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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c3iymA_

Fold library idPDB HeaderMoleculeTitle
c3iymA_PDB header: virusChain: A: PDB Molecule: capsid protein;PDBTitle: backbone trace of the capsid protein dimer of a fungal partitivirus2 from electron cryomicroscopy and homology modeling


Added to library: Sun Aug 29 02:23:27 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ASASKAAAFAQGGSSDPVPMPGKYPVVFSTGAGEPTRDQEFALPVHKAFPLFGSVSDKYRRNPRYAEFRA
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Known secondary structure (DSSP)


SS















TSSS
SSTT

SS

SS


STSSTTTTTTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence HSEFTDGVFGTHLAVSSLLRLAQQLVHAHVNMGLPLGDFAPLASSDVRIPSALASVVNQFGEFSSPSIGT
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Known secondary structure (DSSP) TT



STTTTT



TT

SSSS




TTTT



S
TTTTT
TT

ST
 .........150.........160.........170.........180.........190.........200.........210
Sequence RFLLRDFEHAVSRVVFLADQLWTNGNSHHIFARSWLPMSNNDGNFKTIVASRLLEFISAGDLSILPTVLE
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Known secondary structure (DSSP) TTT


SS

T
SS



GGGTTTSS
SSTTTBTTTTTSS



 .........220.........230.........240.........250.........260.........270.........280
Sequence DAVLSGEVPEAWEQVKDLLGDAPGVGQVDRRDRFDFLFKSYADVGQFTTAFTTQAASDVLTELGLPWNSP
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Known secondary structure (DSSP) SSS
TTTTTTSSSSS

TTTSTTGGGTTTSS


TT
GGGTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence SAGHLNWQYSTKQRFTFLADTWAKLSAAYSQFFELSSGLATRQSATGSHAQMVDLTSVEGVTVLKAALAL
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Known secondary structure (DSSP) TTTTTTTTTTGGGGTT








SSS







S

SSS

SS


 .........360.........370.........380.........390......
Sequence SAPEFSLAACFPPSCIFVGGLTRRVVVTTSLSVSQRATEFCQMDWR
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Known secondary structure (DSSP) SSSTTTTTSS

















SS

TTTS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
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