Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP25549
DateThu Jan 5 11:42:06 GMT 2012
Unique Job ID4748a1f0d18c62f9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1hdha_
Top template information
Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:Arylsulfatase
Confidence and coverage
Confidence:100.0% Coverage: 76%
419 residues ( 76% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MEFSFSPKRLVVAVAAALPLMASAADTPSTATARKGFAGYDHPNQYLVKPATTIADNMMP
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Disorder  ???????






????
?????????????????????
???????????







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   .........70.........80.........90.........100.........110.........120
Sequence  VMQHPAQDKETQQKLAELEKKTGKKPNVVVFLLDDVGWMDVGFNGGGVAVGNPTPDIDAV
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??????????????????????
























?









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   .........130.........140.........150.........160.........170.........180
Sequence  ASQGLILTSAYSQPSSSPTRATILTGQYSIHHGILMPPMYGQPGGLQGLTTLPQLLHDQG
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   .........190.........200.........210.........220.........230.........240
Sequence  YVTQAIGKWHMGENKESQPQNVGFDDFRGFNSVSDMYTEWRDVHVNPEVALSPDRSEYIK
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??






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   .........250.........260.........270.........280.........290.........300
Sequence  QLPFSKDDVHAVRGGEQQAIADITPKYMEDLDQRWMDYGVKFLDKMAKSDKPFFLYYGTR
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   .........310.........320.........330.........340.........350.........360
Sequence  GCHFDNYPNAKYAGSSPARTSYGDCMVEMNDVFANLYKTLEKNGQLDNTLIVFTSDNGPE
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???????








































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   .........370.........380.........390.........400.........410.........420
Sequence  AEVPPHGRTPFRGAKGSTWEGGVRVPTFVYWKGMIQPRKSDGIVDLADLFPTALDLAGHP
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   .........430.........440.........450.........460.........470.........480
Sequence  GAKVANLVPKTTFIDGVDQTSFFLGTNGQSNRKAEHYFLNGKLAAVRMDEFKYHVLIQQP
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?????????














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???
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   .........490.........500.........510.........520.........530.........540
Sequence  YAYTQSGYQGGFTGTVMQTAGSSVFNLYTDPQESDSIGVRHIPMGVPLQTEMHAYMEILK
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Disorder  ???
???????
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   .........550.
Sequence  KYPPRAQIKSD
Secondary structure 









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Disorder 


????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1hdh chain A

3D model

Region: 84 - 541
Aligned: 419
Modelled: 424
Confidence: 100.0%
Identity: 26%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: Arylsulfatase

Phyre2

PDB 1auk chain A

3D model

Region: 84 - 549
Aligned: 442
Modelled: 465
Confidence: 100.0%
Identity: 27%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: Arylsulfatase

Phyre2

PDB 1p49 chain A

3D model

Region: 82 - 547
Aligned: 453
Modelled: 463
Confidence: 100.0%
Identity: 26%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: Arylsulfatase

Phyre2

PDB 3ed4 chain A

3D model

Region: 85 - 541
Aligned: 406
Modelled: 416
Confidence: 100.0%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:arylsulfatase;
PDBTitle: crystal structure of putative arylsulfatase from escherichia coli

Phyre2

PDB 1fsu chain A

3D model

Region: 83 - 547
Aligned: 433
Modelled: 443
Confidence: 100.0%
Identity: 26%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: Arylsulfatase

Phyre2

PDB 2qzu chain A

3D model

Region: 80 - 541
Aligned: 414
Modelled: 424
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: A: PDB Molecule:putative sulfatase yidj;
PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123

Phyre2

PDB 2vqr chain A

3D model

Region: 85 - 545
Aligned: 417
Modelled: 430
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:putative sulfatase;
PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily

Phyre2

PDB 3b5q chain B

3D model

Region: 84 - 551
Aligned: 379
Modelled: 388
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase
Chain: B: PDB Molecule:putative sulfatase yidj;
PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution

Phyre2

PDB 3lxq chain B

3D model

Region: 66 - 545
Aligned: 379
Modelled: 403
Confidence: 100.0%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vp1736;
PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a

Phyre2

PDB 2w8d chain B

3D model

Region: 69 - 528
Aligned: 371
Modelled: 395
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2;
PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis

Phyre2

PDB 2w5t chain A

3D model

Region: 69 - 523
Aligned: 379
Modelled: 405
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid
PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas.

Phyre2

PDB 2zkt chain B

3D model

Region: 85 - 425
Aligned: 264
Modelled: 271
Confidence: 100.0%
Identity: 18%
PDB header:isomerase
Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate
PDBTitle: structure of ph0037 protein from pyrococcus horikoshii

Phyre2

PDB 3m8y chain C

3D model

Region: 84 - 443
Aligned: 317
Modelled: 335
Confidence: 100.0%
Identity: 15%
PDB header:isomerase
Chain: C: PDB Molecule:phosphopentomutase;
PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation

Phyre2

PDB 3q3q chain A

3D model

Region: 78 - 447
Aligned: 347
Modelled: 370
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:alkaline phosphatase;
PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1

Phyre2

PDB 1o98 chain A domain 2

3D model

Region: 85 - 440
Aligned: 272
Modelled: 311
Confidence: 100.0%
Identity: 19%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain

Phyre2

PDB 2gso chain B

3D model

Region: 85 - 444
Aligned: 273
Modelled: 300
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase;
PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate

Phyre2

PDB 2i09 chain A

3D model

Region: 83 - 443
Aligned: 323
Modelled: 344
Confidence: 100.0%
Identity: 16%
PDB header:isomerase
Chain: A: PDB Molecule:phosphopentomutase;
PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans

Phyre2

PDB 3szz chain A

3D model

Region: 82 - 414
Aligned: 290
Modelled: 290
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:phosphonoacetate hydrolase;
PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate

Phyre2

PDB 2i09 chain A domain 1

3D model

Region: 83 - 444
Aligned: 251
Modelled: 251
Confidence: 100.0%
Identity: 20%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: DeoB catalytic domain-like

Phyre2

PDB 1ei6 chain A

3D model

Region: 83 - 414
Aligned: 276
Modelled: 296
Confidence: 100.0%
Identity: 17%
Fold: Alkaline phosphatase-like
Superfamily: Alkaline phosphatase-like
Family: Phosphonoacetate hydrolase

Phyre2
1

d1hdha_
2

d1auka_
3

d1p49a_
4

c3ed4A_
5

d1fsua_
6

c2qzuA_
7

c2vqrA_
8

c3b5qB_
9

c3lxqB_
10

c2w8dB_
11

c2w5tA_
12

c2zktB_
13

c3m8yC_
14

c3q3qA_
15

d1o98a2
16

c2gsoB_
17

c2i09A_
18

c3szzA_
19

d2i09a1
20

d1ei6a_
21



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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1hdha_



100.0 26 Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:Arylsulfatase
2d1auka_



100.0 27 Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:Arylsulfatase
3d1p49a_



100.0 26 Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:Arylsulfatase
4c3ed4A_



100.0 26 PDB header:transferase
Chain: A: PDB Molecule:arylsulfatase;
PDBTitle: crystal structure of putative arylsulfatase from escherichia coli
5d1fsua_



100.0 26 Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:Arylsulfatase
6c2qzuA_



100.0 23 PDB header:hydrolase
Chain: A: PDB Molecule:putative sulfatase yidj;
PDBTitle: crystal structure of the putative sulfatase yidj from bacteroides2 fragilis. northeast structural genomics consortium target bfr123
7c2vqrA_



100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:putative sulfatase;
PDBTitle: crystal structure of a phosphonate monoester hydrolase2 from rhizobium leguminosarum: a new member of the3 alkaline phosphatase superfamily
8c3b5qB_



100.0 22 PDB header:hydrolase
Chain: B: PDB Molecule:putative sulfatase yidj;
PDBTitle: crystal structure of a putative sulfatase (np_810509.1)2 from bacteroides thetaiotaomicron vpi-5482 at 2.40 a3 resolution
9c3lxqB_



100.0 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein vp1736;
PDBTitle: the crystal structure of a protein in the alkaline2 phosphatase superfamily from vibrio parahaemolyticus to3 1.95a
10c2w8dB_



100.0 17 PDB header:transferase
Chain: B: PDB Molecule:processed glycerol phosphate lipoteichoic acid synthase 2;
PDBTitle: distinct and essential morphogenic functions for wall- and2 lipo-teichoic acids in bacillus subtilis
11c2w5tA_



100.0 17 PDB header:transferase
Chain: A: PDB Molecule:processed glycerol phosphate lipoteichoic acid
PDBTitle: structure-based mechanism of lipoteichoic acid synthesis by2 staphylococcus aureus ltas.
12c2zktB_



100.0 18 PDB header:isomerase
Chain: B: PDB Molecule:2,3-bisphosphoglycerate-independent phosphoglycerate
PDBTitle: structure of ph0037 protein from pyrococcus horikoshii
13c3m8yC_



100.0 15 PDB header:isomerase
Chain: C: PDB Molecule:phosphopentomutase;
PDBTitle: phosphopentomutase from bacillus cereus after glucose-1,6-bisphosphate2 activation
14c3q3qA_



100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:alkaline phosphatase;
PDBTitle: crystal structure of spap: an novel alkaline phosphatase from2 bacterium sphingomonas sp. strain bsar-1
15d1o98a2



100.0 19 Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
16c2gsoB_



100.0 21 PDB header:hydrolase
Chain: B: PDB Molecule:phosphodiesterase-nucleotide pyrophosphatase;
PDBTitle: structure of xac nucleotide2 pyrophosphatase/phosphodiesterase in complex with vanadate
17c2i09A_



100.0 16 PDB header:isomerase
Chain: A: PDB Molecule:phosphopentomutase;
PDBTitle: crystal structure of putative phosphopentomutase from streptococcus2 mutans
18c3szzA_



100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:phosphonoacetate hydrolase;
PDBTitle: crystal structure of phosphonoacetate hydrolase from sinorhizobium2 meliloti 1021 in complex with acetate
19d2i09a1



100.0 20 Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:DeoB catalytic domain-like
20d1ei6a_



100.0 17 Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:Phosphonoacetate hydrolase
21c2xrgA_



not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family
PDBTitle: crystal structure of autotaxin (enpp2) in complex with the2 ha155 boronic acid inhibitor
22c2xr9A_



not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:ectonucleotide pyrophosphatase/phosphodiesterase family
PDBTitle: crystal structure of autotaxin (enpp2)
23c1o98A_



not modelled 99.7 23 PDB header:isomerase
Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent
PDBTitle: 1.4a crystal structure of phosphoglycerate mutase from2 bacillus stearothermophilus complexed with3 2-phosphoglycerate
24c2d1gB_



not modelled 99.7 12 PDB header:hydrolase
Chain: B: PDB Molecule:acid phosphatase;
PDBTitle: structure of francisella tularensis acid phosphatase a (acpa) bound to2 orthovanadate
25c3igzB_



not modelled 99.6 12 PDB header:isomerase
Chain: B: PDB Molecule:cofactor-independent phosphoglycerate mutase;
PDBTitle: crystal structures of leishmania mexicana phosphoglycerate2 mutase at low cobalt concentration
26c2iucB_



not modelled 99.4 17 PDB header:hydrolase
Chain: B: PDB Molecule:alkaline phosphatase;
PDBTitle: structure of alkaline phosphatase from the antarctic2 bacterium tab5
27d1y6va1



not modelled 99.4 17 Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:Alkaline phosphatase
28c1ew2A_



not modelled 99.3 16 PDB header:hydrolase
Chain: A: PDB Molecule:phosphatase;
PDBTitle: crystal structure of a human phosphatase
29d1zeda1



not modelled 99.3 16 Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:Alkaline phosphatase
30d1k7ha_



not modelled 99.2 17 Fold:Alkaline phosphatase-like
Superfamily:Alkaline phosphatase-like
Family:Alkaline phosphatase
31c3a52A_



not modelled 99.1 16 PDB header:hydrolase
Chain: A: PDB Molecule:cold-active alkaline phosphatase;
PDBTitle: crystal structure of cold-active alkailne phosphatase from2 psychrophile shewanella sp.
32c2w0yB_



not modelled 99.0 19 PDB header:hydrolase
Chain: B: PDB Molecule:alkaline phosphatase;
PDBTitle: h.salinarum alkaline phosphatase
33c2x98A_



not modelled 99.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:alkaline phosphatase;
PDBTitle: h.salinarum alkaline phosphatase
34c3e2dB_



not modelled 98.8 17 PDB header:hydrolase
Chain: B: PDB Molecule:alkaline phosphatase;
PDBTitle: the 1.4 a crystal structure of the large and cold-active2 vibrio sp. alkaline phosphatase
35c3iddA_



not modelled 94.5 18 PDB header:isomerase
Chain: A: PDB Molecule:2,3-bisphosphoglycerate-independent
PDBTitle: cofactor-independent phosphoglycerate mutase from2 thermoplasma acidophilum dsm 1728
36d1b4ub_



not modelled 41.6 8 Fold:Phosphorylase/hydrolase-like
Superfamily:LigB-like
Family:LigB-like
37d1xo1a2



not modelled 34.1 19 Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
38c3oaaO_



not modelled 32.1 21 PDB header:hydrolase/transport protein
Chain: O: PDB Molecule:atp synthase gamma chain;
PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon
39d1okga1



not modelled 26.5 13 Fold:Rhodanese/Cell cycle control phosphatase
Superfamily:Rhodanese/Cell cycle control phosphatase
Family:Multidomain sulfurtransferase (rhodanese)
40d1skyb3



not modelled 23.1 36 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
41d1fx0a3



not modelled 23.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
42d1tfra2



not modelled 22.0 31 Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
43c2d0jD_



not modelled 21.4 17 PDB header:transferase
Chain: D: PDB Molecule:galactosylgalactosylxylosylprotein 3-beta-
PDBTitle: crystal structure of human glcat-s apo form
44d1l5oa_



not modelled 20.7 30 Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
45c2ihnA_



not modelled 19.1 35 PDB header:hydrolase/dna
Chain: A: PDB Molecule:ribonuclease h;
PDBTitle: co-crystal of bacteriophage t4 rnase h with a fork dna2 substrate
46d1fs0g_



not modelled 18.6 14 Fold:Pyruvate kinase C-terminal domain-like
Superfamily:ATP synthase (F1-ATPase), gamma subunit
Family:ATP synthase (F1-ATPase), gamma subunit
47c3dqzB_



not modelled 18.0 16 PDB header:lyase
Chain: B: PDB Molecule:alpha-hydroxynitrile lyase-like protein;
PDBTitle: structure of the hydroxynitrile lyase from arabidopsis2 thaliana
48c3a5dM_



not modelled 17.8 15 PDB header:hydrolase
Chain: M: PDB Molecule:v-type atp synthase beta chain;
PDBTitle: inter-subunit interaction and quaternary rearrangement2 defined by the central stalk of prokaryotic v1-atpase
49d2b8ea1



not modelled 17.4 23 Fold:HAD-like
Superfamily:HAD-like
Family:Meta-cation ATPase, catalytic domain P
50d1j33a_



not modelled 17.3 17 Fold:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Superfamily:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
Family:Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
51d1skye3



not modelled 17.2 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
52d1dc1a_



not modelled 17.0 20 Fold:Restriction endonuclease-like
Superfamily:Restriction endonuclease-like
Family:Restriction endonuclease BsobI
53d1mm0a_



not modelled 16.7 13 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Scorpion toxin-like
Family:Insect defensins
54d3cu0a1



not modelled 16.5 27 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:1,3-glucuronyltransferase
55c3anyB_



not modelled 16.2 19 PDB header:lyase
Chain: B: PDB Molecule:ethanolamine ammonia-lyase light chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with cn-cbl and (r)-2-amino-1-propanol
56c1okgA_



not modelled 16.1 13 PDB header:transferase
Chain: A: PDB Molecule:possible 3-mercaptopyruvate sulfurtransferase;
PDBTitle: 3-mercaptopyruvate sulfurtransferase from leishmania major
57d1cmwa2



not modelled 16.1 42 Fold:PIN domain-like
Superfamily:PIN domain-like
Family:5' to 3' exonuclease catalytic domain
58d2qalk1



not modelled 15.2 31 Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
59c3oaaC_



not modelled 15.0 30 PDB header:hydrolase/transport protein
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: structure of the e.coli f1-atp synthase inhibited by subunit epsilon
60d2cz4a1



not modelled 14.7 11 Fold:Ferredoxin-like
Superfamily:GlnB-like
Family:Prokaryotic signal transducing protein
61c2k23A_



not modelled 14.6 12 PDB header:transport protein
Chain: A: PDB Molecule:lipocalin 2;
PDBTitle: solution structure analysis of the rlcn2
62d1v82a_



not modelled 14.1 24 Fold:Nucleotide-diphospho-sugar transferases
Superfamily:Nucleotide-diphospho-sugar transferases
Family:1,3-glucuronyltransferase
63c3absD_



not modelled 14.1 19 PDB header:lyase
Chain: D: PDB Molecule:ethanolamine ammonia-lyase light chain;
PDBTitle: crystal structure of ethanolamine ammonia-lyase from escherichia coli2 complexed with adeninylpentylcobalamin and ethanolamine
64c3cagF_



not modelled 13.6 15 PDB header:dna binding protein
Chain: F: PDB Molecule:arginine repressor;
PDBTitle: crystal structure of the oligomerization domain hexamer of the2 arginine repressor protein from mycobacterium tuberculosis in complex3 with 9 arginines.
65d1szpb1



not modelled 13.3 21 Fold:SAM domain-like
Superfamily:Rad51 N-terminal domain-like
Family:DNA repair protein Rad51, N-terminal domain
66d1srva_



not modelled 13.1 18 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
67d2b6fa1



not modelled 13.0 12 Fold:ParB/Sulfiredoxin
Superfamily:ParB/Sulfiredoxin
Family:Sulfiredoxin-like
68c1w0jB_



not modelled 12.7 24 PDB header:hydrolase
Chain: B: PDB Molecule:atp synthase alpha chain heart isoform,
PDBTitle: beryllium fluoride inhibited bovine f1-atpase
69c3ereD_



not modelled 12.5 15 PDB header:dna binding protein/dna
Chain: D: PDB Molecule:arginine repressor;
PDBTitle: crystal structure of the arginine repressor protein from mycobacterium2 tuberculosis in complex with the dna operator
70c3olhA_



not modelled 12.5 12 PDB header:transferase
Chain: A: PDB Molecule:3-mercaptopyruvate sulfurtransferase;
PDBTitle: human 3-mercaptopyruvate sulfurtransferase
71d1b4ba_



not modelled 12.4 15 Fold:DCoH-like
Superfamily:C-terminal domain of arginine repressor
Family:C-terminal domain of arginine repressor
72c2w6jG_



not modelled 12.4 27 PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase subunit gamma, mitochondrial;
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 5.
73d2p5ma1



not modelled 12.3 15 Fold:DCoH-like
Superfamily:C-terminal domain of arginine repressor
Family:C-terminal domain of arginine repressor
74c3ippA_



not modelled 12.3 20 PDB header:transferase
Chain: A: PDB Molecule:putative thiosulfate sulfurtransferase ynje;
PDBTitle: crystal structure of sulfur-free ynje
75c3icgD_



not modelled 12.1 15 PDB header:hydrolase
Chain: D: PDB Molecule:endoglucanase d;
PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans
76c2qe7C_



not modelled 12.0 32 PDB header:hydrolase
Chain: C: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1
77c2r9vA_



not modelled 12.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha;
PDBTitle: crystal structure of atp synthase subunit alpha (tm1612) from2 thermotoga maritima at 2.10 a resolution
78c3k1tA_



not modelled 11.9 11 PDB header:ligase
Chain: A: PDB Molecule:glutamate--cysteine ligase gsha;
PDBTitle: crystal structure of putative gamma-glutamylcysteine synthetase2 (yp_546622.1) from methylobacillus flagellatus kt at 1.90 a3 resolution
79c3jviA_



not modelled 11.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:protein tyrosine phosphatase;
PDBTitle: product state mimic crystal structure of protein tyrosine phosphatase2 from entamoeba histolytica
80c1kmhA_



not modelled 11.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:atpase alpha subunit;
PDBTitle: crystal structure of spinach chloroplast f1-atpase2 complexed with tentoxin
81d1exsa_



not modelled 11.5 4 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
82c2pn1A_



not modelled 11.3 22 PDB header:ligase
Chain: A: PDB Molecule:carbamoylphosphate synthase large subunit;
PDBTitle: crystal structure of carbamoylphosphate synthase large subunit (split2 gene in mj) (zp_00538348.1) from exiguobacterium sp. 255-15 at 2.00 a3 resolution
83d1we3a2



not modelled 11.3 18 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
84d1gt1a_



not modelled 11.2 18 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
85d1oela2



not modelled 11.2 19 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
86d2uubk1



not modelled 11.1 23 Fold:Ribonuclease H-like motif
Superfamily:Translational machinery components
Family:Ribosomal protein L18 and S11
87d1dzka_



not modelled 11.0 11 Fold:Lipocalins
Superfamily:Lipocalins
Family:Retinol binding protein-like
88c2dajA_



not modelled 11.0 21 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kiaa0977 protein;
PDBTitle: solution structure of the novel identified ubiquitin-like2 domain in the human cobl-like 1 protein
89c2w6fA_



not modelled 10.7 24 PDB header:hydrolase
Chain: A: PDB Molecule:atp synthase subunit alpha heart isoform,
PDBTitle: low resolution structures of bovine mitochondrial f1-atpase2 during controlled dehydration: hydration state 2.
90c3bijC_



not modelled 10.7 11 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:uncharacterized protein gsu0716;
PDBTitle: crystal structure of protein gsu0716 from geobacter2 sulfurreducens. northeast structural genomics target gsr13
91c2c61A_



not modelled 10.5 15 PDB header:hydrolase
Chain: A: PDB Molecule:a-type atp synthase non-catalytic subunit b;
PDBTitle: crystal structure of the non-catalytic b subunit of a-type2 atpase from m. mazei go1
92d2jdia3



not modelled 10.5 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
93c2qe7G_



not modelled 10.2 56 PDB header:hydrolase
Chain: G: PDB Molecule:atp synthase subunit gamma;
PDBTitle: crystal structure of the f1-atpase from the thermoalkaliphilic2 bacterium bacillus sp. ta2.a1
94c3d4rE_



not modelled 10.1 23 PDB header:unknown function
Chain: E: PDB Molecule:domain of unknown function from the pfam-b_34464 family;
PDBTitle: crystal structure of a duf2118 family protein (mmp0046) from2 methanococcus maripaludis at 2.20 a resolution
95c2fa5B_



not modelled 10.1 15 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator marr/emrr family;
PDBTitle: the crystal structure of an unliganded multiple antibiotic-2 resistance repressor (marr) from xanthomonas campestris
96d1kida_



not modelled 10.0 16 Fold:The "swivelling" beta/beta/alpha domain
Superfamily:GroEL apical domain-like
Family:GroEL-like chaperone, apical domain
97c3e20C_



not modelled 9.9 16 PDB header:translation
Chain: C: PDB Molecule:eukaryotic peptide chain release factor subunit 1;
PDBTitle: crystal structure of s.pombe erf1/erf3 complex
98c3bbnK_



not modelled 9.9 29 PDB header:ribosome
Chain: K: PDB Molecule:ribosomal protein s11;
PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
99d1g8fa3



not modelled 9.9 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:ATP sulfurylase C-terminal domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0