Email l.a.kelley@imperial.ac.uk Description P45423 Date Thu Jan 5 12:02:36 GMT 2012 Unique Job ID 42fa58ed444ff121

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2vldA_ 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 2 d1w36b3 92.9 19 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Exodeoxyribonuclease V beta chain (RecB), C-terminal domain 3 c1w36E_ 91.9 19 PDB header:recombination Chain: E: PDB Molecule:exodeoxyribonuclease v beta chain; PDBTitle: recbcd:dna complex 4 d1az3a_ 56.3 14 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRV 5 d1a9xa1 54.2 27 Fold:Carbamoyl phosphate synthetase, large subunit connection domain Superfamily:Carbamoyl phosphate synthetase, large subunit connection domain Family:Carbamoyl phosphate synthetase, large subunit connection domain 6 d1vz0a1 41.9 33 Fold:DNA/RNA-binding 3-helical bundle Superfamily:KorB DNA-binding domain-like Family:KorB DNA-binding domain-like 7 d2btoa1 37.4 20 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 8 c3h1tA_ 36.4 21 PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 9 d1vhsa_ 34.3 28 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 10 c3h4rA_ 32.6 17 PDB header:hydrolase Chain: A: PDB Molecule:exodeoxyribonuclease 8; PDBTitle: crystal structure of e. coli rece exonuclease 11 c3ot2B_ 31.9 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution 12 c3ot2A_ 31.9 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a putative nuclease belonging to duf8202 (ava_3926) from anabaena variabilis atcc 29413 at 1.96 a resolution 13 c3njcA_ 29.6 27 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yslb protein; PDBTitle: crystal structure of the yslb protein from bacillus subtilis.2 northeast structural genomics consortium target sr460. 14 c3ga2A_ 29.5 22 PDB header:hydrolase Chain: A: PDB Molecule:endonuclease v; PDBTitle: crystal structure of the endonuclease_v (bsu36170) from2 bacillus subtilis, northeast structural genomics3 consortium target sr624 15 c3fovA_ 29.4 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0102 protein rpa0323; PDBTitle: crystal structure of protein rpa0323 of unknown function from2 rhodopseudomonas palustris 16 d1yioa2 27.6 20 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 17 d2k3ka1 26.0 27 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 18 d1m0da_ 25.1 17 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Endonuclease I (Holliday junction resolvase) 19 d1tuba1 22.8 20 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 20 d1w0ba_ 22.1 40 Fold:Spectrin repeat-like Superfamily:Alpha-hemoglobin stabilizing protein AHSP Family:Alpha-hemoglobin stabilizing protein AHSP 21 d1tubb1 not modelled 21.6 15 Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain 22 d1d2zb_ not modelled 21.4 26 Fold:DEATH domain Superfamily:DEATH domain Family:DEATH domain, DD 23 c3cueJ_ not modelled 21.4 16 PDB header:protein transport Chain: J: PDB Molecule:transport protein particle 22 kda subunit; PDBTitle: crystal structure of a trapp subassembly activating the rab2 ypt1p 24 c2jg6A_ not modelled 20.0 26 PDB header:hydrolase Chain: A: PDB Molecule:dna-3-methyladenine glycosidase; PDBTitle: crystal structure of a 3-methyladenine dna glycosylase i2 from staphylococcus aureus 25 d1sjqa_ not modelled 19.7 15 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 26 d1xmxa_ not modelled 18.8 10 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hypothetical protein VC1899 27 c2az1B_ not modelled 18.7 16 PDB header:transferase Chain: B: PDB Molecule:nucleoside diphosphate kinase; PDBTitle: structure of a halophilic nucleoside diphosphate kinase2 from halobacterium salinarum 28 c3edlA_ not modelled 18.2 20 PDB header:structural protein Chain: A: PDB Molecule:alpha-tubulin; PDBTitle: kinesin13-microtubule ring complex 29 d1z8ua1 not modelled 17.9 40 Fold:Spectrin repeat-like Superfamily:Alpha-hemoglobin stabilizing protein AHSP Family:Alpha-hemoglobin stabilizing protein AHSP 30 d1sx5a_ not modelled 17.7 14 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease EcoRV 31 c2jlmE_ not modelled 17.4 22 PDB header:transferase Chain: E: PDB Molecule:putative phosphinothricin n-acetyltransferase; PDBTitle: structure of a putative acetyltransferase (aciad1637) from2 acinetobacter baylyi adp1 32 c1s7fA_ not modelled 17.1 14 PDB header:transferase Chain: A: PDB Molecule:acetyl transferase; PDBTitle: riml- ribosomal l7/l12 alpha-n-protein acetyltransferase crystal form2 i (apo) 33 c2o37A_ not modelled 17.0 6 PDB header:chaperone Chain: A: PDB Molecule:protein sis1; PDBTitle: j-domain of sis1 protein, hsp40 co-chaperone from2 saccharomyces cerevisiae. 34 c2jh9A_ not modelled 16.8 23 PDB header:viral protein Chain: A: PDB Molecule:vp4 core protein; PDBTitle: the structure of bluetongue virus vp4 reveals a2 multifunctional rna-capping production-line 35 c2e5jA_ not modelled 16.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:methenyltetrahydrofolate synthetase domain PDBTitle: solution structure of rna binding domain in2 methenyltetrahydrofolate synthetase domain containing 36 c3cxjB_ not modelled 15.8 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from2 methanothermobacter thermautotrophicus 37 c3apqB_ not modelled 15.7 18 PDB header:oxidoreductase Chain: B: PDB Molecule:dnaj homolog subfamily c member 10; PDBTitle: crystal structure of j-trx1 fragment of erdj5 38 d1nkua_ not modelled 15.4 26 Fold:DNA-glycosylase Superfamily:DNA-glycosylase Family:3-Methyladenine DNA glycosylase I (Tag) 39 d1w25a1 not modelled 14.9 12 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 40 c1vbkA_ not modelled 14.7 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ph1313; PDBTitle: crystal structure of ph1313 from pyrococcus horikoshii ot3 41 d2di0a1 not modelled 14.6 33 Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:CUE domain 42 c2w4zB_ not modelled 14.4 38 PDB header:virus Chain: B: PDB Molecule:caulobacter bacteriophage 5; PDBTitle: caulobacter bacteriophage 5 43 c3efcA_ not modelled 14.2 15 PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein assembly factor yaet; PDBTitle: crystal structure of yaet periplasmic domain 44 d1whya_ not modelled 13.9 18 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 45 d1wdjb_ not modelled 13.9 16 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hypothetical protein TT1808 (TTHA1514) 46 c1m6vE_ not modelled 13.8 27 PDB header:ligase Chain: E: PDB Molecule:carbamoyl phosphate synthetase large chain; PDBTitle: crystal structure of the g359f (small subunit) point mutant of2 carbamoyl phosphate synthetase 47 d2gxba1 not modelled 13.1 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 48 d1kxpd3 not modelled 13.1 22 Fold:Serum albumin-like Superfamily:Serum albumin-like Family:Serum albumin-like 49 c3pgwP_ not modelled 13.0 27 PDB header:splicing/dna/rna Chain: P: PDB Molecule:u1-a; PDBTitle: crystal structure of human u1 snrnp 50 c1xaxA_ not modelled 13.0 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0054 protein hi0004; PDBTitle: nmr structure of hi0004, a putative essential gene product2 from haemophilus influenzae 51 d1qkka_ not modelled 12.8 14 Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related 52 d1kn0a_ not modelled 12.8 30 Fold:dsRBD-like Superfamily:dsRNA-binding domain-like Family:The homologous-pairing domain of Rad52 recombinase 53 c2qv0A_ not modelled 12.7 15 PDB header:transcription Chain: A: PDB Molecule:protein mrke; PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae 54 d1wdja_ not modelled 12.6 18 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hypothetical protein TT1808 (TTHA1514) 55 d2b7oa1 not modelled 12.6 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class-II DAHP synthetase 56 c3eplA_ not modelled 12.4 20 PDB header:transferase/rna Chain: A: PDB Molecule:trna isopentenyltransferase; PDBTitle: crystallographic snapshots of eukaryotic2 dimethylallyltransferase acting on trna: insight into trna3 recognition and reaction mechanism 57 d1xe1a_ not modelled 12.3 30 Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors 58 c1xe1A_ not modelled 12.3 30 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pf0907; PDBTitle: hypothetical protein from pyrococcus furiosus pfu-880080-001 59 c2i79B_ not modelled 12.3 17 PDB header:transferase Chain: B: PDB Molecule:acetyltransferase, gnat family; PDBTitle: the crystal structure of the acetyltransferase of gnat family from2 streptococcus pneumoniae 60 c3hdgE_ not modelled 12.2 12 PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes 61 d1gefa_ not modelled 12.0 31 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 62 c2kqxA_ not modelled 11.4 10 PDB header:chaperone binding protein Chain: A: PDB Molecule:curved dna-binding protein; PDBTitle: nmr structure of the j-domain (residues 2-72) in the2 escherichia coli cbpa 63 c3qpbB_ not modelled 11.4 38 PDB header:transferase Chain: B: PDB Molecule:uridine phosphorylase; PDBTitle: crystal structure of streptococcus pyogenes uridine phosphorylase2 reveals a subclass of the np-i superfamily 64 d2rnrb1 not modelled 11.4 22 Fold:PH domain-like barrel Superfamily:PH domain-like Family:TFIIH domain 65 c2pd0D_ not modelled 11.1 14 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein; PDBTitle: protein cgd2_2020 from cryptosporidium parvum 66 c2oziA_ not modelled 11.1 38 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein rpa4178; PDBTitle: structural genomics, the crystal structure of a putative2 protein rpa4178 from rhodopseudomonas palustris cga009 67 d1vbka2 not modelled 10.9 20 Fold:THUMP domain Superfamily:THUMP domain-like Family:THUMP domain 68 d1xm5a_ not modelled 10.7 10 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 69 d1mnta_ not modelled 10.6 12 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:Arc/Mnt-like phage repressors 70 d1fj7a_ not modelled 10.6 21 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 71 c3mg9A_ not modelled 10.5 30 PDB header:transferase/antibiotic Chain: A: PDB Molecule:teg12; PDBTitle: teg 12 binary structure complexed with the teicoplanin aglycone 72 c2dmxA_ not modelled 10.3 17 PDB header:chaperone Chain: A: PDB Molecule:dnaj homolog subfamily b member 8; PDBTitle: solution structure of the j domain of dnaj homolog2 subfamily b member 8 73 d1v4na_ not modelled 10.1 33 Fold:Phosphorylase/hydrolase-like Superfamily:Purine and uridine phosphorylases Family:Purine and uridine phosphorylases 74 c1yewC_ not modelled 10.1 29 PDB header:oxidoreductase, membrane protein Chain: C: PDB Molecule:particulate methane monooxygenase subunit c2; PDBTitle: crystal structure of particulate methane monooxygenase 75 d1a9nb_ not modelled 9.5 18 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 76 c3f6cB_ not modelled 9.4 4 PDB header:dna binding protein Chain: B: PDB Molecule:positive transcription regulator evga; PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli 77 d1tvia_ not modelled 9.3 12 Fold:Zincin-like Superfamily:Metalloproteases ("zincins"), catalytic domain Family:Predicted metal-dependent hydrolase 78 d2g9ha2 not modelled 9.0 27 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 79 c1wtaA_ not modelled 9.0 15 PDB header:transferase Chain: A: PDB Molecule:5'-methylthioadenosine phosphorylase; PDBTitle: crystal structure of 5'-deoxy-5'-methylthioadenosine from aeropyrum2 pernix (r32 form) 80 d1hh1a_ not modelled 9.0 26 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Hjc-like 81 c2btoA_ not modelled 8.7 20 PDB header:cytoskeletal protein Chain: A: PDB Molecule:tubulin btuba; PDBTitle: structure of btuba from prosthecobacter dejongeii 82 c2p1lF_ not modelled 8.6 31 PDB header:apoptosis Chain: F: PDB Molecule:beclin 1; PDBTitle: structure of the bcl-xl:beclin 1 complex 83 c1u9pA_ not modelled 8.6 28 PDB header:unknown function Chain: A: PDB Molecule:parc; PDBTitle: permuted single-chain arc 84 c3pbiA_ not modelled 8.5 20 PDB header:hydrolase Chain: A: PDB Molecule:invasion protein; PDBTitle: structure of the peptidoglycan hydrolase ripb (rv1478) from2 mycobacterium tuberculosis at 1.6 resolution 85 d1fl0a_ not modelled 8.5 13 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:Myf domain 86 d1yr0a1 not modelled 8.3 25 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:N-acetyl transferase, NAT 87 c1vkjA_ not modelled 8.2 29 PDB header:transferase Chain: A: PDB Molecule:heparan sulfate (glucosamine) 3-o- PDBTitle: crystal structure of heparan sulfate 3-o-sulfotransferase2 isoform 1 in the presence of pap 88 d1vkja_ not modelled 8.2 29 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:PAPS sulfotransferase 89 c2hjnA_ not modelled 8.2 17 PDB header:cell cycle Chain: A: PDB Molecule:maintenance of ploidy protein mob1; PDBTitle: structural and functional analysis of saccharomyces2 cerevisiae mob1 90 d2cq2a1 not modelled 8.1 12 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 91 d1wexa_ not modelled 8.1 27 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 92 d2ad9a1 not modelled 8.0 15 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 93 d1if1a_ not modelled 8.0 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Interferon regulatory factor 94 d1qgpa_ not modelled 7.9 21 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 95 d2cpda1 not modelled 7.8 27 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 96 c3k44D_ not modelled 7.7 24 PDB header:nucleic acid binding protein Chain: D: PDB Molecule:purine-rich binding protein-alpha, isoform b; PDBTitle: crystal structure of drosophila melanogaster pur-alpha 97 c3g16A_ not modelled 7.7 56 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein with cystatin-like fold; PDBTitle: crystal structure of protein of unknown function with cystatin-like2 fold (yp_001022489.1) from methylobium petroleophilum pm1 at 1.45 a3 resolution 98 c3d3qB_ not modelled 7.4 13 PDB header:transferase Chain: B: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: crystal structure of trna delta(2)-isopentenylpyrophosphate2 transferase (se0981) from staphylococcus epidermidis.3 northeast structural genomics consortium target ser100 99 d1kw3b1 not modelled 7.4 25 Fold:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Superfamily:Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Family:Extradiol dioxygenases