Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	F	F	I	S	D	A	V	A	A	T	G	A	P	A	Q	G	S	P	M	S	L	I	L	M	L	V	V	F	G	L	I	F	Y	F	M	I	L	R	P	Q	Q	K	R	T	K	E	H	K	K	L	M	D	S	I	A	K	G	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?	?	?																																			?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Sequence		E	V	L	T	N	G	G	L	V	G	R	V	T	K	V	A	E	N	G	Y	I	A	I	A	L	N	D	T	T	E	V	V	I	K	R	D	F	V	A	A	V	L	P	K	G	T	M	K	A	L
Secondary structure
SS confidence
Disorder																																					?				?	?			?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2rdd chain B Region: 19 - 55 Aligned: 37 Modelled: 37 Confidence: 99.1% Identity: 100% PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. Phyre2 PDB 2j5u chain B Region: 54 - 94 Aligned: 41 Modelled: 41 Confidence: 88.7% Identity: 27% PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes Phyre2 PDB 2qf4 chain A Region: 54 - 87 Aligned: 34 Modelled: 34 Confidence: 88.1% Identity: 35% PDB header:structural protein Chain: A: PDB Molecule:cell shape determining protein mrec; PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form) Phyre2 PDB 2do3 chain A domain 1 Region: 51 - 93 Aligned: 43 Modelled: 43 Confidence: 83.5% Identity: 26% Fold: SH3-like barrel Superfamily: Translation proteins SH3-like domain Family: SPT5 KOW domain-like Phyre2 PDB 1pkm chain A domain 1 Region: 49 - 92 Aligned: 43 Modelled: 44 Confidence: 77.4% Identity: 12% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: Pyruvate kinase beta-barrel domain Phyre2 PDB 2g50 chain A domain 1 Region: 49 - 92 Aligned: 43 Modelled: 44 Confidence: 76.9% Identity: 12% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: Pyruvate kinase beta-barrel domain Phyre2 PDB 1a3x chain A domain 1 Region: 49 - 92 Aligned: 44 Modelled: 44 Confidence: 73.8% Identity: 14% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: Pyruvate kinase beta-barrel domain Phyre2 PDB 1pkl chain A domain 1 Region: 49 - 92 Aligned: 44 Modelled: 44 Confidence: 72.7% Identity: 9% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: Pyruvate kinase beta-barrel domain Phyre2 PDB 1liu chain A domain 1 Region: 49 - 92 Aligned: 43 Modelled: 44 Confidence: 72.6% Identity: 12% Fold: PK beta-barrel domain-like Superfamily: PK beta-barrel domain-like Family: Pyruvate kinase beta-barrel domain Phyre2 PDB 1kq1 chain W Region: 68 - 104 Aligned: 35 Modelled: 37 Confidence: 70.4% Identity: 6% PDB header:translation Chain: W: PDB Molecule:host factor for q beta; PDBTitle: 1.55 a crystal structure of the pleiotropic translational2 regulator, hfq Phyre2 PDB 3qhs chain D Region: 68 - 104 Aligned: 34 Modelled: 37 Confidence: 68.5% Identity: 18% PDB header:rna binding protein Chain: D: PDB Molecule:protein hfq; PDBTitle: crystal structure of full-length hfq from escherichia coli Phyre2 PDB 1hk9 chain A Region: 68 - 103 Aligned: 33 Modelled: 36 Confidence: 67.5% Identity: 18% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Pleiotropic translational regulator Hfq Phyre2 PDB 2vv5 chain D Region: 56 - 100 Aligned: 43 Modelled: 45 Confidence: 64.6% Identity: 26% PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs Phyre2 PDB 1u1s chain A domain 1 Region: 68 - 103 Aligned: 33 Modelled: 36 Confidence: 63.3% Identity: 18% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Pleiotropic translational regulator Hfq Phyre2 PDB 2oar chain A domain 1 Region: 18 - 48 Aligned: 31 Modelled: 31 Confidence: 60.6% Identity: 16% Fold: Gated mechanosensitive channel Superfamily: Gated mechanosensitive channel Family: Gated mechanosensitive channel Phyre2 PDB 2e70 chain A Region: 67 - 99 Aligned: 33 Modelled: 33 Confidence: 56.2% Identity: 15% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 Phyre2 PDB 2vv5 chain A domain 1 Region: 56 - 100 Aligned: 43 Modelled: 45 Confidence: 56.2% Identity: 26% Fold: Sm-like fold Superfamily: Sm-like ribonucleoproteins Family: Mechanosensitive channel protein MscS (YggB), middle domain Phyre2 PDB 2cp6 chain A domain 1 Region: 55 - 89 Aligned: 35 Modelled: 35 Confidence: 55.4% Identity: 26% Fold: SH3-like barrel Superfamily: Cap-Gly domain Family: Cap-Gly domain Phyre2 PDB 2qqs chain B Region: 53 - 98 Aligned: 46 Modelled: 46 Confidence: 54.5% Identity: 24% PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide Phyre2 PDB 2e6z chain A Region: 54 - 88 Aligned: 34 Modelled: 35 Confidence: 52.5% Identity: 26% PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 Phyre2 1 c2rddB_ 2 c2j5uB_ 3 c2qf4A_ 4 d2do3a1 5 d1pkma1 6 d2g50a1 7 d1a3xa1 8 d1pkla1 9 d1liua1 10 c1kq1W_ 11 c3qhsD_ 12 d1hk9a_ 13 c2vv5D_ 14 d1u1sa1 15 d2oara1 16 c2e70A_ 17 d2vv5a1 18 d2cp6a1 19 c2qqsB_ 20 c2e6zA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2rddB_ 99.1 100 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 2 c2j5uB_ 88.7 27 PDB header:cell shape regulation Chain: B: PDB Molecule:mrec protein; PDBTitle: mrec lysteria monocytogenes 3 c2qf4A_ 88.1 35 PDB header:structural protein Chain: A: PDB Molecule:cell shape determining protein mrec; PDBTitle: high resolution structure of the major periplasmic domain from the2 cell shape-determining filament mrec (orthorhombic form) 4 d2do3a1 83.5 26 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:SPT5 KOW domain-like 5 d1pkma1 77.4 12 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 6 d2g50a1 76.9 12 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 7 d1a3xa1 73.8 14 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 8 d1pkla1 72.7 9 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 9 d1liua1 72.6 12 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 10 c1kq1W_ 70.4 6 PDB header:translation Chain: W: PDB Molecule:host factor for q beta; PDBTitle: 1.55 a crystal structure of the pleiotropic translational2 regulator, hfq 11 c3qhsD_ 68.5 18 PDB header:rna binding protein Chain: D: PDB Molecule:protein hfq; PDBTitle: crystal structure of full-length hfq from escherichia coli 12 d1hk9a_ 67.5 18 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 13 c2vv5D_ 64.6 26 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 14 d1u1sa1 63.3 18 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Pleiotropic translational regulator Hfq 15 d2oara1 60.6 16 Fold:Gated mechanosensitive channel Superfamily:Gated mechanosensitive channel Family:Gated mechanosensitive channel 16 c2e70A_ 56.2 15 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the fifth kow motif of human2 transcription elongation factor spt5 17 d2vv5a1 56.2 26 Fold:Sm-like fold Superfamily:Sm-like ribonucleoproteins Family:Mechanosensitive channel protein MscS (YggB), middle domain 18 d2cp6a1 55.4 26 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 19 c2qqsB_ 54.5 24 PDB header:oxidoreductase Chain: B: PDB Molecule:jmjc domain-containing histone demethylation PDBTitle: jmjd2a tandem tudor domains in complex with a trimethylated2 histone h4-k20 peptide 20 c2e6zA_ 52.5 26 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt5; PDBTitle: solution structure of the second kow motif of human2 transcription elongation factor spt5 21 c3hsbB_ not modelled 51.1 18 PDB header:rna binding protein/rna Chain: B: PDB Molecule:protein hfq; PDBTitle: crystal structure of ymah (hfq) from bacillus subtilis in complex with2 an rna aptamer 22 c2l8kA_ not modelled 51.0 17 PDB header:viral protein Chain: A: PDB Molecule:non-structural protein 7; PDBTitle: nmr structure of the arterivirus nonstructural protein 7 alpha (nsp72 alpha) 23 c2equA_ not modelled 49.8 18 PDB header:protein binding Chain: A: PDB Molecule:phd finger protein 20-like 1; PDBTitle: solution structure of the tudor domain of phd finger2 protein 20-like 1 24 c3qiiA_ not modelled 49.5 20 PDB header:transcription regulator Chain: A: PDB Molecule:phd finger protein 20; PDBTitle: crystal structure of tudor domain 2 of human phd finger protein 20 25 c3m9bK_ not modelled 49.4 7 PDB header:chaperone Chain: K: PDB Molecule:proteasome-associated atpase; PDBTitle: crystal structure of the amino terminal coiled coil domain and the2 inter domain of the mycobacterium tuberculosis proteasomal atpase mpa 26 d3bzka4 not modelled 47.7 14 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 27 c2oarA_ not modelled 47.5 16 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) 28 d1e0ta1 not modelled 43.7 17 Fold:PK beta-barrel domain-like Superfamily:PK beta-barrel domain-like Family:Pyruvate kinase beta-barrel domain 29 c1rl2A_ not modelled 43.5 20 PDB header:ribosomal protein Chain: A: PDB Molecule:protein (ribosomal protein l2); PDBTitle: ribosomal protein l2 rna-binding domain from bacillus2 stearothermophilus 30 c3nx6A_ not modelled 41.4 25 PDB header:chaperone Chain: A: PDB Molecule:10kda chaperonin; PDBTitle: crystal structure of co-chaperonin, groes (xoo4289) from xanthomonas2 oryzae pv. oryzae kacc10331 31 c2xdpA_ not modelled 38.9 15 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 4c; PDBTitle: crystal structure of the tudor domain of human jmjd2c 32 d2j01d1 not modelled 38.0 13 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 33 c4a1cA_ not modelled 36.6 17 PDB header:ribosome Chain: A: PDB Molecule:rpl8; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 34 c2khiA_ not modelled 36.3 16 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 4 of the e. coli ribosomal2 protein s1 35 d1pw4a_ not modelled 36.1 10 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 36 c2jwaA_ not modelled 35.5 46 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 37 c3d5bD_ not modelled 34.7 13 PDB header:ribosome Chain: D: PDB Molecule:50s ribosomal protein l2; PDBTitle: structural basis for translation termination on the 70s ribosome. this2 file contains the 50s subunit of one 70s ribosome. the entire crystal3 structure contains two 70s ribosomes as described in remark 400. 38 c2ivwA_ not modelled 33.9 15 PDB header:lipoprotein Chain: A: PDB Molecule:pilp pilot protein; PDBTitle: the solution structure of a domain from the neisseria2 meningitidis pilp pilot protein. 39 c2dzcA_ not modelled 33.7 13 PDB header:ligase Chain: A: PDB Molecule:biotin--[acetyl-coa-carboxylase] ligase; PDBTitle: crystal structure of biotin protein ligase from pyrococcus2 horikoshii, mutation r48a 40 d2qamc1 not modelled 32.4 13 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 41 d1aono_ not modelled 31.1 21 Fold:GroES-like Superfamily:GroES-like Family:GroES 42 d1p3ha_ not modelled 30.3 25 Fold:GroES-like Superfamily:GroES-like Family:GroES 43 d2isba1 not modelled 30.2 25 Fold:The "swivelling" beta/beta/alpha domain Superfamily:FumA C-terminal domain-like Family:FumA C-terminal domain-like 44 d2ar1a1 not modelled 28.7 27 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 45 c1aqfB_ not modelled 28.0 15 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: pyruvate kinase from rabbit muscle with mg, k, and l-2 phospholactate 46 c1kqsA_ not modelled 27.8 11 PDB header:ribosome Chain: A: PDB Molecule:ribosomal protein l2; PDBTitle: the haloarcula marismortui 50s complexed with a2 pretranslocational intermediate in protein synthesis 47 d1vqot1 not modelled 27.3 31 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 48 d1we3o_ not modelled 27.0 19 Fold:GroES-like Superfamily:GroES-like Family:GroES 49 d2zjrr1 not modelled 26.7 23 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:Ribosomal proteins L24p and L21e 50 d1rl2a1 not modelled 26.6 21 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:C-terminal domain of ribosomal protein L2 51 c2pqaB_ not modelled 26.5 19 PDB header:replication Chain: B: PDB Molecule:replication protein a 14 kda subunit; PDBTitle: crystal structure of full-length human rpa 14/32 heterodimer 52 c2khjA_ not modelled 26.2 34 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s1; PDBTitle: nmr structure of the domain 6 of the e. coli ribosomal2 protein s1 53 c3iz5Y_ not modelled 25.9 34 PDB header:ribosome Chain: Y: PDB Molecule:60s ribosomal protein l26 (l24p); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 54 c3pifD_ not modelled 25.8 26 PDB header:hydrolase Chain: D: PDB Molecule:5'->3' exoribonuclease (xrn1); PDBTitle: crystal structure of the 5'->3' exoribonuclease xrn1, e178q mutant in2 complex with manganese 55 c3qnqD_ not modelled 25.6 8 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 56 d1ib8a1 not modelled 25.5 21 Fold:Sm-like fold Superfamily:YhbC-like, C-terminal domain Family:YhbC-like, C-terminal domain 57 d2pi2e1 not modelled 25.4 19 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Single strand DNA-binding domain, SSB 58 c3bdlA_ not modelled 25.0 23 PDB header:hydrolase Chain: A: PDB Molecule:staphylococcal nuclease domain-containing PDBTitle: crystal structure of a truncated human tudor-sn 59 c3p8bB_ not modelled 24.4 30 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 60 d1tova_ not modelled 23.9 24 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 61 c1dbgA_ not modelled 23.9 13 PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b 62 c4a1cS_ not modelled 23.6 41 PDB header:ribosome Chain: S: PDB Molecule:rpl26; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 63 d2evea1 not modelled 23.4 26 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 64 d1a8pa1 not modelled 22.9 17 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 65 c3hfoC_ not modelled 22.8 14 PDB header:rna binding protein Chain: C: PDB Molecule:ssr3341 protein; PDBTitle: crystal structure of an hfq protein from synechocystis sp. 66 d1sroa_ not modelled 22.8 30 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Cold shock DNA-binding domain-like 67 c2y35A_ not modelled 20.3 23 PDB header:hydrolase/dna Chain: A: PDB Molecule:ld22664p; PDBTitle: crystal structure of xrn1-substrate complex 68 c1vpzB_ not modelled 20.3 21 PDB header:rna binding protein Chain: B: PDB Molecule:carbon storage regulator homolog; PDBTitle: crystal structure of a putative carbon storage regulator protein2 (csra, pa0905) from pseudomonas aeruginosa at 2.05 a resolution 69 c3pr9A_ not modelled 19.0 21 PDB header:chaperone Chain: A: PDB Molecule:fkbp-type peptidyl-prolyl cis-trans isomerase; PDBTitle: structural analysis of protein folding by the methanococcus jannaschii2 chaperone fkbp26 70 c2jvvA_ not modelled 18.7 23 PDB header:transcription Chain: A: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of e. coli nusg carboxyterminal domain 71 c2kvqG_ not modelled 18.7 23 PDB header:transcription Chain: G: PDB Molecule:transcription antitermination protein nusg; PDBTitle: solution structure of nuse:nusg-ctd complex 72 c2jppB_ not modelled 18.6 13 PDB header:translation/rna Chain: B: PDB Molecule:translational repressor; PDBTitle: structural basis of rsma/csra rna recognition: structure of2 rsme bound to the shine-dalgarno sequence of hcna mrna 73 c3qglD_ not modelled 18.5 31 PDB header:protein binding Chain: D: PDB Molecule:sorting nexin-27; PDBTitle: crystal structure of pdz domain of sorting nexin 27 (snx27) in complex2 with the eseskv peptide corresponding to the c-terminal tail of girk3 74 d1vpza_ not modelled 18.3 21 Fold:CsrA-like Superfamily:CsrA-like Family:CsrA-like 75 c2dluA_ not modelled 17.9 26 PDB header:protein binding Chain: A: PDB Molecule:inad-like protein; PDBTitle: solution structure of the second pdz domain of human inad-2 like protein 76 c3ma8A_ not modelled 17.8 27 PDB header:transferase Chain: A: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of cgd1_2040, a pyruvate kinase from cryptosporidium2 parvum 77 d1g31a_ not modelled 17.7 36 Fold:GroES-like Superfamily:GroES-like Family:GroES 78 c2lc4A_ not modelled 17.6 15 PDB header:structural protein Chain: A: PDB Molecule:pilp protein; PDBTitle: solution structure of pilp from pseudomonas aeruginosa 79 d1wfva_ not modelled 17.6 16 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 80 d1nxza1 not modelled 17.4 3 Fold:PUA domain-like Superfamily:PUA domain-like Family:YggJ N-terminal domain-like 81 d1x5qa1 not modelled 17.4 25 Fold:PDZ domain-like Superfamily:PDZ domain-like Family:PDZ domain 82 d1fdra1 not modelled 17.4 25 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 83 d2g2xa1 not modelled 17.3 19 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 84 c3e0vB_ not modelled 17.3 9 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase; PDBTitle: crystal structure of pyruvate kinase from leishmania mexicana in2 complex with sulphate ions 85 d1fnda1 not modelled 17.1 30 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 86 c2e4hA_ not modelled 17.0 32 PDB header:structural protein Chain: A: PDB Molecule:restin; PDBTitle: solution structure of cytoskeletal protein in complex with2 tubulin tail 87 c2he4A_ not modelled 16.9 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:na(+)/h(+) exchange regulatory cofactor nhe-rf2; PDBTitle: the crystal structure of the second pdz domain of human2 nherf-2 (slc9a3r2) interacting with a mode 1 pdz binding3 motif 88 d2eyqa1 not modelled 16.8 15 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 89 d2cp2a1 not modelled 16.6 26 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 90 d2bmwa1 not modelled 16.4 35 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 91 d1nz9a_ not modelled 16.3 26 Fold:SH3-like barrel Superfamily:Translation proteins SH3-like domain Family:N-utilization substance G protein NusG, C-terminal domain 92 c2q9vA_ not modelled 16.1 21 PDB header:transferase Chain: A: PDB Molecule:membrane-associated guanylate kinase, ww and pdz domain- PDBTitle: crystal structure of the c890s mutant of the 4th pdz domain of human2 membrane associated guanylate kinase 93 d1xnea_ not modelled 16.0 26 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 94 d2cp0a1 not modelled 15.8 27 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 95 d1h9ra2 not modelled 15.6 20 Fold:OB-fold Superfamily:MOP-like Family:BiMOP, duplicated molybdate-binding domain 96 c1t5aB_ not modelled 15.4 10 PDB header:transferase Chain: B: PDB Molecule:pyruvate kinase, m2 isozyme; PDBTitle: human pyruvate kinase m2 97 d2piaa1 not modelled 15.1 24 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Riboflavin synthase domain-like Family:Ferredoxin reductase FAD-binding domain-like 98 c2p5dA_ not modelled 15.1 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0310 protein mjecl36; PDBTitle: crystal structure of mjecl36 from methanocaldococcus2 jannaschii dsm 2661 99 c3iz5G_ not modelled 14.9 23 PDB header:ribosome Chain: G: PDB Molecule:60s ribosomal protein l6 (l6e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0