Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	W	E	Y	A	L	I	G	L	V	V	G	I	I	I	G	A	V	A	M	R	F	G	N	R	K	L	R	Q	Q	Q	A	L	Q	Y	E	L	E	K	N	K	A	E	L	D	E	Y	R	E	E	L	V	S	H	F	A	R	S	A
Secondary structure
SS confidence
Disorder		?	?																							?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	L	L	D	T	M	A	H	D	Y	R	Q	L	Y	Q	H	M	A	K	S	S	S	S	L	L	P	E	L	S	A	E	A	N	P	F	R	N	R	L	A	E	S	E	A	S	N	D	Q	A	P	V	Q	M	P	R	D	Y	S	E	G
Secondary structure
SS confidence
Disorder																									?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?					?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.
Sequence		A	S	G	L	L	R	T	G	A	K	R	D
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1o5h chain A Region: 5 - 71 Aligned: 66 Modelled: 67 Confidence: 84.6% Identity: 14% Fold: Methenyltetrahydrofolate cyclohydrolase-like Superfamily: Methenyltetrahydrofolate cyclohydrolase-like Family: Methenyltetrahydrofolate cyclohydrolase-like Phyre2 PDB 1tt9 chain B Region: 5 - 71 Aligned: 66 Modelled: 67 Confidence: 77.1% Identity: 12% PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer Phyre2 PDB 2asr chain A Region: 32 - 84 Aligned: 51 Modelled: 51 Confidence: 55.7% Identity: 8% Fold: Four-helical up-and-down bundle Superfamily: Aspartate receptor, ligand-binding domain Family: Aspartate receptor, ligand-binding domain Phyre2 PDB 1vlt chain A Region: 32 - 84 Aligned: 51 Modelled: 53 Confidence: 54.4% Identity: 16% Fold: Four-helical up-and-down bundle Superfamily: Aspartate receptor, ligand-binding domain Family: Aspartate receptor, ligand-binding domain Phyre2 PDB 1p68 chain A Region: 37 - 79 Aligned: 43 Modelled: 43 Confidence: 49.8% Identity: 14% PDB header:de novo protein Chain: A: PDB Molecule:de novo designed protein s-824; PDBTitle: solution structure of s-824, a de novo designed four helix2 bundle Phyre2 PDB 2d4y chain A Region: 30 - 90 Aligned: 61 Modelled: 61 Confidence: 49.7% Identity: 11% PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) Phyre2 PDB 1d2t chain A Region: 14 - 49 Aligned: 36 Modelled: 36 Confidence: 49.7% Identity: 25% Fold: Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily: Acid phosphatase/Vanadium-dependent haloperoxidase Family: Type 2 phosphatidic acid phosphatase, PAP2 Phyre2 PDB 2j0o chain A domain 1 Region: 53 - 84 Aligned: 32 Modelled: 32 Confidence: 48.2% Identity: 19% Fold: IpaD-like Superfamily: IpaD-like Family: IpaD-like Phyre2 PDB 2j0o chain A Region: 53 - 84 Aligned: 32 Modelled: 32 Confidence: 48.2% Identity: 19% PDB header:cell invasion Chain: A: PDB Molecule:invasin ipad; PDBTitle: shigella flexneri ipad Phyre2 PDB 2ym0 chain B Region: 52 - 84 Aligned: 33 Modelled: 33 Confidence: 46.3% Identity: 6% PDB header:cell invasion Chain: B: PDB Molecule:cell invasion protein sipd; PDBTitle: truncated sipd from salmonella typhimurium Phyre2 PDB 2d4u chain A Region: 32 - 84 Aligned: 52 Modelled: 53 Confidence: 43.5% Identity: 15% PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr Phyre2 PDB 1q90 chain M Region: 11 - 22 Aligned: 12 Modelled: 12 Confidence: 41.8% Identity: 50% Fold: Single transmembrane helix Superfamily: PetM subunit of the cytochrome b6f complex Family: PetM subunit of the cytochrome b6f complex Phyre2 PDB 1oqw chain A Region: 4 - 51 Aligned: 48 Modelled: 48 Confidence: 41.4% Identity: 13% Fold: Pili subunits Superfamily: Pili subunits Family: Pilin Phyre2 PDB 2lig chain A Region: 32 - 84 Aligned: 51 Modelled: 53 Confidence: 39.9% Identity: 16% Fold: Four-helical up-and-down bundle Superfamily: Aspartate receptor, ligand-binding domain Family: Aspartate receptor, ligand-binding domain Phyre2 PDB 2pil chain A Region: 4 - 59 Aligned: 50 Modelled: 56 Confidence: 37.6% Identity: 8% Fold: Pili subunits Superfamily: Pili subunits Family: Pilin Phyre2 PDB 3kdp chain G Region: 4 - 16 Aligned: 13 Modelled: 13 Confidence: 36.8% Identity: 38% PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump Phyre2 PDB 3kdp chain H Region: 4 - 16 Aligned: 13 Modelled: 13 Confidence: 36.8% Identity: 38% PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump Phyre2 PDB 2zxe chain G Region: 4 - 16 Aligned: 13 Modelled: 13 Confidence: 34.9% Identity: 46% PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state Phyre2 PDB 1gk6 chain B Region: 30 - 75 Aligned: 45 Modelled: 46 Confidence: 33.9% Identity: 16% PDB header:vimentin Chain: B: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b) Phyre2 PDB 3ipd chain B Region: 36 - 84 Aligned: 49 Modelled: 49 Confidence: 32.2% Identity: 14% PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 Phyre2 1 d1o5ha_ 2 c1tt9B_ 3 d2asra_ 4 d1vlta_ 5 c1p68A_ 6 c2d4yA_ 7 d1d2ta_ 8 d2j0oa1 9 c2j0oA_ 10 c2ym0B_ 11 c2d4uA_ 12 d1q90m_ 13 d1oqwa_ 14 d2liga_ 15 d2pila_ 16 c3kdpG_ 17 c3kdpH_ 18 c2zxeG_ 19 c1gk6B_ 20 c3ipdB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1o5ha_ 84.6 14 Fold:Methenyltetrahydrofolate cyclohydrolase-like Superfamily:Methenyltetrahydrofolate cyclohydrolase-like Family:Methenyltetrahydrofolate cyclohydrolase-like 2 c1tt9B_ 77.1 12 PDB header:transferase, lyase Chain: B: PDB Molecule:formimidoyltransferase-cyclodeaminase PDBTitle: structure of the bifunctional and golgi associated2 formiminotransferase cyclodeaminase octamer 3 d2asra_ 55.7 8 Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain 4 d1vlta_ 54.4 16 Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain 5 c1p68A_ 49.8 14 PDB header:de novo protein Chain: A: PDB Molecule:de novo designed protein s-824; PDBTitle: solution structure of s-824, a de novo designed four helix2 bundle 6 c2d4yA_ 49.7 11 PDB header:structural protein Chain: A: PDB Molecule:flagellar hook-associated protein 1; PDBTitle: crystal structure of a 49k fragment of hap1 (flgk) 7 d1d2ta_ 49.7 25 Fold:Acid phosphatase/Vanadium-dependent haloperoxidase Superfamily:Acid phosphatase/Vanadium-dependent haloperoxidase Family:Type 2 phosphatidic acid phosphatase, PAP2 8 d2j0oa1 48.2 19 Fold:IpaD-like Superfamily:IpaD-like Family:IpaD-like 9 c2j0oA_ 48.2 19 PDB header:cell invasion Chain: A: PDB Molecule:invasin ipad; PDBTitle: shigella flexneri ipad 10 c2ym0B_ 46.3 6 PDB header:cell invasion Chain: B: PDB Molecule:cell invasion protein sipd; PDBTitle: truncated sipd from salmonella typhimurium 11 c2d4uA_ 43.5 15 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr 12 d1q90m_ 41.8 50 Fold:Single transmembrane helix Superfamily:PetM subunit of the cytochrome b6f complex Family:PetM subunit of the cytochrome b6f complex 13 d1oqwa_ 41.4 13 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 14 d2liga_ 39.9 16 Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain 15 d2pila_ 37.6 8 Fold:Pili subunits Superfamily:Pili subunits Family:Pilin 16 c3kdpG_ 36.8 38 PDB header:hydrolase Chain: G: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 17 c3kdpH_ 36.8 38 PDB header:hydrolase Chain: H: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the sodium-potassium pump 18 c2zxeG_ 34.9 46 PDB header:hydrolase/transport protein Chain: G: PDB Molecule:phospholemman-like protein; PDBTitle: crystal structure of the sodium - potassium pump in the e2.2k+.pi2 state 19 c1gk6B_ 33.9 16 PDB header:vimentin Chain: B: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment linked to gcn4 leucine2 zipper (z2b) 20 c3ipdB_ 32.2 14 PDB header:exocytosis Chain: B: PDB Molecule:syntaxin-1a; PDBTitle: helical extension of the neuronal snare complex into the2 membrane, spacegroup i 21 21 21 21 c1nfoA_ not modelled 30.4 24 PDB header:lipid transport Chain: A: PDB Molecule:apolipoprotein e2; PDBTitle: apolipoprotein e2 (apoe2, d154a mutation) 22 c2jo1A_ not modelled 30.0 38 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 23 d1rhzb_ not modelled 28.3 20 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 24 c1avoD_ not modelled 27.1 11 PDB header:proteasome activator Chain: D: PDB Molecule:11s regulator; PDBTitle: proteasome activator reg(alpha) 25 c2jp3A_ not modelled 27.0 15 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 26 c2xv5A_ not modelled 26.9 19 PDB header:structural protein Chain: A: PDB Molecule:lamin-a/c; PDBTitle: human lamin a coil 2b fragment 27 c2cpbA_ not modelled 26.1 24 PDB header:viral protein Chain: A: PDB Molecule:m13 major coat protein; PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures 28 c1gk4A_ not modelled 25.9 26 PDB header:vimentin Chain: A: PDB Molecule:vimentin; PDBTitle: human vimentin coil 2b fragment (cys2) 29 c2k9yB_ not modelled 25.7 22 PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 30 c2gl2B_ not modelled 25.5 11 PDB header:cell adhesion Chain: B: PDB Molecule:adhesion a; PDBTitle: crystal structure of the tetra muntant (t66g,r67g,f68g,2 y69g) of bacterial adhesin fada 31 d2jaaa1 not modelled 25.1 19 Fold:IpaD-like Superfamily:IpaD-like Family:IpaD-like 32 c2p7nA_ not modelled 25.0 6 PDB header:cell invasion Chain: A: PDB Molecule:pathogenicity island 1 effector protein; PDBTitle: crystal structure of the pathogenicity island 1 effector2 protein from chromobacterium violaceum. northeast3 structural genomics consortium (nesgc) target cvr69. 33 c3n23E_ not modelled 24.0 38 PDB header:hydrolase Chain: E: PDB Molecule:na+/k+ atpase gamma subunit transcript variant a; PDBTitle: crystal structure of the high affinity complex between ouabain and the2 e2p form of the sodium-potassium pump 34 c2xdjF_ not modelled 23.9 20 PDB header:unknown function Chain: F: PDB Molecule:uncharacterized protein ybgf; PDBTitle: crystal structure of the n-terminal domain of e.coli ybgf 35 d1f6ga_ not modelled 23.8 17 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 36 c2k9yA_ not modelled 22.3 22 PDB header:transferase Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0 37 c2jwaA_ not modelled 19.3 21 PDB header:transferase Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-2; PDBTitle: erbb2 transmembrane segment dimer spatial structure 38 d2axtj1 not modelled 19.1 33 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein J, PsbJ Family:PsbJ-like 39 c1ei3E_ not modelled 18.9 16 PDB header: PDB COMPND: 40 c1ei3C_ not modelled 18.5 11 PDB header: PDB COMPND: 41 c1pi7A_ not modelled 17.3 53 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1 42 c2gohA_ not modelled 17.3 53 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles 43 c2gofA_ not modelled 17.3 53 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: three-dimensional structure of the trans-membrane domain of2 vpu from hiv-1 in aligned phospholipid bicelles 44 c1pi8A_ not modelled 17.3 53 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u" (vpu) from hiv-1 45 c1pjeA_ not modelled 17.3 53 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: structure of the channel-forming trans-membrane domain of2 virus protein "u"(vpu) from hiv-1 46 c2wvrB_ not modelled 16.7 24 PDB header:replication Chain: B: PDB Molecule:geminin; PDBTitle: human cdt1:geminin complex 47 c3cvfA_ not modelled 16.5 32 PDB header:signaling protein Chain: A: PDB Molecule:homer protein homolog 3; PDBTitle: crystal structure of the carboxy terminus of homer3 48 d2nwwa1 not modelled 16.4 39 Fold:Proton glutamate symport protein Superfamily:Proton glutamate symport protein Family:Proton glutamate symport protein 49 c3sokB_ not modelled 16.3 11 PDB header:cell adhesion Chain: B: PDB Molecule:fimbrial protein; PDBTitle: dichelobacter nodosus pilin fima 50 c3b5nF_ not modelled 15.8 16 PDB header:membrane protein Chain: F: PDB Molecule:protein sso1; PDBTitle: structure of the yeast plasma membrane snare complex 51 c2ww9B_ not modelled 15.5 25 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sss1; PDBTitle: cryo-em structure of the active yeast ssh1 complex bound to the2 yeast 80s ribosome 52 c1n7sB_ not modelled 15.4 14 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 1a; PDBTitle: high resolution structure of a truncated neuronal snare2 complex 53 c2qdqA_ not modelled 15.1 26 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: crystal structure of the talin dimerisation domain 54 c2wwbB_ not modelled 14.5 20 PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sec61 subunit gamma; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome 55 c3htuB_ not modelled 14.4 15 PDB header:protein transport Chain: B: PDB Molecule:vacuolar protein-sorting-associated protein 20; PDBTitle: crystal structure of the human vps25-vps20 subcomplex 56 c2ym9C_ not modelled 13.7 6 PDB header:cell invasion Chain: C: PDB Molecule:cell invasion protein sipd; PDBTitle: sipd from salmonella typhimurium 57 d1kpla_ not modelled 13.7 18 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 58 c2npsB_ not modelled 13.5 16 PDB header:transport protein Chain: B: PDB Molecule:syntaxin 13; PDBTitle: crystal structure of the early endosomal snare complex 59 d1k1fa_ not modelled 12.9 27 Fold:Bcr-Abl oncoprotein oligomerization domain Superfamily:Bcr-Abl oncoprotein oligomerization domain Family:Bcr-Abl oncoprotein oligomerization domain 60 c2jpxA_ not modelled 12.7 50 PDB header:viral protein Chain: A: PDB Molecule:vpu protein; PDBTitle: a18h vpu tm structure in lipid bilayers 61 c2x2vG_ not modelled 12.6 13 PDB header:membrane protein Chain: G: PDB Molecule:atp synthase subunit c; PDBTitle: structural basis of a novel proton-coordination type in an2 f1fo-atp synthase rotor ring 62 c3cveC_ not modelled 12.6 30 PDB header:signaling protein Chain: C: PDB Molecule:homer protein homolog 1; PDBTitle: crystal structure of the carboxy terminus of homer1 63 c2zt9E_ not modelled 12.3 18 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from nostoc sp. pcc2 7120 64 c2hg5D_ not modelled 12.0 22 PDB header:membrane protein Chain: D: PDB Molecule:kcsa channel; PDBTitle: cs+ complex of a k channel with an amide to ester substitution in the2 selectivity filter 65 c1sfcJ_ not modelled 11.9 11 PDB header:transport protein Chain: J: PDB Molecule:protein (syntaxin 1a); PDBTitle: neuronal synaptic fusion complex 66 c1lwuH_ not modelled 11.9 10 PDB header:blood clotting Chain: H: PDB Molecule:fibrinogen beta chain; PDBTitle: crystal structure of fragment d from lamprey fibrinogen complexed with2 the peptide gly-his-arg-pro-amide 67 c2akcC_ not modelled 11.8 25 PDB header:hydrolase Chain: C: PDB Molecule:class a nonspecific acid phosphatase phon; PDBTitle: crystal structure of tungstate complex of the phon protein2 from s. typhimurium 68 c2vv5D_ not modelled 11.5 15 PDB header:membrane protein Chain: D: PDB Molecule:small-conductance mechanosensitive channel; PDBTitle: the open structure of mscs 69 c2qsgX_ not modelled 11.1 21 PDB header:dna binding protein/dna Chain: X: PDB Molecule:uv excision repair protein rad23; PDBTitle: crystal structure of rad4-rad23 bound to a uv-damaged dna 70 d1x3zb1 not modelled 11.1 21 Fold:XPC-binding domain Superfamily:XPC-binding domain Family:XPC-binding domain 71 d1otsa_ not modelled 10.9 18 Fold:Clc chloride channel Superfamily:Clc chloride channel Family:Clc chloride channel 72 d1rh5b_ not modelled 10.7 20 Fold:Single transmembrane helix Superfamily:Preprotein translocase SecE subunit Family:Preprotein translocase SecE subunit 73 c1x8yA_ not modelled 10.7 18 PDB header:structural protein Chain: A: PDB Molecule:lamin a/c; PDBTitle: human lamin coil 2b 74 c1wu0A_ not modelled 10.6 24 PDB header:hydrolase Chain: A: PDB Molecule:atp synthase c chain; PDBTitle: solution structure of subunit c of f1fo-atp synthase from2 the thermophilic bacillus ps3 75 c2ks1B_ not modelled 10.6 44 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 76 c1deqO_ not modelled 10.5 12 PDB header: PDB COMPND: 77 c3ck6E_ not modelled 10.5 8 PDB header:structural protein Chain: E: PDB Molecule:putative membrane transport protein; PDBTitle: crystal structure of zntb cytoplasmic domain from vibrio2 parahaemolyticus rimd 2210633 78 c2hacA_ not modelled 10.2 18 PDB header:membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd3 zeta chain; PDBTitle: structure of zeta-zeta transmembrane dimer 79 d1zuja1 not modelled 9.4 19 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 80 d2r6gf2 not modelled 8.9 16 Fold:MetI-like Superfamily:MetI-like Family:MetI-like 81 c1fmhA_ not modelled 8.8 20 PDB header:transcription Chain: A: PDB Molecule:general control protein gcn4; PDBTitle: nmr solution structure of a designed heterodimeric leucine2 zipper 82 d1q90b_ not modelled 8.4 25 Fold:Heme-binding four-helical bundle Superfamily:Transmembrane di-heme cytochromes Family:Cytochrome b of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 83 c1iflA_ not modelled 8.4 28 PDB header:virus Chain: A: PDB Molecule:inovirus; PDBTitle: molecular models and structural comparisons of native and2 mutant class i filamentous bacteriophages ff (fd, f1, m13),3 if1 and ike 84 d1befa_ not modelled 8.3 50 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 85 c2oarA_ not modelled 8.2 20 PDB header:membrane protein Chain: A: PDB Molecule:large-conductance mechanosensitive channel; PDBTitle: mechanosensitive channel of large conductance (mscl) 86 c3jycA_ not modelled 8.1 22 PDB header:metal transport Chain: A: PDB Molecule:inward-rectifier k+ channel kir2.2; PDBTitle: crystal structure of the eukaryotic strong inward-rectifier2 k+ channel kir2.2 at 3.1 angstrom resolution 87 c3lkwA_ not modelled 8.0 30 PDB header:viral protein,hydrolase Chain: A: PDB Molecule:fusion protein of nonstructural protein 2b and PDBTitle: crystal structure of dengue virus 1 ns2b/ns3 protease active2 site mutant 88 c2kncB_ not modelled 7.7 18 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 89 d2ijob1 not modelled 7.5 40 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 90 d2fomb1 not modelled 7.5 50 Fold:Trypsin-like serine proteases Superfamily:Trypsin-like serine proteases Family:Viral proteases 91 d1q90l_ not modelled 7.5 24 Fold:Single transmembrane helix Superfamily:PetL subunit of the cytochrome b6f complex Family:PetL subunit of the cytochrome b6f complex 92 c1q90L_ not modelled 7.5 24 PDB header:photosynthesis Chain: L: PDB Molecule:cytochrome b6f complex subunit petl; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 93 d1c99a_ not modelled 7.4 21 Fold:Transmembrane helix hairpin Superfamily:F1F0 ATP synthase subunit C Family:F1F0 ATP synthase subunit C 94 d1v54b2 not modelled 7.4 14 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 95 d2axti1 not modelled 7.2 15 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 96 c2e74E_ not modelled 7.1 26 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex from m.laminosus 97 c1vf5E_ not modelled 7.1 26 PDB header:photosynthesis Chain: E: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 98 c1vf5R_ not modelled 7.1 26 PDB header:photosynthesis Chain: R: PDB Molecule:protein pet l; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 99 c2e75E_ not modelled 7.1 26 PDB header:photosynthesis Chain: E: PDB Molecule:cytochrome b6-f complex subunit 6; PDBTitle: crystal structure of the cytochrome b6f complex with 2-nonyl-4-2 hydroxyquinoline n-oxide (nqno) from m.laminosus

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0