Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP15078
DateThu Jan 5 11:34:36 GMT 2012
Unique Job ID418770152a832dd9

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3giaA_
Top template information
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
Confidence and coverage
Confidence: 97.0% Coverage: 61%
425 residues ( 61% of your sequence) have been modelled with 97.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
532 residues ( 76%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCIYLIAYRFYGLYIAKNV
Secondary structure 
SS confidence 
Disorder  ??
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWL
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIALVACFMIMVIILAVLAM
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  IVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVFLIFAIISGGWVA
Secondary structure 
SS confidence 
Disorder 
?
?
????
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  ESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAVGILI
Secondary structure 
SS confidence 
Disorder  ?
?
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  MRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQA
Secondary structure 
SS confidence 
Disorder 
?
????
?
??
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  CFIGYGGMLMESFVAIMALVSACIIDPGVYFAMNSPMAVLAPAGTADVVASAAQVVSSWG
Secondary structure 
SS confidence 
Disorder 
?
??????????????????????
?
?
??
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  FSITPDTLNQIASEVGEQSIISRAGGAPTLAVGMAYILHGALGGMMDVAFWYHFAILFEA
Secondary structure 
SS confidence 
Disorder  ??
??????
?
?
????????
?
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  LFILTAVDAGTRAARFMLQDLLGVVSPGLKRTDSLPANLLATALCVLAWGYFLHQGVVDP
Secondary structure 
SS confidence 
Disorder 
?
????????
?
???????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  LGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQK
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  AFSPDAKVGFLAIANKFQAMIDSGNIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLA
Secondary structure 
SS confidence 
Disorder 
?????????
????
Disorder confidence 
 
   .........670.........680.........690.........700.
Sequence  LFSIKTALAALKDPKPTAKETPYEPMPENVEEIVAQAKGAH
Secondary structure 
SS confidence 
Disorder 
??????
?
??????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3gia chain A

3D model

Region: 84 - 681
Aligned: 425
Modelled: 425
Confidence: 97.0%
Identity: 16%
PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter

Phyre2

PDB 2jln chain A

3D model

Region: 57 - 690
Aligned: 449
Modelled: 473
Confidence: 96.9%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter

Phyre2

PDB 3lrc chain C

3D model

Region: 83 - 598
Aligned: 374
Modelled: 374
Confidence: 94.8%
Identity: 15%
PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)

Phyre2

PDB 2xq2 chain A

3D model

Region: 36 - 695
Aligned: 485
Modelled: 485
Confidence: 94.0%
Identity: 15%
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt

Phyre2

PDB 3dh4 chain A

3D model

Region: 83 - 686
Aligned: 461
Modelled: 461
Confidence: 87.2%
Identity: 13%
PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus

Phyre2

PDB 3a8q chain B

3D model

Region: 338 - 347
Aligned: 10
Modelled: 10
Confidence: 42.1%
Identity: 70%
PDB header:signaling protein
Chain: B: PDB Molecule:t-lymphoma invasion and metastasis-inducing
PDBTitle: low-resolution crystal structure of the tiam2 phccex domain

Phyre2

PDB 3a8n chain A

3D model

Region: 338 - 349
Aligned: 12
Modelled: 12
Confidence: 40.7%
Identity: 58%
PDB header:signaling protein
Chain: A: PDB Molecule:t-lymphoma invasion and metastasis-inducing
PDBTitle: crystal structure of the tiam1 phccex domain

Phyre2

PDB 3pl0 chain B

3D model

Region: 64 - 81
Aligned: 18
Modelled: 18
Confidence: 38.2%
Identity: 44%
PDB header:biosynthetic protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a bsma homolog (mpe_a2762) from methylobium2 petroleophilum pm1 at 1.91 a resolution

Phyre2

PDB 2axt chain J domain 1

3D model

Region: 42 - 55
Aligned: 14
Modelled: 14
Confidence: 27.7%
Identity: 36%
Fold: Single transmembrane helix
Superfamily: Photosystem II reaction center protein J, PsbJ
Family: PsbJ-like

Phyre2

PDB 2bfd chain B domain 2

3D model

Region: 351 - 375
Aligned: 25
Modelled: 25
Confidence: 27.3%
Identity: 4%
Fold: TK C-terminal domain-like
Superfamily: TK C-terminal domain-like
Family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain

Phyre2

PDB 1rp4 chain A

3D model

Region: 338 - 359
Aligned: 22
Modelled: 22
Confidence: 26.8%
Identity: 36%
Fold: ERO1-like
Superfamily: ERO1-like
Family: ERO1-like

Phyre2

PDB 3hd6 chain A

3D model

Region: 30 - 65
Aligned: 35
Modelled: 36
Confidence: 26.3%
Identity: 14%
PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg

Phyre2

PDB 2k9p chain A

3D model

Region: 558 - 591
Aligned: 34
Modelled: 34
Confidence: 26.3%
Identity: 18%
PDB header:membrane protein
Chain: A: PDB Molecule:pheromone alpha factor receptor;
PDBTitle: structure of tm1_tm2 in lppg micelles

Phyre2

PDB 1h5p chain A

3D model

Region: 139 - 153
Aligned: 15
Modelled: 15
Confidence: 24.8%
Identity: 33%
Fold: SAND domain-like
Superfamily: SAND domain-like
Family: SAND domain

Phyre2

PDB 2ktl chain A

3D model

Region: 62 - 86
Aligned: 25
Modelled: 25
Confidence: 24.5%
Identity: 16%
PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: structure of c-terminal domain from mttyrrs of a. nidulans

Phyre2

PDB 1qs0 chain B domain 2

3D model

Region: 351 - 376
Aligned: 26
Modelled: 26
Confidence: 24.1%
Identity: 15%
Fold: TK C-terminal domain-like
Superfamily: TK C-terminal domain-like
Family: Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain

Phyre2

PDB 2jek chain A domain 1

3D model

Region: 571 - 618
Aligned: 31
Modelled: 31
Confidence: 23.7%
Identity: 19%
Fold: Rv1873-like
Superfamily: Rv1873-like
Family: Rv1873-like

Phyre2

PDB 1oqj chain A

3D model

Region: 139 - 153
Aligned: 15
Modelled: 15
Confidence: 23.6%
Identity: 20%
Fold: SAND domain-like
Superfamily: SAND domain-like
Family: SAND domain

Phyre2

PDB 1s6l chain A domain 1

3D model

Region: 354 - 366
Aligned: 13
Modelled: 13
Confidence: 23.5%
Identity: 31%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: MerB N-terminal domain-like

Phyre2

PDB 3b9y chain A

3D model

Region: 30 - 65
Aligned: 35
Modelled: 36
Confidence: 23.3%
Identity: 11%
PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein

Phyre2
1
c3giaA_
2
c2jlnA_
3
c3lrcC_
4
c2xq2A_
5
c3dh4A_
6
c3a8qB_
7
c3a8nA_
8
c3pl0B_
9
d2axtj1
10
d2bfdb2
11
d1rp4a_
12
c3hd6A_
13
c2k9pA_
14
d1h5pa_
15
c2ktlA_
16
d1qs0b2
17
d2jeka1
18
d1oqja_
19
d1s6la1
20
c3b9yA_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3giaA_
97.0 16 PDB header:transport protein
Chain: A: PDB Molecule:uncharacterized protein mj0609;
PDBTitle: crystal structure of apct transporter
2c2jlnA_
96.9 15 PDB header:membrane protein
Chain: A: PDB Molecule:mhp1;
PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter
3c3lrcC_
94.8 15 PDB header:transport protein
Chain: C: PDB Molecule:arginine/agmatine antiporter;
PDBTitle: structure of e. coli adic (p1)
4c2xq2A_
94.0 15 PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: structure of the k294a mutant of vsglt
5c3dh4A_
87.2 13 PDB header:transport protein
Chain: A: PDB Molecule:sodium/glucose cotransporter;
PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus
6c3a8qB_
42.1 70 PDB header:signaling protein
Chain: B: PDB Molecule:t-lymphoma invasion and metastasis-inducing
PDBTitle: low-resolution crystal structure of the tiam2 phccex domain
7c3a8nA_
40.7 58 PDB header:signaling protein
Chain: A: PDB Molecule:t-lymphoma invasion and metastasis-inducing
PDBTitle: crystal structure of the tiam1 phccex domain
8c3pl0B_
38.2 44 PDB header:biosynthetic protein
Chain: B: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of a bsma homolog (mpe_a2762) from methylobium2 petroleophilum pm1 at 1.91 a resolution
9d2axtj1
27.7 36 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein J, PsbJ
Family:PsbJ-like
10d2bfdb2
27.3 4 Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
11d1rp4a_
26.8 36 Fold:ERO1-like
Superfamily:ERO1-like
Family:ERO1-like
12c3hd6A_
26.3 14 PDB header:membrane protein, transport protein
Chain: A: PDB Molecule:ammonium transporter rh type c;
PDBTitle: crystal structure of the human rhesus glycoprotein rhcg
13c2k9pA_
26.3 18 PDB header:membrane protein
Chain: A: PDB Molecule:pheromone alpha factor receptor;
PDBTitle: structure of tm1_tm2 in lppg micelles
14d1h5pa_
24.8 33 Fold:SAND domain-like
Superfamily:SAND domain-like
Family:SAND domain
15c2ktlA_
24.5 16 PDB header:ligase
Chain: A: PDB Molecule:tyrosyl-trna synthetase;
PDBTitle: structure of c-terminal domain from mttyrrs of a. nidulans
16d1qs0b2
24.1 15 Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
17d2jeka1
23.7 19 Fold:Rv1873-like
Superfamily:Rv1873-like
Family:Rv1873-like
18d1oqja_
23.6 20 Fold:SAND domain-like
Superfamily:SAND domain-like
Family:SAND domain
19d1s6la1
23.5 31 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:"Winged helix" DNA-binding domain
Family:MerB N-terminal domain-like
20c3b9yA_
23.3 11 PDB header:transport protein
Chain: A: PDB Molecule:ammonium transporter family rh-like protein;
PDBTitle: crystal structure of the nitrosomonas europaea rh protein
21d1afra_
not modelled 23.0 30 Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ribonucleotide reductase-like
22d1ufna_
not modelled 22.4 27 Fold:SAND domain-like
Superfamily:SAND domain-like
Family:SAND domain
23c3zy6A_
not modelled 22.4 21 PDB header:transferase
Chain: A: PDB Molecule:putative gdp-fucose protein o-fucosyltransferase 1;
PDBTitle: crystal structure of pofut1 in complex with gdp-fucose2 (crystal-form-ii)
24d1ik6a2
not modelled 21.2 12 Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
25d2awia1
not modelled 20.7 29 Fold:lambda repressor-like DNA-binding domains
Superfamily:lambda repressor-like DNA-binding domains
Family:PrgX N-terminal domain-like
26c3iymA_
not modelled 20.6 35 PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: backbone trace of the capsid protein dimer of a fungal partitivirus2 from electron cryomicroscopy and homology modeling
27c2qx5B_
not modelled 19.9 12 PDB header:transport protein
Chain: B: PDB Molecule:nucleoporin nic96;
PDBTitle: structure of nucleoporin nic96
28d2ozlb2
not modelled 19.5 10 Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
29c3ahrA_
not modelled 19.0 33 PDB header:oxidoreductase
Chain: A: PDB Molecule:ero1-like protein alpha;
PDBTitle: inactive human ero1
30c3pppA_
not modelled 18.8 11 PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein;
PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc
31d1w85b2
not modelled 17.5 28 Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
32d2fug61
not modelled 17.3 36 Fold:HydA/Nqo6-like
Superfamily:HydA/Nqo6-like
Family:Nq06-like
33d1i0za2
not modelled 17.2 21 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
34d1llda2
not modelled 17.0 29 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
35d2yrka1
not modelled 16.8 27 Fold:beta-beta-alpha zinc fingers
Superfamily:beta-beta-alpha zinc fingers
Family:HkH motif-containing C2H2 finger
36d9ldta2
not modelled 16.7 25 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
37c2lbfA_
not modelled 16.6 43 PDB header:ribosomal protein
Chain: A: PDB Molecule:60s acidic ribosomal protein p1;
PDBTitle: solution structure of the dimerization domain of human ribosomal2 protein p1/p2 heterodimer
38d1nekd_
not modelled 16.6 13 Fold:Heme-binding four-helical bundle
Superfamily:Fumarate reductase respiratory complex transmembrane subunits
Family:Succinate dehydrogenase/Fumarate reductase transmembrane subunits (SdhC/FrdC and SdhD/FrdD)
39c2k42A_
not modelled 16.4 15 PDB header:signaling protein
Chain: A: PDB Molecule:wiskott-aldrich syndrome protein;
PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
40c2elnA_
not modelled 16.2 50 PDB header:transcription
Chain: A: PDB Molecule:zinc finger protein 406;
PDBTitle: solution structure of the 11th c2h2 zinc finger of human2 zinc finger protein 406
41c3iz5t_
not modelled 15.8 43 PDB header:ribosome
Chain: T: PDB Molecule:60s ribosomal protein l19 (l19e);
PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
42c3nctC_
not modelled 15.8 22 PDB header:dna binding protein, chaperone
Chain: C: PDB Molecule:protein psib;
PDBTitle: x-ray crystal structure of the bacterial conjugation factor psib, a2 negative regulator of reca
43c2etjA_
not modelled 15.7 67 PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease hii;
PDBTitle: crystal structure of ribonuclease hii (ec 3.1.26.4) (rnase hii)2 (tm0915) from thermotoga maritima at 1.74 a resolution
44d2etja1
not modelled 15.7 67 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
45d1fvka_
not modelled 15.7 29 Fold:Thioredoxin fold
Superfamily:Thioredoxin-like
Family:DsbA-like
46d1i10a2
not modelled 15.7 25 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
47d1umdb2
not modelled 15.6 19 Fold:TK C-terminal domain-like
Superfamily:TK C-terminal domain-like
Family:Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
48c1x4rA_
not modelled 15.2 29 PDB header:apoptosis
Chain: A: PDB Molecule:parp14 protein;
PDBTitle: solution structure of wwe domain in parp14 protein
49d1oeya_
not modelled 15.0 20 Fold:beta-Grasp (ubiquitin-like)
Superfamily:CAD & PB1 domains
Family:PB1 domain
50d1d4va1
not modelled 14.9 38 Fold:TNF receptor-like
Superfamily:TNF receptor-like
Family:TNF receptor-like
51c2k1aA_
not modelled 14.8 45 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
52c3es4B_
not modelled 14.2 31 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein duf861 with a rmlc-like cupin fold;
PDBTitle: crystal structure of protein of unknown function (duf861) with a rmlc-2 like cupin fold (17741406) from agrobacterium tumefaciens str. c583 (dupont) at 1.64 a resolution
53c3o66A_
not modelled 14.2 11 PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/carnitine/choline abc transporter;
PDBTitle: crystal structure of glycine betaine/carnitine/choline abc transporter
54c1yewI_
not modelled 14.1 40 PDB header:oxidoreductase, membrane protein
Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit;
PDBTitle: crystal structure of particulate methane monooxygenase
55c2dnfA_
not modelled 14.0 13 PDB header:protein binding
Chain: A: PDB Molecule:doublecortin domain-containing protein 2;
PDBTitle: solution structure of rsgi ruh-062, a dcx domain from human
56d1hyha2
not modelled 14.0 13 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
57d5csma_
not modelled 14.0 20 Fold:Chorismate mutase II
Superfamily:Chorismate mutase II
Family:Allosteric chorismate mutase
58d1rxwa1
not modelled 13.9 20 Fold:SAM domain-like
Superfamily:5' to 3' exonuclease, C-terminal subdomain
Family:5' to 3' exonuclease, C-terminal subdomain
59c2j8lB_
not modelled 13.9 43 PDB header:hydrolase
Chain: B: PDB Molecule:coagulation factor xi;
PDBTitle: fxi apple 4 domain loop-out conformation
60d1i39a_
not modelled 13.7 56 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
61c1i3aA_
not modelled 13.7 56 PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease hii;
PDBTitle: rnase hii from archaeoglobus fulgidus with cobalt hexammine2 chloride
62c3k1qS_
not modelled 13.6 22 PDB header:virus
Chain: S: PDB Molecule:vp7: protector protein (outer shell);
PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics
63c2hx6A_
not modelled 13.6 33 PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease;
PDBTitle: solution structure analysis of the phage t42 endoribonuclease regb
64c2j8lA_
not modelled 13.6 43 PDB header:hydrolase
Chain: A: PDB Molecule:coagulation factor xi;
PDBTitle: fxi apple 4 domain loop-out conformation
65c2j8jA_
not modelled 13.6 43 PDB header:hydrolase
Chain: A: PDB Molecule:coagulation factor xi;
PDBTitle: solution structure of the a4 domain of blood coagulation2 factor xi
66d1k1ga_
not modelled 13.5 32 Fold:Eukaryotic type KH-domain (KH-domain type I)
Superfamily:Eukaryotic type KH-domain (KH-domain type I)
Family:Eukaryotic type KH-domain (KH-domain type I)
67d2ldxa2
not modelled 13.5 25 Fold:LDH C-terminal domain-like
Superfamily:LDH C-terminal domain-like
Family:Lactate & malate dehydrogenases, C-terminal domain
68c2kn6A_
not modelled 13.5 16 PDB header:apoptosis
Chain: A: PDB Molecule:apoptosis-associated speck-like protein containing a card;
PDBTitle: structure of full-length human asc (apoptosis-associated speck-like2 protein containing a card)
69d2j0111
not modelled 13.4 40 Fold:L28p-like
Superfamily:L28p-like
Family:Ribosomal protein L28
70d1ekea_
not modelled 13.4 67 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
71c2h8bB_
not modelled 13.4 50 PDB header:hormone/growth factor
Chain: B: PDB Molecule:insulin-like 3;
PDBTitle: solution structure of insl3
72d2axtc1
not modelled 13.3 18 Fold:Photosystem II antenna protein-like
Superfamily:Photosystem II antenna protein-like
Family:Photosystem II antenna protein-like
73c2axtc_
not modelled 13.3 18 PDB header:electron transport
Chain: C: PDB Molecule:photosystem ii cp43 protein;
PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus
74c2jrpA_
not modelled 13.2 44 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative cytoplasmic protein;
PDBTitle: solution nmr structure of yfgj from salmonella typhimurium2 modeled with two zn+2 bound, northeast structural genomics3 consortium target str86
75d2oara1
not modelled 13.2 14 Fold:Gated mechanosensitive channel
Superfamily:Gated mechanosensitive channel
Family:Gated mechanosensitive channel
76c1sazA_
not modelled 13.2 29 PDB header:transferase
Chain: A: PDB Molecule:probable butyrate kinase 2;
PDBTitle: membership in the askha superfamily: enzymological2 properties and crystal structure of butyrate kinase 2 from3 thermotoga maritima
77d2csba1
not modelled 13.1 71 Fold:SAM domain-like
Superfamily:RuvA domain 2-like
Family:Topoisomerase V repeat domain
78c2rejA_
not modelled 13.1 8 PDB header:choline-binding protein
Chain: A: PDB Molecule:putative glycine betaine abc transporter protein;
PDBTitle: abc-transporter choline binding protein in unliganded semi-2 closed conformation
79c2yguA_
not modelled 13.0 20 PDB header:allergen
Chain: A: PDB Molecule:venom allergen 2;
PDBTitle: crystal structure of fire ant venom allergen, sol i 2
80c2jo1A_
not modelled 13.0 2 PDB header:hydrolase regulator
Chain: A: PDB Molecule:phospholemman;
PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles
81d2axti1
not modelled 13.0 23 Fold:Single transmembrane helix
Superfamily:Photosystem II reaction center protein I, PsbI
Family:PsbI-like
82c3kioA_
not modelled 13.0 67 PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease h2 subunit a;
PDBTitle: mouse rnase h2 complex
83d1l7la_
not modelled 13.0 14 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:PA-IL, galactose-binding lectin 1
84d1m98a1
not modelled 13.0 26 Fold:Orange carotenoid protein, N-terminal domain
Superfamily:Orange carotenoid protein, N-terminal domain
Family:Orange carotenoid protein, N-terminal domain
85c3g9rF_
not modelled 12.9 36 PDB header:viral protein
Chain: F: PDB Molecule:fusion complex of hiv-1 envelope glycoprotein
PDBTitle: structure of the hiv-1 gp41 membrane-proximal ectodomain2 region in a putative prefusion conformation
86c2bbjB_
not modelled 12.9 15 PDB header:metal transport/membrane protein
Chain: B: PDB Molecule:divalent cation transport-related protein;
PDBTitle: crystal structure of the cora mg2+ transporter
87d1uaxa_
not modelled 12.8 67 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
88d1c9ka_
not modelled 12.8 55 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RecA protein-like (ATPase-domain)
89c2j8jB_
not modelled 12.8 43 PDB header:hydrolase
Chain: B: PDB Molecule:coagulation factor xi;
PDBTitle: solution structure of the a4 domain of blood coagulation2 factor xi
90d1uf0a_
not modelled 12.7 17 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Doublecortin (DC)
Family:Doublecortin (DC)
91c2p58C_
not modelled 12.7 45 PDB header:transport protein/chaperone
Chain: C: PDB Molecule:putative type iii secretion protein yscg;
PDBTitle: structure of the yersinia pestis type iii secretion system2 needle protein yscf in complex with its chaperones3 ysce/yscg
92c1rr7A_
not modelled 12.6 29 PDB header:transcription
Chain: A: PDB Molecule:middle operon regulator;
PDBTitle: crystal structure of the middle operon regulator protein of2 bacteriophage mu
93d1rr7a_
not modelled 12.6 29 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:Homeodomain-like
Family:Middle operon regulator, Mor
94d1j5pa4
not modelled 12.6 14 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
95c3s0xB_
not modelled 12.6 14 PDB header:hydrolase
Chain: B: PDB Molecule:peptidase a24b, flak domain protein;
PDBTitle: the crystal structure of gxgd membrane protease flak
96c2d0bA_
not modelled 12.6 44 PDB header:hydrolase
Chain: A: PDB Molecule:ribonuclease hiii;
PDBTitle: crystal structure of bst-rnase hiii in complex with mg2+
97c2jpmA_
not modelled 12.6 40 PDB header:antimicrobial protein
Chain: A: PDB Molecule:bacteriocin lactococcin-g subunit beta;
PDBTitle: lactococcin g-b in tfe
98d1io2a_
not modelled 12.5 67 Fold:Ribonuclease H-like motif
Superfamily:Ribonuclease H-like
Family:Ribonuclease H
99c2oarA_
not modelled 12.4 13 PDB header:membrane protein
Chain: A: PDB Molecule:large-conductance mechanosensitive channel;
PDBTitle: mechanosensitive channel of large conductance (mscl)

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0