Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP32171
DateThu Jan 5 11:49:51 GMT 2012
Unique Job ID52e1353e0cd08a07

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2cgkB_
Top template information
PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.
Confidence and coverage
Confidence:100.0% Coverage: 98%
478 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAI
Secondary structure 
SS confidence 
Disorder  ???
?????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  RLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRTNGLMAQAQQQLGK
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  RDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLMPDYFSYRLTGKMNWEYTNAT
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  TTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTAS
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  AVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  WLLQRVLQEQQINDLPALISATQALPACRFIINPNDDRFINPETMCSEIQAACRETAQPI
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  PESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNTLLNQLCADACGIR
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  VIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHS
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........
Sequence  TRQTKELCA
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2cgk chain B

3D model

Region: 2 - 479
Aligned: 478
Modelled: 478
Confidence: 100.0%
Identity: 98%
PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.

Phyre2

PDB 3gbt chain A

3D model

Region: 2 - 489
Aligned: 475
Modelled: 488
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus

Phyre2

PDB 3flc chain X

3D model

Region: 2 - 486
Aligned: 475
Modelled: 484
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol

Phyre2

PDB 2zf5 chain O

3D model

Region: 1 - 488
Aligned: 473
Modelled: 488
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon

Phyre2

PDB 2d4w chain A

3D model

Region: 4 - 486
Aligned: 472
Modelled: 483
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060

Phyre2

PDB 3hz6 chain A

3D model

Region: 2 - 489
Aligned: 477
Modelled: 488
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum

Phyre2

PDB 3ifr chain B

3D model

Region: 4 - 486
Aligned: 462
Modelled: 477
Confidence: 100.0%
Identity: 16%
PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum

Phyre2

PDB 3jvp chain A

3D model

Region: 4 - 488
Aligned: 479
Modelled: 482
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans

Phyre2

PDB 3g25 chain B

3D model

Region: 3 - 488
Aligned: 476
Modelled: 486
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.

Phyre2

PDB 2w40 chain C

3D model

Region: 2 - 489
Aligned: 480
Modelled: 488
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol

Phyre2

PDB 2dpn chain B

3D model

Region: 5 - 486
Aligned: 471
Modelled: 482
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8

Phyre2

PDB 2nlx chain A

3D model

Region: 6 - 486
Aligned: 459
Modelled: 481
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase

Phyre2

PDB 1glb chain G

3D model

Region: 4 - 488
Aligned: 469
Modelled: 485
Confidence: 100.0%
Identity: 17%
PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase

Phyre2

PDB 3ezw chain D

3D model

Region: 2 - 488
Aligned: 463
Modelled: 483
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices

Phyre2

PDB 3gg4 chain B

3D model

Region: 1 - 486
Aligned: 473
Modelled: 475
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis

Phyre2

PDB 1xup chain O

3D model

Region: 5 - 485
Aligned: 471
Modelled: 474
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol

Phyre2

PDB 3i8b chain A

3D model

Region: 1 - 478
Aligned: 457
Modelled: 475
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis

Phyre2

PDB 3h6e chain B

3D model

Region: 1 - 488
Aligned: 450
Modelled: 470
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans

Phyre2

PDB 2p3r chain A domain 1

3D model

Region: 2 - 244
Aligned: 239
Modelled: 243
Confidence: 100.0%
Identity: 18%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Glycerol kinase

Phyre2

PDB 1r59 chain O domain 1

3D model

Region: 4 - 247
Aligned: 234
Modelled: 244
Confidence: 100.0%
Identity: 18%
Fold: Ribonuclease H-like motif
Superfamily: Actin-like ATPase domain
Family: Glycerol kinase

Phyre2
1
c2cgkB_
2
c3gbtA_
3
c3flcX_
4
c2zf5O_
5
c2d4wA_
6
c3hz6A_
7
c3ifrB_
8
c3jvpA_
9
c3g25B_
10
c2w40C_
11
c2dpnB_
12
c2nlxA_
13
c1glbG_
14
c3ezwD_
15
c3gg4B_
16
c1xupO_
17
c3i8bA_
18
c3h6eB_
19
d2p3ra1
20
d1r59o1
21
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2cgkB_
100.0 98 PDB header:transferase
Chain: B: PDB Molecule:l-rhamnulose kinase;
PDBTitle: crystal structure of l-rhamnulose kinase from escherichia2 coli in an open uncomplexed conformation.
2c3gbtA_
100.0 15 PDB header:transferase
Chain: A: PDB Molecule:gluconate kinase;
PDBTitle: crystal structure of gluconate kinase from lactobacillus acidophilus
3c3flcX_
100.0 16 PDB header:transferase
Chain: X: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the his-tagged h232r mutant of glycerol kinase2 from enterococcus casseliflavus with glycerol
4c2zf5O_
100.0 18 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of highly thermostable glycerol kinase from a2 hyperthermophilic archaeon
5c2d4wA_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of glycerol kinase from cellulomonas sp.2 nt3060
6c3hz6A_
100.0 18 PDB header:transferase
Chain: A: PDB Molecule:xylulokinase;
PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
7c3ifrB_
100.0 16 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of xylulose kinase from rhodospirillum rubrum
8c3jvpA_
100.0 15 PDB header:transferase
Chain: A: PDB Molecule:ribulokinase;
PDBTitle: crystal structure of ribulokinase from bacillus halodurans
9c3g25B_
100.0 17 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: 1.9 angstrom crystal structure of glycerol kinase (glpk) from2 staphylococcus aureus in complex with glycerol.
10c2w40C_
100.0 15 PDB header:transferase
Chain: C: PDB Molecule:glycerol kinase, putative;
PDBTitle: crystal structure of plasmodium falciparum glycerol kinase2 with bound glycerol
11c2dpnB_
100.0 21 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of the glycerol kinase from thermus2 thermophilus hb8
12c2nlxA_
100.0 17 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: crystal structure of the apo e. coli xylulose kinase
13c1glbG_
100.0 17 PDB header:phosphotransferase
Chain: G: PDB Molecule:glycerol kinase;
PDBTitle: structure of the regulatory complex of escherichia coli iiiglc with2 glycerol kinase
14c3ezwD_
100.0 17 PDB header:transferase
Chain: D: PDB Molecule:glycerol kinase;
PDBTitle: crystal structure of a hyperactive escherichia coli glycerol kinase2 mutant gly230 --> asp obtained using microfluidic crystallization3 devices
15c3gg4B_
100.0 17 PDB header:transferase
Chain: B: PDB Molecule:glycerol kinase;
PDBTitle: the crystal structure of glycerol kinase from yersinia2 pseudotuberculosis
16c1xupO_
100.0 17 PDB header:transferase
Chain: O: PDB Molecule:glycerol kinase;
PDBTitle: enterococcus casseliflavus glycerol kinase complexed with glycerol
17c3i8bA_
100.0 18 PDB header:transferase
Chain: A: PDB Molecule:xylulose kinase;
PDBTitle: the crystal structure of xylulose kinase from2 bifidobacterium adolescentis
18c3h6eB_
100.0 17 PDB header:transferase
Chain: B: PDB Molecule:carbohydrate kinase, fggy;
PDBTitle: the crystal structure of a carbohydrate kinase from novosphingobium2 aromaticivorans
19d2p3ra1
100.0 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
20d1r59o1
100.0 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
21d2p3ra2
not modelled 100.0 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
22d1r59o2
not modelled 100.0 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glycerol kinase
23d1huxa_
not modelled 99.4 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
24c3h1qB_
not modelled 99.2 18 PDB header:structural protein
Chain: B: PDB Molecule:ethanolamine utilization protein eutj;
PDBTitle: crystal structure of ethanolamine utilization protein eutj from2 carboxydothermus hydrogenoformans
25c2e2pA_
not modelled 99.2 15 PDB header:transferase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: crystal structure of sulfolobus tokodaii hexokinase in2 complex with adp
26d1zc6a1
not modelled 98.8 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
27c3enoB_
not modelled 98.7 14 PDB header:hydrolase/unknown function
Chain: B: PDB Molecule:putative o-sialoglycoprotein endopeptidase;
PDBTitle: crystal structure of pyrococcus furiosus pcc1 in complex2 with thermoplasma acidophilum kae1
28c3eo3B_
not modelled 98.6 20 PDB header:isomerase, transferase
Chain: B: PDB Molecule:bifunctional udp-n-acetylglucosamine 2-epimerase/n-
PDBTitle: crystal structure of the n-acetylmannosamine kinase domain of human2 gne protein
29c2ivoC_
not modelled 98.6 18 PDB header:hydrolase
Chain: C: PDB Molecule:up1;
PDBTitle: structure of up1 protein
30d2ewsa1
not modelled 98.6 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
31c1zc6A_
not modelled 98.4 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:probable n-acetylglucosamine kinase;
PDBTitle: crystal structure of putative n-acetylglucosamine kinase from2 chromobacterium violaceum. northeast structural genomics target3 cvr23.
32d1z6ra2
not modelled 98.3 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
33c2ap1A_
not modelled 98.2 12 PDB header:transferase
Chain: A: PDB Molecule:putative regulator protein;
PDBTitle: crystal structure of the putative regulatory protein
34d1z05a3
not modelled 98.2 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
35c1z6rC_
not modelled 98.1 17 PDB header:transcription
Chain: C: PDB Molecule:mlc protein;
PDBTitle: crystal structure of mlc from escherichia coli
36c2qm1D_
not modelled 98.1 18 PDB header:transferase
Chain: D: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase from enterococcus faecalis
37d2hoea3
not modelled 98.1 6 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
38c2ch5D_
not modelled 98.0 16 PDB header:transferase
Chain: D: PDB Molecule:nagk protein;
PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine
39c3en9B_
not modelled 97.9 13 PDB header:hydrolase
Chain: B: PDB Molecule:o-sialoglycoprotein endopeptidase/protein kinase;
PDBTitle: structure of the methanococcus jannaschii kae1-bud32 fusion2 protein
40c1dkgD_
not modelled 97.9 19 PDB header:complex (hsp24/hsp70)
Chain: D: PDB Molecule:molecular chaperone dnak;
PDBTitle: crystal structure of the nucleotide exchange factor grpe2 bound to the atpase domain of the molecular chaperone dnak
41c2aa4B_
not modelled 97.9 14 PDB header:transferase
Chain: B: PDB Molecule:putative n-acetylmannosamine kinase;
PDBTitle: crystal structure of escherichia coli putative n-2 acetylmannosamine kinase, new york structural genomics3 consortium
42d2ap1a2
not modelled 97.9 10 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
43d2ch5a2
not modelled 97.9 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:BadF/BadG/BcrA/BcrD-like
44d2aa4a1
not modelled 97.9 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
45d1woqa1
not modelled 97.8 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
46c1z05A_
not modelled 97.8 21 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, rok family;
PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein.
47d1dkgd2
not modelled 97.7 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
48c3r8eA_
not modelled 97.7 17 PDB header:transferase
Chain: A: PDB Molecule:hypothetical sugar kinase;
PDBTitle: crystal structure of a hypothetical sugar kinase (chu_1875) from2 cytophaga hutchinsonii atcc 33406 at 1.65 a resolution
49c2v7zA_
not modelled 97.7 19 PDB header:chaperone
Chain: A: PDB Molecule:heat shock cognate 71 kda protein;
PDBTitle: crystal structure of the 70-kda heat shock cognate protein2 from rattus norvegicus in post-atp hydrolysis state
50c3htvA_
not modelled 97.6 18 PDB header:transferase
Chain: A: PDB Molecule:d-allose kinase;
PDBTitle: crystal structure of d-allose kinase (np_418508.1) from escherichia2 coli k12 at 1.95 a resolution
51c3d2fC_
not modelled 97.6 16 PDB header:chaperone
Chain: C: PDB Molecule:heat shock protein homolog sse1;
PDBTitle: crystal structure of a complex of sse1p and hsp70
52d2gupa1
not modelled 97.6 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
53d1q18a1
not modelled 97.6 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
54c2v7yA_
not modelled 97.5 16 PDB header:chaperone
Chain: A: PDB Molecule:chaperone protein dnak;
PDBTitle: crystal structure of the molecular chaperone dnak from2 geobacillus kaustophilus hta426 in post-atp hydrolysis3 state
55d1sz2a1
not modelled 97.5 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Glucokinase
56c3vgkB_
not modelled 97.5 17 PDB header:transferase
Chain: B: PDB Molecule:glucokinase;
PDBTitle: crystal structure of a rok family glucokinase from streptomyces2 griseus
57c1hpmA_
not modelled 97.5 20 PDB header:hydrolase (acting on acid anhydrides)
Chain: A: PDB Molecule:44k atpase fragment (n-terminal) of 7o kd heat-
PDBTitle: how potassium affects the activity of the molecular2 chaperone hsc70. ii. potassium binds specifically in the3 atpase active site
58c1xc3A_
not modelled 97.4 12 PDB header:transferase
Chain: A: PDB Molecule:putative fructokinase;
PDBTitle: structure of a putative fructokinase from bacillus subtilis
59c3mcpA_
not modelled 97.4 15 PDB header:transferase
Chain: A: PDB Molecule:glucokinase;
PDBTitle: crystal structure of glucokinase (bdi_1628) from parabacteroides2 distasonis atcc 8503 at 3.00 a resolution
60c2hoeA_
not modelled 97.3 5 PDB header:transferase
Chain: A: PDB Molecule:n-acetylglucosamine kinase;
PDBTitle: crystal structure of n-acetylglucosamine kinase (tm1224) from2 thermotoga maritima at 2.46 a resolution
61d2e8aa2
not modelled 97.3 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
62c3cqyA_
not modelled 97.3 21 PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of a functionally unknown protein (so_1313) from2 shewanella oneidensis mr-1
63d1bupa2
not modelled 97.3 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
64d1jcea2
not modelled 97.3 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
65c2gupA_
not modelled 97.2 15 PDB header:transferase
Chain: A: PDB Molecule:rok family protein;
PDBTitle: structural genomics, the crystal structure of a rok family protein2 from streptococcus pneumoniae tigr4 in complex with sucrose
66c3iucC_
not modelled 97.2 23 PDB header:chaperone
Chain: C: PDB Molecule:heat shock 70kda protein 5 (glucose-regulated
PDBTitle: crystal structure of the human 70kda heat shock protein 52 (bip/grp78) atpase domain in complex with adp
67d1xc3a1
not modelled 97.2 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ROK
68c2q2rA_
not modelled 97.1 11 PDB header:transferase
Chain: A: PDB Molecule:glucokinase 1, putative;
PDBTitle: trypanosoma cruzi glucokinase in complex with beta-d-glucose and adp
69c1woqB_
not modelled 97.1 6 PDB header:transferase
Chain: B: PDB Molecule:inorganic polyphosphate/atp-glucomannokinase;
PDBTitle: crystal structure of inorganic polyphosphate/atp-glucomannokinase from2 arthrobacter sp. strain km at 1.8 a resolution
70d1e4ft1
not modelled 97.0 11 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
71c1jcgA_
not modelled 97.0 21 PDB header:structural protein
Chain: A: PDB Molecule:rod shape-determining protein mreb;
PDBTitle: mreb from thermotoga maritima, amppnp
72c1e4gT_
not modelled 96.9 17 PDB header:bacterial cell division
Chain: T: PDB Molecule:cell division protein ftsa;
PDBTitle: ftsa (atp-bound form) from thermotoga maritima
73c2khoA_
not modelled 96.9 20 PDB header:chaperone
Chain: A: PDB Molecule:heat shock protein 70;
PDBTitle: nmr-rdc / xray structure of e. coli hsp70 (dnak) chaperone2 (1-605) complexed with adp and substrate
74d1e4ft2
not modelled 96.9 20 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
75c2ychA_
not modelled 96.9 11 PDB header:cell cycle
Chain: A: PDB Molecule:competence protein pilm;
PDBTitle: pilm-piln type iv pilus biogenesis complex
76c1sazA_
not modelled 96.7 12 PDB header:transferase
Chain: A: PDB Molecule:probable butyrate kinase 2;
PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima
77c3qbwA_
not modelled 96.6 18 PDB header:transferase
Chain: A: PDB Molecule:anhydro-n-acetylmuramic acid kinase;
PDBTitle: crystal structure of pseudomonas aeruginosa 1,6-anhydro-n-2 actetylmuramic acid kinase (anmk) bound to adenosine diphosphate
78c3lm2B_
not modelled 96.6 13 PDB header:transferase
Chain: B: PDB Molecule:putative kinase;
PDBTitle: crystal structure of putative kinase. (17743352) from agrobacterium2 tumefaciens str. c58 (dupont) at 1.70 a resolution
79c2d0oA_
not modelled 96.6 24 PDB header:chaperone
Chain: A: PDB Molecule:diol dehydratase-reactivating factor large
PDBTitle: strcuture of diol dehydratase-reactivating factor complexed2 with adp and mg2+
80d2e1za1
not modelled 96.2 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
81c1zbsA_
not modelled 96.1 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pg1100;
PDBTitle: crystal structure of the putative n-acetylglucosamine kinase (pg1100)2 from porphyromonas gingivalis, northeast structural genomics target3 pgr18
82d1g99a1
not modelled 96.0 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
83d2d0oa2
not modelled 95.9 22 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:ATPase domain of dehydratase reactivase alpha subunit
84d1bg3a3
not modelled 95.8 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
85d1bdga1
not modelled 95.7 14 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
86c3tsuA_
not modelled 95.4 25 PDB header:transferase
Chain: A: PDB Molecule:transcriptional regulatory protein;
PDBTitle: crystal structure of e. coli hypf with amp-pnp and carbamoyl phosphate
87d1ig8a1
not modelled 95.2 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
88c2h3gX_
not modelled 95.2 16 PDB header:biosynthetic protein
Chain: X: PDB Molecule:biosynthetic protein;
PDBTitle: structure of the type iii pantothenate kinase (coax) from bacillus2 anthracis
89c1bdgA_
not modelled 95.1 14 PDB header:hexokinase
Chain: A: PDB Molecule:hexokinase;
PDBTitle: hexokinase from schistosoma mansoni complexed with glucose
90c3t69A_
not modelled 95.1 24 PDB header:transferase
Chain: A: PDB Molecule:putative 2-dehydro-3-deoxygalactonokinase;
PDBTitle: crystal structure of a putative 2-dehydro-3-deoxygalactonokinase2 protein from sinorhizobium meliloti
91d1v4sa1
not modelled 95.0 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
92c1ig8A_
not modelled 95.0 14 PDB header:transferase
Chain: A: PDB Molecule:hexokinase pii;
PDBTitle: crystal structure of yeast hexokinase pii with the correct2 amino acid sequence
93d1saza1
not modelled 94.9 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Acetokinase-like
94c1okjB_
not modelled 94.6 14 PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protease yeaz;
PDBTitle: crystal structure of the essential e. coli yeaz2 protein by mad method using the gadolinium complex3 "dotma"
95c1tuuA_
not modelled 94.6 15 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase crystallized with atpgs
96c1t6dB_
not modelled 94.4 10 PDB header:hydrolase
Chain: B: PDB Molecule:exopolyphosphatase;
PDBTitle: miras phasing of the aquifex aeolicus ppx/gppa phosphatase: crystal2 structure of the type ii variant
97d3bexa1
not modelled 94.4 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:CoaX-like
98d1bg3a1
not modelled 94.3 19 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
99c1x3nA_
not modelled 94.2 19 PDB header:transferase
Chain: A: PDB Molecule:propionate kinase;
PDBTitle: crystal structure of amppnp bound propionate kinase (tdcd) from2 salmonella typhimurium
100c1zxoB_
not modelled 94.2 9 PDB header:unknown function
Chain: B: PDB Molecule:conserved hypothetical protein q8a1p1;
PDBTitle: x-ray crystal structure of protein q8a1p1 from bacteroides2 thetaiotaomicron. northeast structural genomics consortium3 target btr25.
101d1czan3
not modelled 94.1 17 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
102c3p4iA_
not modelled 94.1 16 PDB header:transferase
Chain: A: PDB Molecule:acetate kinase;
PDBTitle: crystal structure of acetate kinase from mycobacterium avium
103c1v4sA_
not modelled 94.0 18 PDB header:transferase
Chain: A: PDB Molecule:glucokinase isoform 2;
PDBTitle: crystal structure of human glucokinase
104d3bzka5
not modelled 94.0 19 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Tex RuvX-like domain-like
105d1t6ca1
not modelled 93.9 12 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Ppx/GppA phosphatase
106c2iirJ_
not modelled 93.8 15 PDB header:transferase
Chain: J: PDB Molecule:acetate kinase;
PDBTitle: acetate kinase from a hypothermophile thermotoga maritima
107c1mwmA_
not modelled 93.6 7 PDB header:structural protein
Chain: A: PDB Molecule:parm;
PDBTitle: parm from plasmid r1 adp form
108d2i7pa1
not modelled 93.2 15 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
109c3hm8D_
not modelled 93.0 20 PDB header:transferase
Chain: D: PDB Molecule:hexokinase-3;
PDBTitle: crystal structure of the c-terminal hexokinase domain of human hk3
110d1czan1
not modelled 93.0 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Hexokinase
111c3hi0B_
not modelled 92.9 13 PDB header:hydrolase
Chain: B: PDB Molecule:putative exopolyphosphatase;
PDBTitle: crystal structure of putative exopolyphosphatase (17739545) from2 agrobacterium tumefaciens str. c58 (dupont) at 2.30 a resolution
112d2e8aa1
not modelled 92.8 18 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
113d2i7na2
not modelled 92.7 13 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Fumble-like
114d2a6aa1
not modelled 92.6 16 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:YeaZ-like
115c3mdqA_
not modelled 92.1 8 PDB header:hydrolase
Chain: A: PDB Molecule:exopolyphosphatase;
PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution
116c3cerD_
not modelled 92.0 12 PDB header:structural genomics, unknown function
Chain: D: PDB Molecule:possible exopolyphosphatase-like protein;
PDBTitle: crystal structure of the exopolyphosphatase-like protein2 q8g5j2. northeast structural genomics consortium target3 blr13
117c1qhaA_
not modelled 91.8 21 PDB header:transferase
Chain: A: PDB Molecule:protein (hexokinase);
PDBTitle: human hexokinase type i complexed with atp analogue amp-pnp
118d1bupa1
not modelled 91.5 26 Fold:Ribonuclease H-like motif
Superfamily:Actin-like ATPase domain
Family:Actin/HSP70
119c3djcA_
not modelled 91.5 16 PDB header:transferase
Chain: A: PDB Molecule:type iii pantothenate kinase;
PDBTitle: crystal structure of pantothenate kinase from legionella pneumophila
120c2a6aB_
not modelled 91.3 16 PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical protein tm0874;
PDBTitle: crystal structure of glycoprotein endopeptidase (tm0874) from2 thermotoga maritima at 2.50 a resolution

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0