Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	S	M	L	V	V	V	T	E	N	V	P	P	R	L	R	G	R	L	A	I	W	L	L	E	V	R	A	G	V	Y	V	G	D	V	S	A	K	I	R	E	M	I	W	E	Q	I	A	G	L	A	E	E	G	N	V	V	M	A	W
Secondary structure
SS confidence
Disorder		?	?																											?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Sequence		A	T	N	T	E	T	G	F	E	F	Q	T	F	G	L	N	R	R	T	P	V	D	L	D	G	L	R	L	V	S	F	L	P	V
Secondary structure
SS confidence
Disorder																															?		?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3oq2 chain A Region: 2 - 77 Aligned: 76 Modelled: 76 Confidence: 71.3% Identity: 14% PDB header:immune system Chain: A: PDB Molecule:crispr-associated protein cas2; PDBTitle: structure of a crispr associated protein cas2 from desulfovibrio2 vulgaris Phyre2 PDB 1zpw chain X domain 1 Region: 3 - 65 Aligned: 63 Modelled: 63 Confidence: 56.3% Identity: 17% Fold: Ferredoxin-like Superfamily: TTP0101/SSO1404-like Family: TTP0101/SSO1404-like Phyre2 PDB 2i0x chain A domain 1 Region: 3 - 64 Aligned: 62 Modelled: 62 Confidence: 44.4% Identity: 24% Fold: Ferredoxin-like Superfamily: TTP0101/SSO1404-like Family: TTP0101/SSO1404-like Phyre2 PDB 2ivy chain A domain 1 Region: 2 - 63 Aligned: 62 Modelled: 62 Confidence: 39.2% Identity: 16% Fold: Ferredoxin-like Superfamily: TTP0101/SSO1404-like Family: TTP0101/SSO1404-like Phyre2 PDB 1yz4 chain A Region: 18 - 37 Aligned: 20 Modelled: 20 Confidence: 34.1% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase-like 15 isoform a; PDBTitle: crystal structure of dusp15 Phyre2 PDB 2p4d chain A Region: 16 - 34 Aligned: 19 Modelled: 19 Confidence: 29.1% Identity: 26% PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: structure-assisted discovery of variola major h12 phosphatase inhibitors Phyre2 PDB 1m3g chain A Region: 23 - 47 Aligned: 25 Modelled: 25 Confidence: 22.5% Identity: 12% Fold: (Phosphotyrosine protein) phosphatases II Superfamily: (Phosphotyrosine protein) phosphatases II Family: Dual specificity phosphatase-like Phyre2 PDB 2e5j chain A Region: 25 - 75 Aligned: 49 Modelled: 51 Confidence: 22.4% Identity: 18% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:methenyltetrahydrofolate synthetase domain PDBTitle: solution structure of rna binding domain in2 methenyltetrahydrofolate synthetase domain containing Phyre2 PDB 1zzw chain A Region: 23 - 37 Aligned: 15 Modelled: 15 Confidence: 21.6% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of catalytic domain of human map kinase2 phosphatase 5 Phyre2 PDB 1h4v chain B domain 1 Region: 25 - 64 Aligned: 40 Modelled: 40 Confidence: 20.8% Identity: 13% Fold: Anticodon-binding domain-like Superfamily: Class II aaRS ABD-related Family: Anticodon-binding domain of Class II aaRS Phyre2 PDB 1wf0 chain A Region: 30 - 75 Aligned: 44 Modelled: 46 Confidence: 20.5% Identity: 23% Fold: Ferredoxin-like Superfamily: RNA-binding domain, RBD Family: Canonical RBD Phyre2 PDB 1x52 chain A domain 1 Region: 34 - 74 Aligned: 41 Modelled: 41 Confidence: 20.4% Identity: 10% Fold: Bacillus chorismate mutase-like Superfamily: L30e-like Family: ERF1/Dom34 C-terminal domain-like Phyre2 PDB 3cwv chain B Region: 27 - 51 Aligned: 25 Modelled: 25 Confidence: 20.0% Identity: 20% PDB header:isomerase Chain: B: PDB Molecule:dna gyrase, b subunit, truncated; PDBTitle: crystal structure of b-subunit of the dna gyrase from myxococcus2 xanthus Phyre2 PDB 2dgy chain A Region: 58 - 93 Aligned: 36 Modelled: 36 Confidence: 19.8% Identity: 19% PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein Phyre2 PDB 1f20 chain A domain 2 Region: 26 - 65 Aligned: 40 Modelled: 40 Confidence: 19.5% Identity: 8% Fold: Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain Family: NADPH-cytochrome p450 reductase-like Phyre2 PDB 2r0b chain A Region: 23 - 52 Aligned: 30 Modelled: 30 Confidence: 19.0% Identity: 13% PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine/tyrosine-interacting protein; PDBTitle: crystal structure of human tyrosine phosphatase-like2 serine/threonine/tyrosine-interacting protein Phyre2 PDB 2oqk chain A Region: 58 - 93 Aligned: 36 Modelled: 36 Confidence: 16.3% Identity: 14% PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a Phyre2 PDB 3lnu chain A Region: 27 - 51 Aligned: 23 Modelled: 25 Confidence: 15.7% Identity: 30% PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit b; PDBTitle: crystal structure of pare subunit Phyre2 PDB 1no8 chain A Region: 30 - 76 Aligned: 47 Modelled: 47 Confidence: 15.7% Identity: 13% PDB header:rna binding protein Chain: A: PDB Molecule:aly; PDBTitle: solution structure of the nuclear factor aly rbd domain Phyre2 PDB 1no8 chain A Region: 30 - 76 Aligned: 47 Modelled: 47 Confidence: 15.7% Identity: 13% Fold: Ferredoxin-like Superfamily: RNA-binding domain, RBD Family: Canonical RBD Phyre2 1 c3oq2A_ 2 d1zpwx1 3 d2i0xa1 4 d2ivya1 5 c1yz4A_ 6 c2p4dA_ 7 d1m3ga_ 8 c2e5jA_ 9 c1zzwA_ 10 d1h4vb1 11 d1wf0a_ 12 d1x52a1 13 c3cwvB_ 14 c2dgyA_ 15 d1f20a2 16 c2r0bA_ 17 c2oqkA_ 18 c3lnuA_ 19 c1no8A_ 20 d1no8a_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3oq2A_ 71.3 14 PDB header:immune system Chain: A: PDB Molecule:crispr-associated protein cas2; PDBTitle: structure of a crispr associated protein cas2 from desulfovibrio2 vulgaris 2 d1zpwx1 56.3 17 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 3 d2i0xa1 44.4 24 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 4 d2ivya1 39.2 16 Fold:Ferredoxin-like Superfamily:TTP0101/SSO1404-like Family:TTP0101/SSO1404-like 5 c1yz4A_ 34.1 20 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase-like 15 isoform a; PDBTitle: crystal structure of dusp15 6 c2p4dA_ 29.1 26 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: structure-assisted discovery of variola major h12 phosphatase inhibitors 7 d1m3ga_ 22.5 12 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 8 c2e5jA_ 22.4 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:methenyltetrahydrofolate synthetase domain PDBTitle: solution structure of rna binding domain in2 methenyltetrahydrofolate synthetase domain containing 9 c1zzwA_ 21.6 13 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of catalytic domain of human map kinase2 phosphatase 5 10 d1h4vb1 20.8 13 Fold:Anticodon-binding domain-like Superfamily:Class II aaRS ABD-related Family:Anticodon-binding domain of Class II aaRS 11 d1wf0a_ 20.5 23 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 12 d1x52a1 20.4 10 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 13 c3cwvB_ 20.0 20 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase, b subunit, truncated; PDBTitle: crystal structure of b-subunit of the dna gyrase from myxococcus2 xanthus 14 c2dgyA_ 19.8 19 PDB header:translation Chain: A: PDB Molecule:mgc11102 protein; PDBTitle: solution structure of the eukaryotic initiation factor 1a2 in mgc11102 protein 15 d1f20a2 19.5 8 Fold:Ferredoxin reductase-like, C-terminal NADP-linked domain Superfamily:Ferredoxin reductase-like, C-terminal NADP-linked domain Family:NADPH-cytochrome p450 reductase-like 16 c2r0bA_ 19.0 13 PDB header:hydrolase Chain: A: PDB Molecule:serine/threonine/tyrosine-interacting protein; PDBTitle: crystal structure of human tyrosine phosphatase-like2 serine/threonine/tyrosine-interacting protein 17 c2oqkA_ 16.3 14 PDB header:translation Chain: A: PDB Molecule:putative translation initiation factor eif-1a; PDBTitle: crystal structure of putative cryptosporidium parvum translation2 initiation factor eif-1a 18 c3lnuA_ 15.7 30 PDB header:isomerase Chain: A: PDB Molecule:topoisomerase iv subunit b; PDBTitle: crystal structure of pare subunit 19 c1no8A_ 15.7 13 PDB header:rna binding protein Chain: A: PDB Molecule:aly; PDBTitle: solution structure of the nuclear factor aly rbd domain 20 d1no8a_ 15.7 13 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 21 c2osrA_ not modelled 14.7 9 PDB header:rna binding protein Chain: A: PDB Molecule:nucleolar protein 3; PDBTitle: nmr structure of rrm-2 of yeast npl3 protein 22 c2esbA_ not modelled 14.6 20 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 18; PDBTitle: crystal structure of human dusp18 23 c3d0jA_ not modelled 14.3 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824 24 c2e0tA_ not modelled 14.3 35 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase 26; PDBTitle: crystal structure of catalytic domain of dual specificity phosphatase2 26, ms0830 from homo sapiens 25 c3pgwP_ not modelled 14.3 14 PDB header:splicing/dna/rna Chain: P: PDB Molecule:u1-a; PDBTitle: crystal structure of human u1 snrnp 26 c2wgpA_ not modelled 14.2 8 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 14; PDBTitle: crystal structure of human dual specificity phosphatase 14 27 c2y96A_ not modelled 13.4 36 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase dupd1; PDBTitle: structure of human dual-specificity phosphatase 27 28 c2oudA_ not modelled 13.2 14 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase 10; PDBTitle: crystal structure of the catalytic domain of human mkp5 29 c2hcmA_ not modelled 13.2 17 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity protein phosphatase; PDBTitle: crystal structure of mouse putative dual specificity phosphatase2 complexed with zinc tungstate, new york structural genomics3 consortium 30 c1wrmA_ not modelled 12.9 20 PDB header:hydrolase Chain: A: PDB Molecule:dual specificity phosphatase 22; PDBTitle: crystal structure of jsp-1 31 c3ek1C_ not modelled 12.6 20 PDB header:oxidoreductase Chain: C: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from brucella2 melitensis biovar abortus 2308 32 d1jl0a_ not modelled 12.4 12 Fold:S-adenosylmethionine decarboxylase Superfamily:S-adenosylmethionine decarboxylase Family:S-adenosylmethionine decarboxylase 33 c3jz4C_ not modelled 11.8 25 PDB header:oxidoreductase Chain: C: PDB Molecule:succinate-semialdehyde dehydrogenase [nadp+]; PDBTitle: crystal structure of e. coli nadp dependent enzyme 34 d2f9da1 not modelled 10.9 18 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 35 d1pvga2 not modelled 10.6 24 Fold:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Superfamily:ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Family:DNA gyrase/MutL, N-terminal domain 36 c1qzrA_ not modelled 10.1 24 PDB header:isomerase Chain: A: PDB Molecule:dna topoisomerase ii; PDBTitle: crystal structure of the atpase region of saccharomyces cerevisiae2 topoisomerase ii bound to icrf-187 (dexrazoxane) 37 d2vgna3 not modelled 10.1 15 Fold:Bacillus chorismate mutase-like Superfamily:L30e-like Family:ERF1/Dom34 C-terminal domain-like 38 c3emuA_ not modelled 10.0 14 PDB header:hydrolase Chain: A: PDB Molecule:leucine rich repeat and phosphatase domain PDBTitle: crystal structure of a leucine rich repeat and phosphatase2 domain containing protein from entamoeba histolytica 39 d1mkpa_ not modelled 9.9 21 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 40 d2ghpa2 not modelled 9.8 13 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 41 d1vhra_ not modelled 9.6 38 Fold:(Phosphotyrosine protein) phosphatases II Superfamily:(Phosphotyrosine protein) phosphatases II Family:Dual specificity phosphatase-like 42 c1zxnB_ not modelled 9.4 24 PDB header:isomerase Chain: B: PDB Molecule:dna topoisomerase ii, alpha isozyme; PDBTitle: human dna topoisomerase iia atpase/adp 43 d1uawa_ not modelled 9.2 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 44 c2kkuA_ not modelled 9.0 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution structure of protein af2351 from archaeoglobus2 fulgidus. northeast structural genomics consortium target3 att9/ontario center for structural proteomics target af2351 45 d1o04a_ not modelled 8.8 18 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 46 c3pgwS_ not modelled 8.7 12 PDB header:splicing/dna/rna Chain: S: PDB Molecule:u1-70k; PDBTitle: crystal structure of human u1 snrnp 47 c2g6zB_ not modelled 8.5 27 PDB header:hydrolase Chain: B: PDB Molecule:dual specificity protein phosphatase 5; PDBTitle: crystal structure of human dusp5 48 c1flcB_ not modelled 8.5 25 PDB header:hydrolase Chain: B: PDB Molecule:haemagglutinin-esterase-fusion glycoprotein; PDBTitle: x-ray structure of the haemagglutinin-esterase-fusion glycoprotein of2 influenza c virus 49 c2e44A_ not modelled 8.3 9 PDB header:rna binding protein Chain: A: PDB Molecule:insulin-like growth factor 2 mrna binding PDBTitle: solution structure of rna binding domain in insulin-like2 growth factor 2 mrna binding protein 3 50 d2cq3a1 not modelled 8.2 20 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 51 d1sqwa1 not modelled 8.0 14 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 52 d1vpqa_ not modelled 8.0 19 Fold:TIM beta/alpha-barrel Superfamily:TM1631-like Family:TM1631-like 53 c2gwoC_ not modelled 7.9 33 PDB header:hydrolase Chain: C: PDB Molecule:dual specificity protein phosphatase 13; PDBTitle: crystal structure of tmdp 54 c3ifgH_ not modelled 7.6 21 PDB header:oxidoreductase Chain: H: PDB Molecule:succinate-semialdehyde dehydrogenase (nadp+); PDBTitle: crystal structure of succinate-semialdehyde dehydrogenase from2 burkholderia pseudomallei, part 1 of 2 55 d2cpja1 not modelled 7.6 23 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 56 c3lyrA_ not modelled 7.6 13 PDB header:transcription activator Chain: A: PDB Molecule:transcription factor coe1; PDBTitle: human early b-cell factor 1 (ebf1) dna-binding domain 57 c1s16B_ not modelled 7.4 26 PDB header:isomerase Chain: B: PDB Molecule:topoisomerase iv subunit b; PDBTitle: crystal structure of e. coli topoisomerase iv pare 43kda subunit2 complexed with adpnp 58 c2nt2C_ not modelled 7.3 18 PDB header:hydrolase Chain: C: PDB Molecule:protein phosphatase slingshot homolog 2; PDBTitle: crystal structure of slingshot phosphatase 2 59 c2vgmA_ not modelled 7.2 15 PDB header:cell cycle Chain: A: PDB Molecule:dom34; PDBTitle: structure of yeast dom34 : a protein related to translation2 termination factor erf1 and involved in no-go decay. 60 c3ed6B_ not modelled 6.9 16 PDB header:oxidoreductase Chain: B: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: 1.7 angstrom resolution crystal structure of betaine aldehyde2 dehydrogenase (betb) from staphylococcus aureus 61 c3b4wA_ not modelled 6.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of mycobacterium tuberculosis aldehyde dehydrogenase2 complexed with nad+ 62 c3s01A_ not modelled 6.8 11 PDB header:rna binding protein Chain: A: PDB Molecule:heterogeneous nuclear ribonucleoprotein l; PDBTitle: crystal structure of a heterogeneous nuclear ribonucleoprotein l2 (hnrpl) from mus musculus at 2.15 a resolution 63 c3bs9A_ not modelled 6.8 19 PDB header:rna binding protein Chain: A: PDB Molecule:nucleolysin tia-1 isoform p40; PDBTitle: x-ray structure of human tia-1 rrm2 64 d1fjca_ not modelled 6.7 14 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 65 c2hvzA_ not modelled 6.7 23 PDB header:rna binding protein Chain: A: PDB Molecule:splicing factor, arginine/serine-rich 7; PDBTitle: solution structure of the rrm domain of sr rich factor 9g8 66 c3p6yD_ not modelled 6.7 7 PDB header:rna binding protein/rna Chain: D: PDB Molecule:cleavage and polyadenylation specificity factor subunit 6; PDBTitle: cf im25-cf im68-uguaa complex 67 d1y0na_ not modelled 6.6 14 Fold:YehU-like Superfamily:YehU-like Family:YehU-like 68 d1x4aa1 not modelled 6.5 19 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 69 d1fnxh1 not modelled 6.5 10 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 70 c2fhoB_ not modelled 6.4 17 PDB header:rna binding protein Chain: B: PDB Molecule:spliceosomal protein p14; PDBTitle: nmr solution structure of the human spliceosomal protein2 complex p14-sf3b155 71 c2i38A_ not modelled 6.3 23 PDB header:rna binding protein/chimera Chain: A: PDB Molecule:fusion protein consists of immunoglobin g- PDBTitle: solution structure of the rrm of srp20 72 c3mlpE_ not modelled 6.2 13 PDB header:transcription/dna Chain: E: PDB Molecule:transcription factor coe1; PDBTitle: early b-cell factor 1 (ebf1) bound to dna 73 c2zamA_ not modelled 6.1 21 PDB header:protein transport Chain: A: PDB Molecule:vacuolar protein sorting-associating protein 4b; PDBTitle: crystal structure of mouse skd1/vps4b apo-form 74 c3r31A_ not modelled 6.1 20 PDB header:oxidoreductase Chain: A: PDB Molecule:betaine aldehyde dehydrogenase; PDBTitle: crystal structure of betaine aldehyde dehydrogenase from agrobacterium2 tumefaciens 75 c2e5gA_ not modelled 6.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:u6 snrna-specific terminal uridylyltransferase 1; PDBTitle: solution structure of rna binding domain in rna binding2 motif protein 21 76 d2ghpa3 not modelled 6.0 11 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 77 d2qwva1 not modelled 5.9 29 Fold:alpha/beta knot Superfamily:alpha/beta knot Family:AF1056-like 78 c2krbA_ not modelled 5.8 15 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 PDBTitle: solution structure of eif3b-rrm bound to eif3j peptide 79 d2cqia1 not modelled 5.8 17 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 80 c1ei1B_ not modelled 5.8 28 PDB header:isomerase Chain: B: PDB Molecule:dna gyrase b; PDBTitle: dimerization of e. coli dna gyrase b provides a structural mechanism2 for activating the atpase catalytic center 81 c2vroB_ not modelled 5.7 27 PDB header:oxidoreductase Chain: B: PDB Molecule:aldehyde dehydrogenase; PDBTitle: crystal structure of aldehyde dehydrogenase from2 burkholderia xenovorans lb400 82 c2dngA_ not modelled 5.7 20 PDB header:translation Chain: A: PDB Molecule:eukaryotic translation initiation factor 4h; PDBTitle: solution structure of rna binding domain in eukaryotic2 translation initiation factor 4h 83 c1t90B_ not modelled 5.6 20 PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis 84 d1bxsa_ not modelled 5.6 19 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 85 c3ep3A_ not modelled 5.6 17 PDB header:lyase Chain: A: PDB Molecule:s-adenosylmethionine decarboxylase alpha chain; PDBTitle: human adometdc d174n mutant with no putrescine bound 86 c3mcaB_ not modelled 5.5 14 PDB header:translation regulation/hydrolase Chain: B: PDB Molecule:protein dom34; PDBTitle: structure of the dom34-hbs1 complex and implications for its role in2 no-go decay 87 d1fjeb2 not modelled 5.5 14 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 88 d1wi8a_ not modelled 5.5 12 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 89 d1a4sa_ not modelled 5.4 20 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 90 d1ynya1 not modelled 5.3 15 Fold:Composite domain of metallo-dependent hydrolases Superfamily:Composite domain of metallo-dependent hydrolases Family:Hydantoinase (dihydropyrimidinase) 91 d1o89a2 not modelled 5.3 19 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Alcohol dehydrogenase-like, C-terminal domain 92 d3dhwc1 not modelled 5.3 9 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ABC transporter ATPase domain-like 93 d1x0fa1 not modelled 5.2 28 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 94 c3cp0A_ not modelled 5.2 13 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein implicated in regulation of membrane PDBTitle: crystal structure of the soluble domain of membrane protein implicated2 in regulation of membrane protease activity from corynebacterium3 glutamicum 95 d1ky8a_ not modelled 5.2 21 Fold:ALDH-like Superfamily:ALDH-like Family:ALDH-like 96 c2fc9A_ not modelled 5.2 14 PDB header:rna binding protein Chain: A: PDB Molecule:ncl protein; PDBTitle: solution structure of the rrm_1 domain of ncl protein 97 c2fc8A_ not modelled 5.1 18 PDB header:rna binding protein Chain: A: PDB Molecule:ncl protein; PDBTitle: solution structure of the rrm_1 domain of ncl protein

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0