Secondary structure and disorder prediction

1

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10

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20

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30

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40

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50

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.

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.

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60

Sequence

M

S

L

P

S

I

P

S

F

V

L

S

G

L

L

L

I

C

L

P

F

S

S

F

A

S

A

T

T

S

H

I

S

F

S

Y

A

A

R

Q

R

M

Q

N

R

A

R

L

L

K

Q

Y

Q

T

H

L

K

K

Q

A

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

?

Disorder confidence

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70

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80

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90

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100

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110

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120

Sequence

S

Y

I

V

E

G

N

A

E

S

K

R

A

L

R

Q

H

N

R

E

Q

I

K

Q

H

P

E

W

F

P

A

P

L

K

A

S

D

R

R

W

Q

A

L

A

E

N

N

H

F

L

S

S

D

H

L

H

N

I

T

E

Secondary structure

SS confidence

Disorder

?

?

?

?

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?

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?

?

?

?

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?

?

Disorder confidence

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130

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140

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150

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160

.

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170

.

.

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.

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.

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.

180

Sequence

V

A

I

H

R

L

E

Q

Q

L

G

K

P

Y

V

W

G

G

T

R

P

D

K

G

F

D

C

S

G

L

V

F

Y

A

Y

N

K

I

L

E

A

K

L

P

R

T

A

N

E

M

Y

H

Y

R

R

A

T

I

V

A

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

?

?

?

Disorder confidence

.

.

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.

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.

190

.

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.

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200

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210

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.

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220

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.

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.

230

.

.

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.

.

.

.

.

.

240

Sequence

N

N

D

L

R

R

G

D

L

L

F

F

H

I

H

S

R

E

I

A

D

H

M

G

V

Y

L

G

D

G

Q

F

I

E

S

P

R

T

G

E

T

I

R

I

S

R

L

A

E

P

F

W

Q

D

H

F

L

G

A

R

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

Disorder confidence

.

.

.

.

.

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.

.

Sequence

R

I

L

T

E

E

T

I

L

Secondary structure

SS confidence

Disorder

?

?

?

?

?

?

Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2fg0 chain B Region: 93 - 245 Aligned: 147 Modelled: 153 Confidence: 100.0% Identity: 27% PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution Phyre2 PDB 3h41 chain A Region: 109 - 244 Aligned: 131 Modelled: 136 Confidence: 100.0% Identity: 31% PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution Phyre2 PDB 2k1g chain A Region: 118 - 245 Aligned: 122 Modelled: 128 Confidence: 100.0% Identity: 31% PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 Phyre2 PDB 3npf chain B Region: 119 - 246 Aligned: 120 Modelled: 128 Confidence: 100.0% Identity: 33% PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution Phyre2 PDB 2evr chain A domain 2 Region: 110 - 247 Aligned: 132 Modelled: 138 Confidence: 100.0% Identity: 30% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: NlpC/P60 Phyre2 PDB 2xiv chain A Region: 63 - 244 Aligned: 173 Modelled: 182 Confidence: 100.0% Identity: 24% PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis Phyre2 PDB 3pbi chain A Region: 95 - 244 Aligned: 141 Modelled: 141 Confidence: 100.0% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution Phyre2 PDB 3i86 chain A Region: 116 - 244 Aligned: 120 Modelled: 124 Confidence: 100.0% Identity: 33% PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 Phyre2 PDB 3gt2 chain A Region: 116 - 243 Aligned: 116 Modelled: 128 Confidence: 100.0% Identity: 33% PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c Phyre2 PDB 3m1u chain B Region: 119 - 244 Aligned: 108 Modelled: 126 Confidence: 99.9% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution Phyre2 PDB 2p1g chain A Region: 122 - 243 Aligned: 122 Modelled: 122 Confidence: 99.6% Identity: 22% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis Phyre2 PDB 2im9 chain A Region: 114 - 235 Aligned: 120 Modelled: 122 Confidence: 98.4% Identity: 19% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 Phyre2 PDB 2im9 chain A domain 1 Region: 114 - 235 Aligned: 120 Modelled: 122 Confidence: 98.4% Identity: 19% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: Lpg0564-like Phyre2 PDB 2kyt chain A Region: 179 - 237 Aligned: 56 Modelled: 59 Confidence: 98.2% Identity: 23% PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain Phyre2 PDB 3kw0 chain D Region: 181 - 228 Aligned: 47 Modelled: 48 Confidence: 97.8% Identity: 28% PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution Phyre2 PDB 2if6 chain A domain 1 Region: 113 - 166 Aligned: 54 Modelled: 54 Confidence: 97.4% Identity: 20% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: YiiX-like Phyre2 PDB 2io8 chain A domain 2 Region: 184 - 242 Aligned: 53 Modelled: 59 Confidence: 85.7% Identity: 11% Fold: Cysteine proteinases Superfamily: Cysteine proteinases Family: CHAP domain Phyre2 PDB 2k3a chain A Region: 137 - 244 Aligned: 95 Modelled: 108 Confidence: 84.3% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:chap domain protein; PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11 Phyre2 PDB 2ar1 chain A domain 1 Region: 181 - 206 Aligned: 26 Modelled: 26 Confidence: 80.0% Identity: 15% Fold: PUA domain-like Superfamily: PUA domain-like Family: Atu2648/PH1033-like Phyre2 PDB 2vpm chain B Region: 184 - 246 Aligned: 57 Modelled: 63 Confidence: 78.6% Identity: 11% PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase Phyre2 1 c2fg0B_ 2 c3h41A_ 3 c2k1gA_ 4 c3npfB_ 5 d2evra2 6 c2xivA_ 7 c3pbiA_ 8 c3i86A_ 9 c3gt2A_ 10 c3m1uB_ 11 c2p1gA_ 12 c2im9A_ 13 d2im9a1 14 c2kytA_ 15 c3kw0D_ 16 d2if6a1 17 d2io8a2 18 c2k3aA_ 19 d2ar1a1 20 c2vpmB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2fg0B_ 100.0 27 PDB header:hydrolase Chain: B: PDB Molecule:cog0791: cell wall-associated hydrolases (invasion- PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (npun_r0659) from nostoc punctiforme pcc 73102 at 1.793 a resolution 2 c3h41A_ 100.0 31 PDB header:hydrolase Chain: A: PDB Molecule:nlp/p60 family protein; PDBTitle: crystal structure of a nlpc/p60 family protein (bce_2878) from2 bacillus cereus atcc 10987 at 1.79 a resolution 3 c2k1gA_ 100.0 31 PDB header:lipoprotein Chain: A: PDB Molecule:lipoprotein spr; PDBTitle: solution nmr structure of lipoprotein spr from escherichia coli k12.2 northeast structural genomics target er541-37-162 4 c3npfB_ 100.0 33 PDB header:hydrolase Chain: B: PDB Molecule:putative dipeptidyl-peptidase vi; PDBTitle: crystal structure of a putative dipeptidyl-peptidase vi (bacova_00612)2 from bacteroides ovatus at 1.72 a resolution 5 d2evra2 100.0 30 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:NlpC/P60 6 c2xivA_ 100.0 24 PDB header:structural protein Chain: A: PDB Molecule:hypothetical invasion protein; PDBTitle: structure of rv1477, hypothetical invasion protein of2 mycobacterium tuberculosis 7 c3pbiA_ 100.0 29 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 8 c3i86A_ 100.0 33 PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium subspecies2 paratuberculosis antigen map1204 9 c3gt2A_ 100.0 33 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of the p60 domain from m. avium2 paratuberculosis antigen map1272c 10 c3m1uB_ 99.9 25 PDB header:hydrolase Chain: B: PDB Molecule:putative gamma-d-glutamyl-l-diamino acid endopeptidase; PDBTitle: crystal structure of a putative gamma-d-glutamyl-l-diamino acid2 endopeptidase (dvu_0896) from desulfovibrio vulgaris hildenborough at3 1.75 a resolution 11 c2p1gA_ 99.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative xylanase; PDBTitle: crystal structure of a putative xylanase from bacteroides fragilis 12 c2im9A_ 98.4 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of protein lpg0564 from legionella pneumophila str.2 philadelphia 1, pfam duf1460 13 d2im9a1 98.4 19 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Lpg0564-like 14 c2kytA_ 98.2 23 PDB header:hydrolase Chain: A: PDB Molecule:group xvi phospholipase a2; PDBTitle: solution struture of the h-rev107 n-terminal domain 15 c3kw0D_ 97.8 28 PDB header:hydrolase Chain: D: PDB Molecule:cysteine peptidase; PDBTitle: crystal structure of cysteine peptidase (np_982244.1) from bacillus2 cereus atcc 10987 at 2.50 a resolution 16 d2if6a1 97.4 20 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:YiiX-like 17 d2io8a2 85.7 11 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:CHAP domain 18 c2k3aA_ 84.3 15 PDB header:hydrolase Chain: A: PDB Molecule:chap domain protein; PDBTitle: nmr solution structure of staphylococcus saprophyticus chap2 (cysteine, histidine-dependent amidohydrolases/peptidases)3 domain protein. northeast structural genomics consortium4 target syr11 19 d2ar1a1 80.0 15 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 20 c2vpmB_ 78.6 11 PDB header:ligase Chain: B: PDB Molecule:trypanothione synthetase; PDBTitle: trypanothione synthetase 21 d2g2xa1 not modelled 78.6 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 22 c2ioaA_ not modelled 78.1 11 PDB header:ligase, hydrolase Chain: A: PDB Molecule:bifunctional glutathionylspermidine PDBTitle: e. coli bifunctional glutathionylspermidine2 synthetase/amidase incomplex with mg2+ and adp and3 phosphinate inhibitor 23 d2gbsa1 not modelled 77.7 28 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 24 c3eopB_ not modelled 76.1 15 PDB header:unknown function Chain: B: PDB Molecule:thymocyte nuclear protein 1; PDBTitle: crystal structure of the duf55 domain of human thymocyte nuclear2 protein 1 25 d2evea1 not modelled 75.5 23 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 26 c3nnlB_ not modelled 75.4 19 PDB header:biosynthetic protein Chain: B: PDB Molecule:cura; PDBTitle: halogenase domain from cura module (crystal form iii) 27 d1zcea1 not modelled 74.1 24 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 28 c3kopB_ not modelled 58.9 19 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein with a cyclophilin-like fold2 (yp_831253.1) from arthrobacter sp. fb24 at 1.90 a resolution 29 d2eyqa1 not modelled 50.3 26 Fold:SH3-like barrel Superfamily:CarD-like Family:CarD-like 30 d1jr7a_ not modelled 45.7 14 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Gab protein (hypothetical protein YgaT) 31 c2wbqA_ not modelled 43.4 33 PDB header:oxidoreductase Chain: A: PDB Molecule:l-arginine beta-hydroxylase; PDBTitle: crystal structure of vioc in complex with (2s,3s)-2 hydroxyarginine 32 c2nnzA_ not modelled 41.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein; PDBTitle: solution structure of the hypothetical protein af2241 from2 archaeoglobus fulgidus 33 d2ba0a2 not modelled 38.0 33 Fold:Barrel-sandwich hybrid Superfamily:Ribosomal L27 protein-like Family:ECR1 N-terminal domain-like 34 c2og5A_ not modelled 36.8 25 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxygenase; PDBTitle: crystal structure of asparagine oxygenase (asno) 35 d1o6aa_ not modelled 35.5 8 Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA) 36 d1ds1a_ not modelled 35.4 38 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Clavaminate synthase 37 d1vrba1 not modelled 33.4 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:Asparaginyl hydroxylase-like 38 d1o9ya_ not modelled 32.4 20 Fold:Surface presentation of antigens (SPOA) Superfamily:Surface presentation of antigens (SPOA) Family:Surface presentation of antigens (SPOA) 39 c3emrA_ not modelled 31.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:ectd; PDBTitle: crystal structure analysis of the ectoine hydroxylase ectd from2 salibacillus salexigens 40 d1otja_ not modelled 31.0 7 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 41 d1nx4a_ not modelled 30.3 29 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 42 d1wpga1 not modelled 30.3 16 Fold:Double-stranded beta-helix Superfamily:Calcium ATPase, transduction domain A Family:Calcium ATPase, transduction domain A 43 c3r1jB_ not modelled 29.0 14 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of alpha-ketoglutarate-dependent taurine dioxygenase2 from mycobacterium avium, native form 44 d1we3o_ not modelled 28.8 25 Fold:GroES-like Superfamily:GroES-like Family:GroES 45 c3eatX_ not modelled 28.5 21 PDB header:oxidoreductase Chain: X: PDB Molecule:pyoverdine biosynthesis protein pvcb; PDBTitle: crystal structure of the pvcb (pa2255) protein from2 pseudomonas aeruginosa 46 c3d79A_ not modelled 27.7 17 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein ph0734; PDBTitle: crystal structure of hypothetical protein ph0734.1 from2 hyperthermophilic archaea pyrococcus horikoshii ot3 47 c2xdvA_ not modelled 27.2 26 PDB header:nuclear protein Chain: A: PDB Molecule:myc-induced nuclear antigen; PDBTitle: crystal structure of the catalytic domain of flj14393 48 c2dbiA_ not modelled 26.6 22 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ybiu; PDBTitle: crystal structure of a hypothetical protein jw0805 from2 escherichia coli 49 c3pvjB_ not modelled 26.4 14 PDB header:oxidoreductase Chain: B: PDB Molecule:alpha-ketoglutarate-dependent taurine dioxygenase; PDBTitle: crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine2 dioxygenase from pseudomonas putida kt2440 50 d2csga1 not modelled 26.1 28 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:YbiU-like 51 d1oiha_ not modelled 26.1 15 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:TauD/TfdA-like 52 c3ms5A_ not modelled 25.3 21 PDB header:oxidoreductase Chain: A: PDB Molecule:gamma-butyrobetaine dioxygenase; PDBTitle: crystal structure of human gamma-butyrobetaine,2-oxoglutarate2 dioxygenase 1 (bbox1) 53 c3al6A_ not modelled 25.2 30 PDB header:unknown function Chain: A: PDB Molecule:jmjc domain-containing protein c2orf60; PDBTitle: crystal structure of human tyw5 54 c2opwA_ not modelled 25.1 35 PDB header:oxidoreductase Chain: A: PDB Molecule:phyhd1 protein; PDBTitle: crystal structure of human phytanoyl-coa dioxygenase phyhd1 (apo) 55 d1p3ha_ not modelled 24.5 20 Fold:GroES-like Superfamily:GroES-like Family:GroES 56 d2jfga2 not modelled 24.3 11 Fold:MurD-like peptide ligases, peptide-binding domain Superfamily:MurD-like peptide ligases, peptide-binding domain Family:MurCDEF C-terminal domain 57 c1yy3A_ not modelled 22.8 20 PDB header:isomerase Chain: A: PDB Molecule:s-adenosylmethionine:trna ribosyltransferase- PDBTitle: structure of s-adenosylmethionine:trna ribosyltransferase-2 isomerase (quea) 58 d1c0aa2 not modelled 22.5 40 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 59 c3b8eC_ not modelled 22.0 12 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:sodium/potassium-transporting atpase subunit PDBTitle: crystal structure of the sodium-potassium pump 60 d1l0wa2 not modelled 21.8 50 Fold:DCoH-like Superfamily:GAD domain-like Family:GAD domain 61 d1y0za_ not modelled 21.1 29 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:gamma-Butyrobetaine hydroxylase 62 c2eyqA_ not modelled 20.9 26 PDB header:hydrolase Chain: A: PDB Molecule:transcription-repair coupling factor; PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor 63 d2fcta1 not modelled 20.8 17 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 64 d1wida_ not modelled 20.8 22 Fold:DNA-binding pseudobarrel domain Superfamily:DNA-binding pseudobarrel domain Family:B3 DNA binding domain 65 c2hc8A_ not modelled 20.7 15 PDB header:transport protein Chain: A: PDB Molecule:cation-transporting atpase, p-type; PDBTitle: structure of the a. fulgidus copa a-domain 66 c3gjbA_ not modelled 18.4 30 PDB header:biosynthetic protein Chain: A: PDB Molecule:cytc3; PDBTitle: cytc3 with fe(ii) and alpha-ketoglutarate 67 d1yela1 not modelled 18.2 22 Fold:DNA-binding pseudobarrel domain Superfamily:DNA-binding pseudobarrel domain Family:B3 DNA binding domain 68 d1knwa1 not modelled 17.8 26 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 69 d2a1xa1 not modelled 17.6 28 Fold:Double-stranded beta-helix Superfamily:Clavaminate synthase-like Family:PhyH-like 70 d1vkya_ not modelled 17.3 36 Fold:QueA-like Superfamily:QueA-like Family:QueA-like 71 c2zxeA_ not modelled 17.1 12 PDB header:hydrolase/transport protein Chain: A: PDB Molecule:na, k-atpase alpha subunit; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 72 c3uyjA_ not modelled 16.9 26 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific demethylase 8; PDBTitle: crystal structure of jmjd5 catalytic core domain in complex with2 nickle and alpha-kg 73 c2kijA_ not modelled 16.5 25 PDB header:hydrolase Chain: A: PDB Molecule:copper-transporting atpase 1; PDBTitle: solution structure of the actuator domain of the copper-2 transporting atpase atp7a 74 d2z1ea2 not modelled 16.0 23 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 75 c2x35A_ not modelled 15.9 30 PDB header:transcription Chain: A: PDB Molecule:peregrin; PDBTitle: molecular basis of histone h3k36me3 recognition by the pwwp2 domain of brpf1. 76 c2rdsA_ not modelled 15.8 41 PDB header:oxidoreductase Chain: A: PDB Molecule:1-deoxypentalenic acid 11-beta hydroxylase; fe(ii)/alpha- PDBTitle: crystal structure of ptlh with fe/oxalylglycine and ent-1-2 deoxypentalenic acid bound 77 d1iyca_ not modelled 15.6 67 Fold:Invertebrate chitin-binding proteins Superfamily:Invertebrate chitin-binding proteins Family:Antifungal peptide scarabaecin 78 c3j09A_ not modelled 15.4 15 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 79 d1njjb1 not modelled 15.2 20 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 80 c3rfuC_ not modelled 14.7 20 PDB header:hydrolase, membrane protein Chain: C: PDB Molecule:copper efflux atpase; PDBTitle: crystal structure of a copper-transporting pib-type atpase 81 d1aono_ not modelled 14.1 18 Fold:GroES-like Superfamily:GroES-like Family:GroES 82 d2phla2 not modelled 13.7 14 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Germin/Seed storage 7S protein 83 d1wdia_ not modelled 13.7 43 Fold:QueA-like Superfamily:QueA-like Family:QueA-like 84 c2q1dX_ not modelled 13.7 17 PDB header:lyase Chain: X: PDB Molecule:2-keto-3-deoxy-d-arabinonate dehydratase; PDBTitle: 2-keto-3-deoxy-d-arabinonate dehydratase complexed with magnesium and2 2,5-dioxopentanoate 85 d1hkva1 not modelled 13.4 31 Fold:Domain of alpha and beta subunits of F1 ATP synthase-like Superfamily:Alanine racemase C-terminal domain-like Family:Eukaryotic ODC-like 86 c3ixzA_ not modelled 13.0 16 PDB header:hydrolase Chain: A: PDB Molecule:potassium-transporting atpase alpha; PDBTitle: pig gastric h+/k+-atpase complexed with aluminium fluoride 87 c1q7hA_ not modelled 13.0 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: structure of a conserved pua domain protein from thermoplasma2 acidophilum 88 c3j08A_ not modelled 12.8 15 PDB header:hydrolase, metal transport Chain: A: PDB Molecule:copper-exporting p-type atpase a; PDBTitle: high resolution helical reconstruction of the bacterial p-type atpase2 copper transporter copa 89 d2ey4a1 not modelled 12.6 17 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 90 d1gtta1 not modelled 12.5 16 Fold:FAH Superfamily:FAH Family:FAH 91 c2r32A_ not modelled 12.1 23 PDB header:immune system Chain: A: PDB Molecule:gcn4-pii/tumor necrosis factor ligand PDBTitle: crystal structure of human gitrl variant 92 d1hyoa2 not modelled 12.0 38 Fold:FAH Superfamily:FAH Family:FAH 93 c3r6oA_ not modelled 11.7 20 PDB header:isomerase Chain: A: PDB Molecule:2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; PDBTitle: crystal structure of a probable 2-hydroxyhepta-2,4-diene-1, 7-2 dioateisomerase from mycobacterium abscessus 94 d2zoda2 not modelled 11.5 21 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 95 d1s04a_ not modelled 11.0 21 Fold:PUA domain-like Superfamily:PUA domain-like Family:ProFAR isomerase associated domain 96 c3ibmB_ not modelled 10.9 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:cupin 2, conserved barrel domain protein; PDBTitle: crystal structure of cupin 2 domain-containing protein hhal_0468 from2 halorhodospira halophila 97 d2hd9a1 not modelled 10.9 21 Fold:PUA domain-like Superfamily:PUA domain-like Family:Atu2648/PH1033-like 98 d1bg6a1 not modelled 10.9 11 Fold:6-phosphogluconate dehydrogenase C-terminal domain-like Superfamily:6-phosphogluconate dehydrogenase C-terminal domain-like Family:N-(1-D-carboxylethyl)-L-norvaline dehydrogenase 99 d2apoa1 not modelled 10.7 13 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0