBTitle: solution structure of the filamin domain from human bk158_12 protein 46 c2bmmA_ not modelled 12.6 11 PDB header:oxygen storage/transport Chain: A: PDB Molecule:thermostable hemoglobin from thermobifida fusca; PDBTitle: x-ray structure of a novel thermostable hemoglobin from the2 actinobacterium thermobifida fusca 47 c3mmyF_ not modelled 12.5 33 PDB header:nuclear protein Chain: F: PDB Molecule:nuclear pore complex protein nup98; PDBTitle: structural and functional analysis of the interaction between the2 nucleoporin nup98 and the mrna export factor rae1 48 c3f6wE_ not modelled 11.6 12 PDB header:dna binding protein Chain: E: PDB Molecule:xre-family like protein; PDBTitle: xre-family like protein from pseudomonas syringae pv. tomato str.2 dc3000 49 d1vhna_ not modelled 11.5 12 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 50 d1s95a_ not modelled 11.2 18 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 51 c2k25A_ not modelled 10.7 18 PDB header:unknown function Chain: A: PDB Molecule:ubb; PDBTitle: automated nmr structure of the ubb by fapsy 52 d1k32a4 not modelled 10.7 16 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Tail specific protease, catalytic domain 53 d1j5ya1 not modelled 10.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like 54 c2fxhB_ not modelled 10.2 29 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase-peroxidase protein; PDBTitle: crystal structure of katg at ph 6.5 55 c2b2qB_ not modelled 10.2 29 PDB header:oxidoreductase Chain: B: PDB Molecule:catalase-peroxidase; PDBTitle: crystal structure of native catalase-peroxidase katg at2 ph7.5 56 c2o01L_ not modelled 10.1 24 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem i reaction center subunit xi, PDBTitle: the structure of a plant photosystem i supercomplex at 3.42 angstrom resolution 57 d1lmb3_ not modelled 9.7 16 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 58 c1nnjA_ not modelled 9.5 29 PDB header:hydrolase Chain: A: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure complex between the lactococcus lactis fpg and an2 abasic site containing dna 59 c2wusR_ not modelled 9.3 19 PDB header:structural protein Chain: R: PDB Molecule:putative uncharacterized protein; PDBTitle: bacterial actin mreb assembles in complex with cell shape2 protein rodz 60 d1lkxa_ not modelled 9.2 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Motor proteins 61 c2k1gA_ not modelled 9.1 15 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 62 d2ppxa1 not modelled 9.0 22 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 63 c2ppxA_ not modelled 9.0 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein atu1735; PDBTitle: crystal structure of a hth xre-family like protein from agrobacterium2 tumefaciens 64 d2b5ea2 not modelled 8.9 53 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:PDI-like 65 c2kscA_ not modelled 8.7 11 PDB header:unknown function Chain: A: PDB Molecule:cyanoglobin; PDBTitle: solution structure of synechococcus sp. pcc 7002 hemoglobin 66 d3c5wc1 not modelled 8.4 15 Fold:Metallo-dependent phosphatases Superfamily:Metallo-dependent phosphatases Family:Protein serine/threonine phosphatase 67 c1fuiB_ not modelled 8.3 18 PDB header:isomerase Chain: B: PDB Molecule:l-fucose isomerase; PDBTitle: l-fucose isomerase from escherichia coli 68 c2jf1A_ not modelled 7.7 32 PDB header:cell adhesion Chain: A: PDB Molecule:filamin-a; PDBTitle: crystal structure of the filamin a repeat 21 complexed with2 the integrin beta2 cytoplasmic tail peptide 69 d1l8qa2 not modelled 7.7 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Extended AAA-ATPase domain 70 d1u04a1 not modelled 7.6 55 Fold:SH3-like barrel Superfamily:PAZ domain Family:PAZ domain 71 d1z3eb1 not modelled 7.6 19 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 72 c1th1C_ not modelled 7.4 33 PDB header:cell adhesion/antitumor protein Chain: C: PDB Molecule:adenomatous polyposis coli protein; PDBTitle: beta-catenin in complex with a phosphorylated apc 20aa2 repeat fragment 73 d2hi3a1 not modelled 7.2 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 74 d2b5aa1 not modelled 7.2 18 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:SinR domain-like 75 d2ccaa2 not modelled 7.2 23 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 76 d2hddb_ not modelled 7.2 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:Homeodomain 77 d1xr4a2 not modelled 7.1 17 Fold:NagB/RpiA/CoA transferase-like Superfamily:NagB/RpiA/CoA transferase-like Family:CoA transferase alpha subunit-like 78 c2vt2A_ not modelled 6.8 14 PDB header:transcription Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex; PDBTitle: structure and functional properties of the bacillus2 subtilis transcriptional repressor rex 79 c1dlyA_ not modelled 6.7 19 PDB header:oxygen storage/transport Chain: A: PDB Molecule:hemoglobin; PDBTitle: x-ray crystal structure of hemoglobin from the green2 unicellular alga chlamydomonas eugametos 80 d1dlya_ not modelled 6.7 19 Fold:Globin-like Superfamily:Globin-like Family:Truncated hemoglobin 81 c3clcC_ not modelled 6.6 16 PDB header:transcription regulator/dna Chain: C: PDB Molecule:regulatory protein; PDBTitle: crystal structure of the restriction-modification controller protein2 c.esp1396i tetramer in complex with its natural 35 base-pair operator 82 d2b3na1 not modelled 6.6 26 Fold:Thioesterase/thiol ester dehydrase-isomerase Superfamily:Thioesterase/thiol ester dehydrase-isomerase Family:MaoC-like 83 c2ds4A_ not modelled 6.3 32 PDB header:protein binding Chain: A: PDB Molecule:tripartite motif protein 45; PDBTitle: solution structure of the filamin domain from human2 tripartite motif protein 45 84 c1htjF_ not modelled 6.2 19 PDB header:signaling protein Chain: F: PDB Molecule:kiaa0380; PDBTitle: structure of the rgs-like domain from pdz-rhogef 85 d1htjf_ not modelled 6.2 19 Fold:Regulator of G-protein signaling, RGS Superfamily:Regulator of G-protein signaling, RGS Family:Regulator of G-protein signaling, RGS 86 c1t73B_ not modelled 6.2 100 PDB header:hormone/growth factor receptor Chain: B: PDB Molecule:fxxff motif peptide; PDBTitle: crystal structure of the androgen receptor ligand binding2 domain in complex with a fxxff motif 87 d1rfya_ not modelled 6.1 29 Fold:Long alpha-hairpin Superfamily:Transcriptional repressor TraM Family:Transcriptional repressor TraM 88 d1cooa_ not modelled 6.1 24 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 89 d1ub2a1 not modelled 6.1 30 Fold:Heme-dependent peroxidases Superfamily:Heme-dependent peroxidases Family:Catalase-peroxidase KatG 90 c2jxuA_ not modelled 6.0 19 PDB header:unknown function Chain: A: PDB Molecule:terb; PDBTitle: nmr solution structure of kp-terb, a tellurite resistance2 protein from klebsiella pneumoniae 91 c3s93B_ not modelled 6.0 24 PDB header:transcription Chain: B: PDB Molecule:tudor domain-containing protein 5; PDBTitle: crystal structure of conserved motif in tdrd5 92 d1lb2b_ not modelled 5.9 24 Fold:SAM domain-like Superfamily:C-terminal domain of RNA polymerase alpha subunit Family:C-terminal domain of RNA polymerase alpha subunit 93 d2di8a1 not modelled 5.8 36 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Filamin repeat (rod domain) 94 d1yqea1 not modelled 5.8 13 Fold:Phosphorylase/hydrolase-like Superfamily:AF0625-like Family:AF0625-like 95 d1xnya1 not modelled 5.7 25 Fold:ClpP/crotonase Superfamily:ClpP/crotonase Family:Biotin dependent carboxylase carboxyltransferase domain 96 d2ozbb1 not modelled 5.6 13 Fold:Nop domain Superfamily:Nop domain Family:Nop domain 97 c1wao4_ not modelled 5.6 19 PDB header:hydrolase Chain: 4: PDB Molecule:serine/threonine protein phosphatase 5; PDBTitle: pp5 structure 98 d1k8rb_ not modelled 5.6 15 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD 99 d1biaa1 not modelled 5.6 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Biotin repressor-like

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0