Email l.a.kelley@imperial.ac.uk Description P36767 Date Thu Jan 5 11:53:50 GMT 2012 Unique Job ID 3ca3dab71a26337a

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2owlA_ 100.0 96 PDB header:recombination Chain: A: PDB Molecule:recombination-associated protein rdgc; PDBTitle: crystal structure of e. coli rdgc 2 c2owyB_ 100.0 49 PDB header:dna binding protein Chain: B: PDB Molecule:recombination-associated protein rdgc; PDBTitle: the recombination-associated protein rdgc adopts a novel toroidal2 architecture for dna binding 3 d2cfua2 89.8 26 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Alkylsulfatase-like 4 c2cfuA_ 86.2 26 PDB header:hydrolase Chain: A: PDB Molecule:sdsa1; PDBTitle: crystal structure of sdsa1, an alkylsulfatase from2 pseudomonas aeruginosa, in complex with 1-decane-sulfonic-3 acid. 5 c2kmuA_ 63.1 11 PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent dna helicase q4; PDBTitle: recql4 amino-terminal domain 6 d1vmea2 31.3 11 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 7 c2l09A_ 27.5 16 PDB header:oxidoreductase Chain: A: PDB Molecule:asr4154 protein; PDBTitle: solution nmr structure of protein asr4154 from nostoc sp. pcc71202 northeast structural genomics consortium target id nsr143 8 c2kruA_ 27.4 8 PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: solution nmr structure of the pcp_red domain of light-2 independent protochlorophyllide reductase subunit b from3 chlorobium tepidum. northeast structural genomics4 consortium target ctr69a (casp target) 9 c1yd2A_ 26.0 9 PDB header:dna binding protein Chain: A: PDB Molecule:uvrabc system protein c; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease domain of2 uvrc from thermotoga maritima: point mutant y19f bound to the3 catalytic divalent cation 10 d1asua_ 21.7 12 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 11 c3nf9A_ 21.1 21 PDB header:hydrolase/hydrolase inhibitor Chain: A: PDB Molecule:integrase; PDBTitle: structural basis for a new mechanism of inhibition of hiv integrase2 identified by fragment screening and structure based design 12 d1ztca1 19.2 10 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:TM0894-like 13 c2ohiB_ 17.7 10 PDB header:oxidoreductase Chain: B: PDB Molecule:type a flavoprotein fpra; PDBTitle: crystal structure of coenzyme f420h2 oxidase (fpra), a diiron2 flavoprotein, reduced state 14 d1c6va_ 17.5 17 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 15 c3hleA_ 15.2 15 PDB header:transferase Chain: A: PDB Molecule:transesterase; PDBTitle: simvastatin synthase (lovd), from aspergillus terreus, s5 mutant, s76a2 mutant, complex with monacolin j acid 16 c1v1cA_ 14.4 50 PDB header:sh3-domain Chain: A: PDB Molecule:obscurin; PDBTitle: solution structure of the sh3 domain of obscurin 17 c3spuB_ 13.6 13 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase ndm-1; PDBTitle: apo ndm-1 crystal structure 18 d2aioa1 13.4 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 19 d2gmna1 13.3 29 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 20 c1yd6A_ 13.1 15 PDB header:dna binding protein Chain: A: PDB Molecule:uvrc; PDBTitle: crystal structure of the giy-yig n-terminal endonuclease2 domain of uvrc from bacillus caldotenax 21 d1hyva_ not modelled 13.1 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 22 d1cxqa_ not modelled 13.0 13 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 23 c2yz3B_ not modelled 11.8 30 PDB header:hydrolase Chain: B: PDB Molecule:metallo-beta-lactamase; PDBTitle: crystallographic investigation of inhibition mode of the2 vim-2 metallo-beta-lactamase from pseudomonas aeruginosa3 with mercaptocarboxylate inhibitor 24 d1ycga2 not modelled 11.0 14 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 25 d1e5da2 not modelled 10.9 8 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:ROO N-terminal domain-like 26 d1p5zb_ not modelled 10.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases 27 c3au5B_ not modelled 10.6 14 PDB header:motor protein Chain: B: PDB Molecule:myosin-x; PDBTitle: structure of the human myosin-x myth4-ferm cassette 28 c1vmeB_ not modelled 10.5 9 PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution 29 c2q9uB_ not modelled 10.5 10 PDB header:oxidoreductase Chain: B: PDB Molecule:a-type flavoprotein; PDBTitle: crystal structure of the flavodiiron protein from giardia2 intestinalis 30 c3lw8G_ not modelled 10.1 28 PDB header:signaling protein/rhoa-binding protein Chain: G: PDB Molecule:ipgb2; PDBTitle: shigella ipgb2 in complex with human rhoa, gdp and mg2+ (complex a) 31 d2cowa1 not modelled 10.1 10 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 32 c3ewgA_ not modelled 9.8 13 PDB header:transcription Chain: A: PDB Molecule:putative transcription antitermination protein nusg; PDBTitle: crystal structure of the n-terminal domain of nusg (ngn) from2 methanocaldococcus jannaschii 33 c1c0mA_ not modelled 9.8 13 PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase 34 d1whma_ not modelled 9.8 19 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 35 d1rw2a_ not modelled 9.6 11 Fold:alpha-alpha superhelix Superfamily:C-terminal domain of Ku80 Family:C-terminal domain of Ku80 36 c2d3o1_ not modelled 9.4 24 PDB header:ribosome Chain: 1: PDB Molecule:trigger factor; PDBTitle: structure of ribosome binding domain of the trigger factor2 on the 50s ribosomal subunit from d. radiodurans 37 d1ixda_ not modelled 9.0 33 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 38 c2b7fD_ not modelled 8.8 24 PDB header:hydrolase/hydrolase inhibitor Chain: D: PDB Molecule:htlv protease; PDBTitle: crystal structure of human t-cell leukemia virus protease, a novel2 target for anti-cancer design 39 c1ychD_ not modelled 8.6 15 PDB header:oxidoreductase Chain: D: PDB Molecule:nitric oxide reductase; PDBTitle: x-ray crystal structures of moorella thermoacetica fpra.2 novel diiron site structure and mechanistic insights into3 a scavenging nitric oxide reductase 40 c3s6eB_ not modelled 8.5 18 PDB header:rna binding protein Chain: B: PDB Molecule:rna-binding protein 39; PDBTitle: crystal structure of a rna binding motif protein 39 (rbm39) from mus2 musculus at 0.95 a resolution 41 d1x8ha_ not modelled 8.4 17 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 42 d1knwa2 not modelled 8.4 10 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 43 c3f9uA_ not modelled 8.2 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported cytochrome c biogenesis-related protein; PDBTitle: crystal structure of c-terminal domain of putative exported cytochrome2 c biogenesis-related protein from bacteroides fragilis 44 c2ja9A_ not modelled 8.1 20 PDB header:rna-binding protein Chain: A: PDB Molecule:exosome complex exonuclease rrp40; PDBTitle: structure of the n-terminal deletion of yeast exosome2 component rrp40 45 c3lvzA_ not modelled 8.1 29 PDB header:hydrolase Chain: A: PDB Molecule:blr6230 protein; PDBTitle: new refinement of the crystal structure of bjp-1, a subclass b32 metallo-beta-lactamase of bradyrhizobium japonicum 46 d2eyqa2 not modelled 7.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Tandem AAA-ATPase domain 47 d1tova_ not modelled 7.8 13 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 48 d1ul7a_ not modelled 7.8 25 Fold:TBP-like Superfamily:KA1-like Family:Kinase associated domain 1, KA1 49 c1bw8A_ not modelled 7.7 23 PDB header:peptide binding protein Chain: A: PDB Molecule:protein (mu2 adaptin subunit); PDBTitle: mu2 adaptin subunit (ap50) of ap2 adaptor (second domain),2 complexed with egfr internalization peptide fyralm 50 c3sd9B_ not modelled 7.5 21 PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase; PDBTitle: crystal structure of serratia fonticola sfh-i: source of the2 nucleophile in the catalytic mechanism of mono-zinc metallo-beta-3 lactamases 51 d1y88a1 not modelled 7.4 44 Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:Hypothetical protein AF1548, C-terminal domain 52 c2joiA_ not modelled 7.2 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein ta0095; PDBTitle: nmr solution structure of hypothetical protein ta0095 from2 thermoplasma acidophilum 53 d2cp2a1 not modelled 7.2 11 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 54 c1w26B_ not modelled 7.1 17 PDB header:chaperone Chain: B: PDB Molecule:trigger factor; PDBTitle: trigger factor in complex with the ribosome forms a2 molecular cradle for nascent proteins 55 d1tp6a_ not modelled 7.1 19 Fold:Cystatin-like Superfamily:NTF2-like Family:PA1314-like 56 d1exqa_ not modelled 7.0 20 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Retroviral integrase, catalytic domain 57 d1mk0a_ not modelled 6.7 25 Fold:GIY-YIG endonuclease Superfamily:GIY-YIG endonuclease Family:GIY-YIG endonuclease 58 d1xs8a_ not modelled 6.7 18 Fold:YggX-like Superfamily:YggX-like Family:YggX-like 59 c3p8bB_ not modelled 6.6 15 PDB header:transferase/transcription Chain: B: PDB Molecule:transcription antitermination protein nusg; PDBTitle: x-ray crystal structure of pyrococcus furiosus transcription2 elongation factor spt4/5 60 c1ex4A_ not modelled 6.5 21 PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain 61 c1tf2A_ not modelled 6.4 20 PDB header:protein transport Chain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis 62 c2qdoC_ not modelled 6.4 54 PDB header:photosynthesis Chain: C: PDB Molecule:nbla protein; PDBTitle: nbla protein from t. vulcanus 63 d2cp5a1 not modelled 6.3 11 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 64 d1whja_ not modelled 6.2 19 Fold:SH3-like barrel Superfamily:Cap-Gly domain Family:Cap-Gly domain 65 c2bh8B_ not modelled 6.1 20 PDB header:transcription Chain: B: PDB Molecule:1b11; PDBTitle: combinatorial protein 1b11 66 c1k8wA_ not modelled 6.1 12 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 67 c3rkjA_ not modelled 6.0 13 PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase ndm-1; PDBTitle: crystal structure of new delhi metallo-beta-lactamase-1 from2 klebsiella pnueumoniae 68 d1t11a2 not modelled 5.8 28 Fold:Ribosome binding domain-like Superfamily:Trigger factor ribosome-binding domain Family:Trigger factor ribosome-binding domain 69 d1znba_ not modelled 5.6 16 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:Zn metallo-beta-lactamase 70 d2q0ia1 not modelled 5.5 16 Fold:Metallo-hydrolase/oxidoreductase Superfamily:Metallo-hydrolase/oxidoreductase Family:PqsE-like 71 c2nn6G_ not modelled 5.5 20 PDB header:hydrolase/transferase Chain: G: PDB Molecule:exosome complex exonuclease rrp40; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 72 c3camB_ not modelled 5.4 25 PDB header:gene regulation Chain: B: PDB Molecule:cold-shock domain family protein; PDBTitle: crystal structure of the cold shock domain protein from neisseria2 meningitidis 73 c1vsqC_ not modelled 5.3 23 PDB header:transferase Chain: C: PDB Molecule:mannose-specific phosphotransferase enzyme iib PDBTitle: solution nmr structure of the productive complex between2 iiamannose and iibmannose of the mannose transporter of3 the e. coli phosphotransferase system 74 d2nn6g3 not modelled 5.2 21 Fold:Eukaryotic type KH-domain (KH-domain type I) Superfamily:Eukaryotic type KH-domain (KH-domain type I) Family:Eukaryotic type KH-domain (KH-domain type I) 75 c3nadB_ not modelled 5.2 36 PDB header:lyase Chain: B: PDB Molecule:ferulate decarboxylase; PDBTitle: crystal structure of phenolic acid decarboxylase from bacillus pumilus2 ui-670 76 c1yf2A_ not modelled 5.2 16 PDB header:hydrolase regulator Chain: A: PDB Molecule:type i restriction-modification enzyme, s subunit; PDBTitle: three-dimensional structure of dna sequence specificity (s) subunit of2 a type i restriction-modification enzyme and its functional3 implications