Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	R	Y	L	N	T	K	N	I	I	A	A	G	V	L	L	S	C	M	S	S	I	A	W	G	A	I	I	P	D	R	T	R	I	I	M	N	E	S	D	K	G	E	A	L	K	L	T	N	Q	S	K	N	L	P	Y	L	A	Q	T
Secondary structure
SS confidence
Disorder		?	?	?	?	?																		?	?	?	?			?										?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		W	I	E	D	T	K	G	N	K	S	R	D	F	I	V	T	V	P	P	M	V	R	L	N	P	S	E	Q	I	Q	I	R	M	I	T	Q	E	K	I	A	Q	L	P	K	D	R	E	T	L	F	Y	F	N	V	R	E	I	P	P	K
Secondary structure
SS confidence
Disorder			?	?	?	?	?	?	?	?	?	?					?			?						?				?							?	?	?	?	?	?	?	?	?														?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		T	D	K	K	N	V	M	Q	V	T	M	Q	H	A	L	K	L	F	W	R	P	K	A	I	E	L	E	D	D	G	V	M	T	Y	E	K	V	E	I	I	R	R	N	D	G	S	I	R	F	N	N	K	M	P	Y	H	V	T	L	G
Secondary structure
SS confidence
Disorder		?	?	?	?	?																			?	?	?	?	?		?	?	?												?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	I	G	T	N	G	V	T	M	L	P	Q	T	Q	S	L	M	V	T	P	F	S	Y	A	N	T	Q	F	K	N	V	P	S	T	F	Q	V	G	Y	I	N	D	F	G	G	L	S	F	Y	E	I	N	C	P	V	V	N	N	I	C
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?	?	?								?						?	?	?																							?		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		N	I	S	V	A	N	R	D	Q
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1qpx chain A Region: 26 - 242 Aligned: 203 Modelled: 215 Confidence: 100.0% Identity: 35% PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers Phyre2 PDB 1qun chain A Region: 26 - 228 Aligned: 190 Modelled: 203 Confidence: 100.0% Identity: 28% PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli Phyre2 PDB 2co7 chain B Region: 21 - 231 Aligned: 194 Modelled: 211 Confidence: 100.0% Identity: 24% PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) Phyre2 PDB 1z9s chain A Region: 22 - 233 Aligned: 194 Modelled: 212 Confidence: 100.0% Identity: 25% PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex Phyre2 PDB 1l4i chain A Region: 26 - 228 Aligned: 183 Modelled: 199 Confidence: 100.0% Identity: 27% PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae Phyre2 PDB 3f6i chain B Region: 26 - 231 Aligned: 183 Modelled: 206 Confidence: 100.0% Identity: 26% PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee Phyre2 PDB 3q48 chain B Region: 28 - 230 Aligned: 179 Modelled: 203 Confidence: 100.0% Identity: 29% PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone Phyre2 PDB 2j2z chain A domain 1 Region: 26 - 148 Aligned: 123 Modelled: 123 Confidence: 100.0% Identity: 45% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1p5v chain A domain 1 Region: 21 - 144 Aligned: 111 Modelled: 124 Confidence: 100.0% Identity: 29% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2co7 chain B domain 1 Region: 21 - 144 Aligned: 117 Modelled: 124 Confidence: 100.0% Identity: 26% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 3bwu chain C domain 1 Region: 26 - 145 Aligned: 116 Modelled: 120 Confidence: 100.0% Identity: 32% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 1l4i chain A domain 1 Region: 26 - 144 Aligned: 112 Modelled: 119 Confidence: 100.0% Identity: 34% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: Pilus chaperone Phyre2 PDB 2j2z chain A domain 2 Region: 154 - 242 Aligned: 86 Modelled: 87 Confidence: 99.8% Identity: 26% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1p5v chain A domain 2 Region: 145 - 233 Aligned: 78 Modelled: 89 Confidence: 99.7% Identity: 22% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 3bwu chain C domain 2 Region: 151 - 228 Aligned: 74 Modelled: 74 Confidence: 99.7% Identity: 22% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 2co7 chain B domain 2 Region: 145 - 228 Aligned: 74 Modelled: 84 Confidence: 99.7% Identity: 22% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1l4i chain A domain 2 Region: 146 - 228 Aligned: 70 Modelled: 79 Confidence: 99.7% Identity: 19% Fold: C2 domain-like Superfamily: Periplasmic chaperone C-domain Family: Periplasmic chaperone C-domain Phyre2 PDB 1m1s chain A Region: 24 - 123 Aligned: 88 Modelled: 100 Confidence: 97.3% Identity: 9% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 1row chain A Region: 27 - 114 Aligned: 79 Modelled: 88 Confidence: 96.0% Identity: 10% Fold: Immunoglobulin-like beta-sandwich Superfamily: PapD-like Family: MSP-like Phyre2 PDB 2qsv chain A Region: 25 - 235 Aligned: 199 Modelled: 201 Confidence: 95.7% Identity: 13% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 Phyre2 1 c1qpxA_ 2 c1qunA_ 3 c2co7B_ 4 c1z9sA_ 5 c1l4iA_ 6 c3f6iB_ 7 c3q48B_ 8 d2j2za1 9 d1p5va1 10 d2co7b1 11 d3bwuc1 12 d1l4ia1 13 d2j2za2 14 d1p5va2 15 d3bwuc2 16 d2co7b2 17 d1l4ia2 18 d1m1sa_ 19 d1rowa_ 20 c2qsvA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1qpxA_ 100.0 35 PDB header:chaperone Chain: A: PDB Molecule:papd chaperone; PDBTitle: crystal structures of self-capping papd chaperone homodimers 2 c1qunA_ 100.0 28 PDB header:chaperone/structural protein Chain: A: PDB Molecule:papd-like chaperone fimc; PDBTitle: x-ray structure of the fimc-fimh chaperone adhesin complex2 from uropathogenic e.coli 3 c2co7B_ 100.0 24 PDB header:fibril protein Chain: B: PDB Molecule:putative fimbriae assembly chaperone; PDBTitle: salmonella enterica safa pilin in complex with the safb2 chaperone (type ii) 4 c1z9sA_ 100.0 25 PDB header:chaperone/immune system Chain: A: PDB Molecule:chaperone protein caf1m; PDBTitle: crystal structure of the native chaperone:subunit:subunit2 caf1m:caf1:caf1 complex 5 c1l4iA_ 100.0 27 PDB header:chaperone Chain: A: PDB Molecule:sfae protein; PDBTitle: crystal structure of the periplasmic chaperone sfae 6 c3f6iB_ 100.0 26 PDB header:chaperone Chain: B: PDB Molecule:chaperone protein faee; PDBTitle: structure of the semet labeled f4 fibrial chaperone faee 7 c3q48B_ 100.0 29 PDB header:chaperone Chain: B: PDB Molecule:chaperone cupb2; PDBTitle: crystal structure of pseudomonas aeruginosa cupb2 chaperone 8 d2j2za1 100.0 45 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 9 d1p5va1 100.0 29 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 10 d2co7b1 100.0 26 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 11 d3bwuc1 100.0 32 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 12 d1l4ia1 100.0 34 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:Pilus chaperone 13 d2j2za2 99.8 26 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 14 d1p5va2 99.7 22 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 15 d3bwuc2 99.7 22 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 16 d2co7b2 99.7 22 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 17 d1l4ia2 99.7 19 Fold:C2 domain-like Superfamily:Periplasmic chaperone C-domain Family:Periplasmic chaperone C-domain 18 d1m1sa_ 97.3 9 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 19 d1rowa_ 96.0 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 20 c2qsvA_ 95.7 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 21 d1grwa_ not modelled 95.4 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 22 c1z9oB_ not modelled 94.6 15 PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif 23 d1mspa_ not modelled 93.8 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 24 c3qisA_ not modelled 93.6 15 PDB header:hydrolase/protein binding Chain: A: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: recognition of the f&h motif by the lowe syndrome protein ocrl 25 c2e6jA_ not modelled 92.7 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydin protein; PDBTitle: solution structure of the c-terminal papd-like domain from2 human hydin protein 26 c3qbtH_ not modelled 90.8 14 PDB header:protein transport/hydrolase Chain: H: PDB Molecule:inositol polyphosphate 5-phosphatase ocrl-1; PDBTitle: crystal structure of ocrl1 540-678 in complex with rab8a:gppnhp 27 d1wica_ not modelled 89.9 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 28 c2ys4A_ not modelled 87.5 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 29 c3ac0B_ not modelled 80.2 14 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 30 d2vzsa2 not modelled 79.7 16 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 31 c2qvkA_ not modelled 73.2 8 PDB header:metal binding protein Chain: A: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: the second ca2+-binding domain of the na+-ca2+ exchanger is2 essential for regulation: crystal structures and3 mutational analysis 32 d1hfua2 not modelled 71.2 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 33 d1ejxb_ not modelled 66.3 14 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 34 d4ubpb_ not modelled 64.2 16 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 35 c2x41A_ not modelled 63.7 14 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 36 d1e42a1 not modelled 60.9 19 Fold:Immunoglobulin-like beta-sandwich Superfamily:Clathrin adaptor appendage domain Family:Alpha-adaptin ear subdomain-like 37 d1e9ya1 not modelled 57.0 23 Fold:beta-clip Superfamily:Urease, beta-subunit Family:Urease, beta-subunit 38 d2fwua1 not modelled 56.3 8 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 39 c1e9zA_ not modelled 47.5 23 PDB header:hydrolase Chain: A: PDB Molecule:urease subunit alpha; PDBTitle: crystal structure of helicobacter pylori urease 40 c3qgaD_ not modelled 45.5 17 PDB header:hydrolase Chain: D: PDB Molecule:fusion of urease beta and gamma subunits; PDBTitle: 3.0 a model of iron containing urease urea2b2 from helicobacter2 mustelae 41 d1aoza2 not modelled 44.1 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 42 c3eujB_ not modelled 39.5 33 PDB header:cell cycle Chain: B: PDB Molecule:chromosome partition protein mukf; PDBTitle: crystal structure of muke-mukf(residues 292-443)-mukb(head2 domain)-atpgammas complex, symmetric dimer 43 c1yycA_ not modelled 37.5 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative late embryogenesis abundant protein; PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1 44 c3jt0B_ not modelled 37.3 15 PDB header:structural protein Chain: B: PDB Molecule:lamin-b1; PDBTitle: crystal structure of the c-terminal fragment (426-558)2 lamin-b1 from homo sapiens, northeast structural genomics3 consortium target hr5546a 45 d1gyca2 not modelled 36.6 9 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 46 d1kyaa2 not modelled 35.4 8 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 47 c3butA_ not modelled 34.5 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein af_0446; PDBTitle: crystal structure of protein af_0446 from archaeoglobus fulgidus 48 d1xo8a_ not modelled 32.6 7 Fold:Immunoglobulin-like beta-sandwich Superfamily:LEA14-like Family:LEA14-like 49 c3o0lB_ not modelled 31.6 13 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a pfam duf1425 family member (shew_1734) from2 shewanella sp. pv-4 at 1.81 a resolution 50 d1v10a2 not modelled 31.3 5 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 51 c1e42A_ not modelled 31.1 17 PDB header:endocytosis Chain: A: PDB Molecule:ap-2 complex subunit beta; PDBTitle: beta2-adaptin appendage domain, from clathrin adaptor ap2 52 d1ufga_ not modelled 29.4 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 53 d1k3ra1 not modelled 28.6 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Hypothetical protein MTH1 (MT0001), insert domain 54 c2lllA_ not modelled 27.7 13 PDB header:structural protein Chain: A: PDB Molecule:lamin-b2; PDBTitle: solution nmr structure of c-terminal globular domain of human lamin-2 b2, northeast structural genomics consortium target hr8546a 55 d1v8ha1 not modelled 24.4 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:SoxZ-like 56 d2q9oa2 not modelled 23.8 10 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 57 d1ifra_ not modelled 22.6 15 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 58 c1wkwB_ not modelled 17.4 56 PDB header:translation/protein binding Chain: B: PDB Molecule:eukaryotic translation initiation factor 4e PDBTitle: crystal structure of the ternary complex of eif4e-m7gpppa-2 4ebp1 peptide 59 d2v33a1 not modelled 16.9 30 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Class II viral fusion proteins C-terminal domain 60 c3rb7E_ not modelled 15.8 7 PDB header:metal binding protein Chain: E: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of cbd12 from calx1.2 61 c3h6aB_ not modelled 15.4 7 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-4; PDBTitle: structure of the calx-beta domain of integrin beta42 crystallized in the presence of calcium 62 d2dpka1 not modelled 15.1 10 Fold:Immunoglobulin-like beta-sandwich Superfamily:CalX-like Family:CalX-beta domain 63 c2frgP_ not modelled 14.3 10 PDB header:immune system Chain: P: PDB Molecule:trem-like transcript-1; PDBTitle: structure of the immunoglobulin-like domain of human tlt-1 64 c3ginB_ not modelled 13.9 15 PDB header:metal binding protein Chain: B: PDB Molecule:sodium/calcium exchanger 1; PDBTitle: crystal structure of e454k-cbd1 65 d1ivta_ not modelled 13.0 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Lamin A/C globular tail domain Family:Lamin A/C globular tail domain 66 d1jz8a2 not modelled 11.7 11 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 67 d2f7fa1 not modelled 11.2 38 Fold:TIM beta/alpha-barrel Superfamily:Nicotinate/Quinolinate PRTase C-terminal domain-like Family:NadC C-terminal domain-like 68 c2qziA_ not modelled 10.8 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of a conserved protein of unknown function from2 streptococcus thermophilus lmg 18311. 69 c2phgB_ not modelled 10.5 50 PDB header:transcription Chain: B: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to tfiib 70 c2pheC_ not modelled 10.1 50 PDB header:transcription Chain: C: PDB Molecule:alpha trans-inducing protein; PDBTitle: model for vp16 binding to pc4 71 d1eg3a3 not modelled 8.7 50 Fold:WW domain-like Superfamily:WW domain Family:WW domain 72 c3hzpA_ not modelled 8.0 43 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntf2-like protein of unknown function; PDBTitle: crystal structure of ntf2-like protein of unknown function mn2a_05052 from prochlorococcus marinus (yp_291699.1) from prochlorococcus sp.3 natl2a at 1.40 a resolution 73 c3dqgC_ not modelled 7.8 12 PDB header:chaperone Chain: C: PDB Molecule:heat shock 70 kda protein f; PDBTitle: peptide-binding domain of heat shock 70 kda protein f, mitochondrial2 precursor, from caenorhabditis elegans. 74 c3ohnA_ not modelled 7.8 20 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane usher protein fimd; PDBTitle: crystal structure of the fimd translocation domain 75 c1skoA_ not modelled 7.7 21 PDB header:signaling protein Chain: A: PDB Molecule:mitogen-activated protein kinase kinase 1 PDBTitle: mp1-p14 complex 76 c2oxgE_ not modelled 7.6 16 PDB header:transport protein Chain: E: PDB Molecule:soxz protein; PDBTitle: the soxyz complex of paracoccus pantotrophus 77 d3cpta1 not modelled 7.6 21 Fold:Profilin-like Superfamily:Roadblock/LC7 domain Family:Roadblock/LC7 domain 78 d1qgpa_ not modelled 7.0 27 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 79 d1w8oa1 not modelled 7.0 12 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 80 c2v0xB_ not modelled 6.8 40 PDB header:cell cycle Chain: B: PDB Molecule:lamina-associated polypeptide 2 isoforms PDBTitle: the dimerization domain of lap2alpha 81 d1u00a2 not modelled 6.8 25 Fold:Heat shock protein 70kD (HSP70), peptide-binding domain Superfamily:Heat shock protein 70kD (HSP70), peptide-binding domain Family:Heat shock protein 70kD (HSP70), peptide-binding domain 82 c2ai4A_ not modelled 6.7 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein so1698; PDBTitle: structure of protein of unknown function so1698 from shewanella2 oneidensis 83 d1r7aa1 not modelled 6.2 20 Fold:Glycosyl hydrolase domain Superfamily:Glycosyl hydrolase domain Family:alpha-Amylases, C-terminal beta-sheet domain 84 d2huha1 not modelled 6.2 16 Fold:C2 domain-like Superfamily:Smr-associated domain-like Family:Smr-associated domain 85 c1z8yF_ not modelled 6.2 25 PDB header:virus Chain: F: PDB Molecule:spike glycoprotein e1; PDBTitle: mapping the e2 glycoprotein of alphaviruses 86 d1t4za_ not modelled 5.9 22 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:KaiB-like 87 c3e9tD_ not modelled 5.7 10 PDB header:membrane protein Chain: D: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of apo-form calx cbd1 domain 88 c1zpuE_ not modelled 5.6 8 PDB header:oxidoreductase Chain: E: PDB Molecule:iron transport multicopper oxidase fet3; PDBTitle: crystal structure of fet3p, a multicopper oxidase that functions in2 iron import 89 c3nuhB_ not modelled 5.6 20 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase subunit b; PDBTitle: a domain insertion in e. coli gyrb adopts a novel fold that plays a2 critical role in gyrase function 90 c3of6D_ not modelled 5.6 21 PDB header:immune system Chain: D: PDB Molecule:pre t-cell antigen receptor alpha; PDBTitle: human pre-t cell receptor crystal structure 91 c1l9mB_ not modelled 5.5 14 PDB header:transferase Chain: B: PDB Molecule:protein-glutamine glutamyltransferase e3; PDBTitle: three-dimensional structure of the human transglutaminase 32 enzyme: binding of calcium ions change structure for3 activation 92 d1nyna_ not modelled 5.5 23 Fold:FYSH domain Superfamily:FYSH domain Family:Hypothetical protein Yhr087W 93 c2vzvB_ not modelled 5.3 13 PDB header:hydrolase Chain: B: PDB Molecule:exo-beta-d-glucosaminidase; PDBTitle: substrate complex of amycolatopsis orientalis exo-2 chitosanase csxa e541a with chitosan 94 d1hmja_ not modelled 5.2 16 Fold:RPB5-like RNA polymerase subunit Superfamily:RPB5-like RNA polymerase subunit Family:RPB5 95 d1cuoa_ not modelled 5.1 7 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 96 d1pkoa_ not modelled 5.1 17 Fold:Immunoglobulin-like beta-sandwich Superfamily:Immunoglobulin Family:V set domains (antibody variable domain-like) 97 c3ppsD_ not modelled 5.1 11 PDB header:oxidoreductase Chain: D: PDB Molecule:laccase; PDBTitle: crystal structure of an ascomycete fungal laccase from thielavia2 arenaria 98 c3e9uA_ not modelled 5.1 8 PDB header:membrane protein Chain: A: PDB Molecule:na/ca exchange protein; PDBTitle: crystal structure of calx cbd2 domain 99 c2y38A_ not modelled 5.0 10 PDB header:structural protein Chain: A: PDB Molecule:laminin subunit alpha-5; PDBTitle: laminin alpha5 chain n-terminal fragment

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0