Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A6E9
DateThu Jan 5 11:02:58 GMT 2012
Unique Job ID52b8911292887e72

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1byia_
Top template information
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
Confidence and coverage
Confidence:100.0% Coverage: 95%
219 residues ( 95% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGSKETPEGLRNKDALVLQ
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Disorder  ????








































????










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   .........70.........80.........90.........100.........110.........120
Sequence  SVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANLTEKVDHVVVEGTGGWRSL
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????






























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   .........130.........140.........150.........160.........170.........180
Sequence  MNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINPGLAH
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Disorder 
























































?

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   .........190.........200.........210.........220.........230.
Sequence  YAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLAMLRSVLAVDRVTV
Secondary structure 

















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Disorder 











































???????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1byi chain A

3D model

Region: 2 - 220
Aligned: 219
Modelled: 219
Confidence: 100.0%
Identity: 52%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 3of5 chain A

3D model

Region: 3 - 215
Aligned: 211
Modelled: 213
Confidence: 100.0%
Identity: 26%
PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of a dethiobiotin synthetase from francisella2 tularensis subsp. tularensis schu s4

Phyre2

PDB 2qmo chain A

3D model

Region: 2 - 211
Aligned: 210
Modelled: 210
Confidence: 100.0%
Identity: 19%
PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of dethiobiotin synthetase (biod) from helicobacter2 pylori

Phyre2

PDB 3fmf chain A

3D model

Region: 2 - 213
Aligned: 206
Modelled: 212
Confidence: 100.0%
Identity: 25%
PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate

Phyre2

PDB 2afh chain E domain 1

3D model

Region: 2 - 213
Aligned: 205
Modelled: 212
Confidence: 99.9%
Identity: 18%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 1cp2 chain A

3D model

Region: 2 - 211
Aligned: 203
Modelled: 210
Confidence: 99.9%
Identity: 19%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 1g3q chain A

3D model

Region: 1 - 213
Aligned: 204
Modelled: 211
Confidence: 99.9%
Identity: 18%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 1hyq chain A

3D model

Region: 2 - 213
Aligned: 203
Modelled: 212
Confidence: 99.9%
Identity: 20%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 1hyq chain A

3D model

Region: 2 - 213
Aligned: 203
Modelled: 212
Confidence: 99.9%
Identity: 20%
PDB header:cell cycle
Chain: A: PDB Molecule:cell division inhibitor (mind-1);
PDBTitle: mind bacterial cell division regulator from a. fulgidus

Phyre2

PDB 1ion chain A

3D model

Region: 1 - 213
Aligned: 204
Modelled: 205
Confidence: 99.9%
Identity: 16%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2

PDB 2ph1 chain A

3D model

Region: 3 - 210
Aligned: 203
Modelled: 205
Confidence: 99.9%
Identity: 16%
PDB header:ligand binding protein
Chain: A: PDB Molecule:nucleotide-binding protein;
PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165

Phyre2

PDB 3kjg chain B

3D model

Region: 2 - 212
Aligned: 198
Modelled: 210
Confidence: 99.9%
Identity: 17%
PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory
PDBTitle: adp-bound state of cooc1

Phyre2

PDB 3ea0 chain B

3D model

Region: 2 - 217
Aligned: 205
Modelled: 216
Confidence: 99.9%
Identity: 14%
PDB header:hydrolase
Chain: B: PDB Molecule:atpase, para family;
PDBTitle: crystal structure of para family atpase from chlorobium tepidum tls

Phyre2

PDB 2oze chain A

3D model

Region: 3 - 210
Aligned: 201
Modelled: 201
Confidence: 99.9%
Identity: 13%
PDB header:dna binding protein
Chain: A: PDB Molecule:orf delta';
PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes

Phyre2

PDB 3end chain A

3D model

Region: 3 - 211
Aligned: 197
Modelled: 209
Confidence: 99.9%
Identity: 20%
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase
PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein

Phyre2

PDB 2bek chain B

3D model

Region: 2 - 213
Aligned: 205
Modelled: 212
Confidence: 99.9%
Identity: 17%
PDB header:chromosome segregation
Chain: B: PDB Molecule:segregation protein;
PDBTitle: structure of the bacterial chromosome segregation protein2 soj

Phyre2

PDB 3fkq chain A

3D model

Region: 1 - 213
Aligned: 199
Modelled: 213
Confidence: 99.9%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntrc-like two-domain protein;
PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution

Phyre2

PDB 3ez6 chain B

3D model

Region: 2 - 210
Aligned: 209
Modelled: 209
Confidence: 99.9%
Identity: 14%
PDB header:dna binding protein
Chain: B: PDB Molecule:plasmid partition protein a;
PDBTitle: structure of para-adp complex:tetragonal form

Phyre2

PDB 3q9l chain B

3D model

Region: 3 - 213
Aligned: 204
Modelled: 204
Confidence: 99.9%
Identity: 12%
PDB header:cell cycle, hydrolase
Chain: B: PDB Molecule:septum site-determining protein mind;
PDBTitle: the structure of the dimeric e.coli mind-atp complex

Phyre2

PDB 3ug7 chain D

3D model

Region: 2 - 205
Aligned: 203
Modelled: 204
Confidence: 99.9%
Identity: 20%
PDB header:hydrolase
Chain: D: PDB Molecule:arsenical pump-driving atpase;
PDBTitle: crystal structure of get3 from methanocaldococcus jannaschii

Phyre2
1

d1byia_
2

c3of5A_
3

c2qmoA_
4

c3fmfA_
5

d2afhe1
6

d1cp2a_
7

d1g3qa_
8

d1hyqa_
9

c1hyqA_
10

d1iona_
11

c2ph1A_
12

c3kjgB_
13

c3ea0B_
14

c2ozeA_
15

c3endA_
16

c2bekB_
17

c3fkqA_
18

c3ez6B_
19

c3q9lB_
20

c3ug7D_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1byia_



100.0 52 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
2c3of5A_



100.0 26 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of a dethiobiotin synthetase from francisella2 tularensis subsp. tularensis schu s4
3c2qmoA_



100.0 19 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of dethiobiotin synthetase (biod) from helicobacter2 pylori
4c3fmfA_



100.0 25 PDB header:ligase
Chain: A: PDB Molecule:dethiobiotin synthetase;
PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate
5d2afhe1



99.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
6d1cp2a_



99.9 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
7d1g3qa_



99.9 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
8d1hyqa_



99.9 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
9c1hyqA_



99.9 20 PDB header:cell cycle
Chain: A: PDB Molecule:cell division inhibitor (mind-1);
PDBTitle: mind bacterial cell division regulator from a. fulgidus
10d1iona_



99.9 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
11c2ph1A_



99.9 16 PDB header:ligand binding protein
Chain: A: PDB Molecule:nucleotide-binding protein;
PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165
12c3kjgB_



99.9 17 PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory
PDBTitle: adp-bound state of cooc1
13c3ea0B_



99.9 14 PDB header:hydrolase
Chain: B: PDB Molecule:atpase, para family;
PDBTitle: crystal structure of para family atpase from chlorobium tepidum tls
14c2ozeA_



99.9 13 PDB header:dna binding protein
Chain: A: PDB Molecule:orf delta';
PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes
15c3endA_



99.9 20 PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase
PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein
16c2bekB_



99.9 17 PDB header:chromosome segregation
Chain: B: PDB Molecule:segregation protein;
PDBTitle: structure of the bacterial chromosome segregation protein2 soj
17c3fkqA_



99.9 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntrc-like two-domain protein;
PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution
18c3ez6B_



99.9 14 PDB header:dna binding protein
Chain: B: PDB Molecule:plasmid partition protein a;
PDBTitle: structure of para-adp complex:tetragonal form
19c3q9lB_



99.9 12 PDB header:cell cycle, hydrolase
Chain: B: PDB Molecule:septum site-determining protein mind;
PDBTitle: the structure of the dimeric e.coli mind-atp complex
20c3ug7D_



99.9 20 PDB header:hydrolase
Chain: D: PDB Molecule:arsenical pump-driving atpase;
PDBTitle: crystal structure of get3 from methanocaldococcus jannaschii
21c2xj9B_



not modelled 99.9 12 PDB header:replication
Chain: B: PDB Molecule:mipz;
PDBTitle: dimer structure of the bacterial cell division regulator mipz
22c3zq6D_



not modelled 99.9 19 PDB header:hydrolase
Chain: D: PDB Molecule:putative arsenical pump-driving atpase;
PDBTitle: adp-alf4 complex of m. therm. trc40
23c2wojD_



not modelled 99.8 12 PDB header:hydrolase
Chain: D: PDB Molecule:atpase get3;
PDBTitle: adp-alf4 complex of s. cerevisiae get3
24c2wooC_



not modelled 99.8 15 PDB header:hydrolase
Chain: C: PDB Molecule:atpase get3;
PDBTitle: nucleotide-free form of s. pombe get3
25c3cioA_



not modelled 99.8 14 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:tyrosine-protein kinase etk;
PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk
26c3la6P_



not modelled 99.8 14 PDB header:transferase
Chain: P: PDB Molecule:tyrosine-protein kinase wzc;
PDBTitle: octameric kinase domain of the e. coli tyrosine kinase wzc with bound2 adp
27c1ii0A_



not modelled 99.8 26 PDB header:hydrolase
Chain: A: PDB Molecule:arsenical pump-driving atpase;
PDBTitle: crystal structure of the escherichia coli arsenite-translocating2 atpase
28c3k9gA_



not modelled 99.8 13 PDB header:biosynthetic protein
Chain: A: PDB Molecule:pf-32 protein;
PDBTitle: crystal structure of a plasmid partition protein from borrelia2 burgdorferi at 2.25a resolution, iodide soak
29c3ibgF_



not modelled 99.8 15 PDB header:hydrolase
Chain: F: PDB Molecule:atpase, subunit of the get complex;
PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp
30d1ihua1



not modelled 99.8 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
31d1ihua2



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
32c2vedA_



not modelled 99.8 14 PDB header:transferase
Chain: A: PDB Molecule:membrane protein capa1, protein tyrosine kinase;
PDBTitle: crystal structure of the chimerical mutant capabk55m2 protein
33c3io3A_



not modelled 99.8 13 PDB header:chaperone
Chain: A: PDB Molecule:deha2d07832p;
PDBTitle: get3 with adp from d. hansenii in closed form
34c3ezfA_



not modelled 99.8 9 PDB header:biosynthetic protein
Chain: A: PDB Molecule:para;
PDBTitle: partition protein
35c3pg5A_



not modelled 99.8 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein dip2308 from corynebacterium diphtheriae,2 northeast structural genomics consortium target cdr78
36c3cwqB_



not modelled 99.8 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:para family chromosome partitioning protein;
PDBTitle: crystal structure of chromosome partitioning protein (para) in complex2 with adp from synechocystis sp. northeast structural genomics3 consortium target sgr89
37c3igfB_



not modelled 99.7 16 PDB header:atp binding protein
Chain: B: PDB Molecule:all4481 protein;
PDBTitle: crystal structure of the all4481 protein from nostoc sp. pcc 7120,2 northeast structural genomics consortium target nsr300
38c3dm5A_



not modelled 99.4 12 PDB header:rna binding protein, transport protein
Chain: A: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
39c1zu4A_



not modelled 99.4 14 PDB header:protein transport
Chain: A: PDB Molecule:ftsy;
PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
40c2qy9A_



not modelled 99.3 15 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
41c2iy3A_



not modelled 99.3 14 PDB header:rna-binding
Chain: A: PDB Molecule:signal recognition particle protein ffh;
PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
42c2v3cC_



not modelled 99.3 14 PDB header:signaling protein
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
43c1vmaA_



not modelled 99.3 13 PDB header:protein transport
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
44c2j37W_



not modelled 99.2 11 PDB header:ribosome
Chain: W: PDB Molecule:signal recognition particle 54 kda protein
PDBTitle: model of mammalian srp bound to 80s rncs
45c3b9qA_



not modelled 99.2 15 PDB header:protein transport
Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit
PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
46c3dmdA_



not modelled 99.2 13 PDB header:transport protein
Chain: A: PDB Molecule:signal recognition particle receptor;
PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
47c2j7pA_



not modelled 99.2 13 PDB header:signal recognition
Chain: A: PDB Molecule:signal recognition particle protein;
PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
48c2og2A_



not modelled 99.2 15 PDB header:protein transport
Chain: A: PDB Molecule:putative signal recognition particle receptor;
PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
49c1qzwC_



not modelled 99.1 13 PDB header:signaling protein/rna
Chain: C: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
50c2yhsA_



not modelled 99.1 15 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsy;
PDBTitle: structure of the e. coli srp receptor ftsy
51c2cnwF_



not modelled 99.1 17 PDB header:signal recognition
Chain: F: PDB Molecule:cell division protein ftsy;
PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
52c2j289_



not modelled 99.0 14 PDB header:ribosome
Chain: 9: PDB Molecule:signal recognition particle 54;
PDBTitle: model of e. coli srp bound to 70s rncs
53c2obnA_



not modelled 98.8 16 PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a duf1611 family protein (ava_3511) from anabaena2 variabilis atcc 29413 at 2.30 a resolution
54c2px0D_



not modelled 98.7 13 PDB header:biosynthetic protein
Chain: D: PDB Molecule:flagellar biosynthesis protein flhf;
PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
55d1vmaa2



not modelled 98.5 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
56d1qzxa3



not modelled 98.5 10 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
57d1j8yf2



not modelled 98.1 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
58d1ls1a2



not modelled 98.1 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
59c2f1rA_



not modelled 98.1 19 PDB header:biosynthetic protein
Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis
PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
60c2npiB_



not modelled 98.1 14 PDB header:transcription
Chain: B: PDB Molecule:protein clp1;
PDBTitle: clp1-atp-pcf11 complex
61d1xjca_



not modelled 98.0 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
62d2vo1a1



not modelled 98.0 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
63d1s1ma2



not modelled 97.8 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
64c2h5eB_



not modelled 97.8 18 PDB header:translation
Chain: B: PDB Molecule:peptide chain release factor rf-3;
PDBTitle: crystal structure of e.coli polypeptide release factor rf3
65c2ad5B_



not modelled 97.8 17 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
66d1yrba1



not modelled 97.8 10 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
67d2qy9a2



not modelled 97.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
68d2g0ta1



not modelled 97.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
69c1j8yF_



not modelled 97.7 10 PDB header:signaling protein
Chain: F: PDB Molecule:signal recognition 54 kda protein;
PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant
70c1xnjB_



not modelled 97.7 11 PDB header:transferase
Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate
PDBTitle: aps complex of human paps synthetase 1
71c1xp8A_



not modelled 97.7 19 PDB header:dna binding protein
Chain: A: PDB Molecule:reca protein;
PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
72c2recB_



not modelled 97.6 23 PDB header:helicase
PDB COMPND:
73d1nija1



not modelled 97.5 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
74d1x6va3



not modelled 97.5 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Adenosine-5'phosphosulfate kinase (APS kinase)
75c3nvaB_



not modelled 97.4 15 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus
76d1okkd2



not modelled 97.4 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
77d1vcoa2



not modelled 97.4 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
78c2q6tB_



not modelled 97.4 16 PDB header:hydrolase
Chain: B: PDB Molecule:dnab replication fork helicase;
PDBTitle: crystal structure of the thermus aquaticus dnab monomer
79c1vcnA_



not modelled 97.4 18 PDB header:ligase
Chain: A: PDB Molecule:ctp synthetase;
PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion
80d1cr2a_



not modelled 97.4 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
81c3tr5C_



not modelled 97.4 15 PDB header:translation
Chain: C: PDB Molecule:peptide chain release factor 3;
PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
82d1nksa_



not modelled 97.4 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
83c3hr8A_



not modelled 97.3 24 PDB header:recombination
Chain: A: PDB Molecule:protein reca;
PDBTitle: crystal structure of thermotoga maritima reca
84c2w0mA_



not modelled 97.3 11 PDB header:unknown function
Chain: A: PDB Molecule:sso2452;
PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
85d1xp8a1



not modelled 97.3 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
86d1nlfa_



not modelled 97.2 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
87c3cm0A_



not modelled 97.2 23 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of adenylate kinase from thermus2 thermophilus hb8
88c2ywfA_



not modelled 97.1 18 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
89c3cr8C_



not modelled 97.1 29 PDB header:transferase
Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate
PDBTitle: hexameric aps kinase from thiobacillus denitrificans
90d2dy1a2



not modelled 97.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
91c2gksB_



not modelled 97.1 21 PDB header:transferase
Chain: B: PDB Molecule:bifunctional sat/aps kinase;
PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
92d1tf7a2



not modelled 97.1 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
93c2dy1A_



not modelled 97.1 17 PDB header:signaling protein, translation
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: crystal structure of ef-g-2 from thermus thermophilus
94c3bgwD_



not modelled 97.0 16 PDB header:replication
Chain: D: PDB Molecule:dnab-like replicative helicase;
PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
95c3degC_



not modelled 97.0 14 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
96d1rz3a_



not modelled 97.0 31 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
97d2qm8a1



not modelled 97.0 34 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
98c2ar7A_



not modelled 96.9 32 PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase 4;
PDBTitle: crystal structure of human adenylate kinase 4, ak4
99d1ubea1



not modelled 96.9 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
100d1mo6a1



not modelled 96.9 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
101c2qgzA_



not modelled 96.8 24 PDB header:hydrolase
Chain: A: PDB Molecule:putative primosome component;
PDBTitle: crystal structure of a putative primosome component from2 streptococcus pyogenes serotype m3. northeast structural3 genomics target dr58
102d1e6ca_



not modelled 96.8 38 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Shikimate kinase (AroK)
103d1u94a1



not modelled 96.8 31 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
104c2zroA_



not modelled 96.8 24 PDB header:hydrolase
Chain: A: PDB Molecule:protein reca;
PDBTitle: msreca adp form iv
105c3c8uA_



not modelled 96.8 26 PDB header:transferase
Chain: A: PDB Molecule:fructokinase;
PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution
106c2w58B_



not modelled 96.7 26 PDB header:hydrolase
Chain: B: PDB Molecule:primosome component (helicase loader);
PDBTitle: crystal structure of the dnai
107c2yvuA_



not modelled 96.7 26 PDB header:transferase
Chain: A: PDB Molecule:probable adenylyl-sulfate kinase;
PDBTitle: crystal structure of ape1195
108c3i4fD_



not modelled 96.7 20 PDB header:oxidoreductase
Chain: D: PDB Molecule:3-oxoacyl-[acyl-carrier protein] reductase;
PDBTitle: structure of putative 3-oxoacyl-reductase from bacillus thuringiensis
109d1khta_



not modelled 96.7 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
110d1np6a_



not modelled 96.7 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
111c3bosA_



not modelled 96.6 13 PDB header:hydrolase regulator,dna binding protein
Chain: A: PDB Molecule:putative dna replication factor;
PDBTitle: crystal structure of a putative dna replication regulator hda2 (sama_1916) from shewanella amazonensis sb2b at 1.75 a resolution
112d1ki9a_



not modelled 96.6 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nucleotide and nucleoside kinases
113d2i3ba1



not modelled 96.6 33 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
114d1odfa_



not modelled 96.6 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Phosphoribulokinase/pantothenate kinase
115c3cmvG_



not modelled 96.6 30 PDB header:recombination
Chain: G: PDB Molecule:protein reca;
PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
116d1eg7a_



not modelled 96.6 42 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
117c3tqcB_



not modelled 96.6 29 PDB header:transferase
Chain: B: PDB Molecule:pantothenate kinase;
PDBTitle: structure of the pantothenate kinase (coaa) from coxiella burnetii
118d1g5ta_



not modelled 96.6 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
119c2bm0A_



not modelled 96.6 15 PDB header:elongation factor
Chain: A: PDB Molecule:elongation factor g;
PDBTitle: ribosomal elongation factor g (ef-g) fusidic acid resistant2 mutant t84a
120c3lv8A_



not modelled 96.6 21 PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0