Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP08395
DateThu Jan 5 11:01:27 GMT 2012
Unique Job ID3635732ca173ee7e

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3bezC_
Top template information
PDB header:hydrolase
Chain: C: PDB Molecule:protease 4;
PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals
Confidence and coverage
Confidence:100.0% Coverage: 77%
475 residues ( 77% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQVSGGDSKETASRGALL
Secondary structure 












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Disorder  ??








































?????????????



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   .........70.........80.........90.........100.........110.........120
Sequence  LDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDL
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Disorder 




???????????????????????????????























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   .........130.........140.........150.........160.........170.........180
Sequence  KNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQYYLASFANKIWLSPQGVVDLH
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Disorder 

?

















































?





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   .........190.........200.........210.........220.........230.........240
Sequence  GFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYL
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?

??




















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   .........250.........260.........270.........280.........290.........300
Sequence  NTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYALENKLVDALASSAEIEKALTKEFG
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???


















































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   .........310.........320.........330.........340.........350.........360
Sequence  WSKTDKNYRAISYYDYALKTPADTGDSIGVVFANGAIMDGEETQGNVGGDTTAAQIRDAR
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Disorder  ????????
?
?????????????















????????











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   .........370.........380.........390.........400.........410.........420
Sequence  LDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWISTPANY
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   .........430.........440.........450.........460.........470.........480
Sequence  IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQLS
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??

?











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   .........490.........500.........510.........520.........530.........540
Sequence  IENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVAKAAELA
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???








































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   .........550.........560.........570.........580.........590.........600
Sequence  KVKQWHLEYYVDEPTFFDKVMDNMSGSVRAMLPDAFQAMLPAPLASVASTVKSESDKLAA
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Disorder  ?









????





















?????
















?
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   .........610........
Sequence  FNDPQNRYAFCLTCANMR
Secondary structure 












SS confidence 

















Disorder 











??????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3bez chain C

3D model

Region: 55 - 550
Aligned: 475
Modelled: 475
Confidence: 100.0%
Identity: 99%
PDB header:hydrolase
Chain: C: PDB Molecule:protease 4;
PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals

Phyre2

PDB 3p2l chain D

3D model

Region: 330 - 532
Aligned: 164
Modelled: 173
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit;
PDBTitle: crystal structure of atp-dependent clp protease subunit p from2 francisella tularensis

Phyre2

PDB 1tg6 chain G

3D model

Region: 330 - 526
Aligned: 158
Modelled: 174
Confidence: 99.9%
Identity: 22%
PDB header:hydrolase
Chain: G: PDB Molecule:putative atp-dependent clp protease proteolytic subunit;
PDBTitle: crystallography and mutagenesis point to an essential role for the n-2 terminus of human mitochondrial clpp

Phyre2

PDB 2deo chain A

3D model

Region: 324 - 566
Aligned: 187
Modelled: 195
Confidence: 99.9%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:441aa long hypothetical nfed protein;
PDBTitle: 1510-n membrane protease specific for a stomatin homolog from2 pyrococcus horikoshii

Phyre2

PDB 3q7h chain M

3D model

Region: 330 - 526
Aligned: 158
Modelled: 168
Confidence: 99.9%
Identity: 22%
PDB header:hydrolase
Chain: M: PDB Molecule:atp-dependent clp protease proteolytic subunit;
PDBTitle: structure of the clpp subunit of the atp-dependent clp protease from2 coxiella burnetii

Phyre2

PDB 1tg6 chain A domain 1

3D model

Region: 330 - 526
Aligned: 158
Modelled: 174
Confidence: 99.9%
Identity: 22%
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Family: Clp protease, ClpP subunit

Phyre2

PDB 1yg6 chain A domain 1

3D model

Region: 330 - 528
Aligned: 160
Modelled: 175
Confidence: 99.9%
Identity: 25%
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Family: Clp protease, ClpP subunit

Phyre2

PDB 2cby chain A domain 1

3D model

Region: 330 - 526
Aligned: 148
Modelled: 164
Confidence: 99.9%
Identity: 26%
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Family: Clp protease, ClpP subunit

Phyre2

PDB 3kth chain D

3D model

Region: 330 - 531
Aligned: 163
Modelled: 177
Confidence: 99.9%
Identity: 21%
PDB header:hydrolase
Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit;
PDBTitle: structure of clpp from bacillus subtilis in orthorombic crystal form

Phyre2

PDB 2cby chain G

3D model

Region: 330 - 528
Aligned: 150
Modelled: 166
Confidence: 99.9%
Identity: 27%
PDB header:hydrolase
Chain: G: PDB Molecule:atp-dependent clp protease proteolytic subunit 1;
PDBTitle: crystal structure of the atp-dependent clp protease2 proteolytic subunit 1 (clpp1) from mycobacterium3 tuberculosis

Phyre2

PDB 1y7o chain A domain 1

3D model

Region: 330 - 528
Aligned: 148
Modelled: 162
Confidence: 99.9%
Identity: 22%
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Family: Clp protease, ClpP subunit

Phyre2

PDB 2f6i chain G

3D model

Region: 330 - 526
Aligned: 145
Modelled: 169
Confidence: 99.9%
Identity: 18%
PDB header:hydrolase
Chain: G: PDB Molecule:atp-dependent clp protease, putative;
PDBTitle: crystal structure of the clpp protease catalytic domain from2 plasmodium falciparum

Phyre2

PDB 2f6i chain A domain 1

3D model

Region: 330 - 528
Aligned: 151
Modelled: 162
Confidence: 99.9%
Identity: 19%
Fold: ClpP/crotonase
Superfamily: ClpP/crotonase
Family: Clp protease, ClpP subunit

Phyre2

PDB 1y7o chain E

3D model

Region: 330 - 528
Aligned: 148
Modelled: 161
Confidence: 99.9%
Identity: 24%
PDB header:hydrolase
Chain: E: PDB Molecule:atp-dependent clp protease proteolytic subunit;
PDBTitle: the structure of streptococcus pneumoniae a153p clpp

Phyre2

PDB 2ej5 chain B

3D model

Region: 350 - 540
Aligned: 142
Modelled: 142
Confidence: 99.2%
Identity: 20%
PDB header:lyase
Chain: B: PDB Molecule:enoyl-coa hydratase subunit ii;
PDBTitle: crystal structure of gk2038 protein (enoyl-coa hydratase subunit ii)2 from geobacillus kaustophilus

Phyre2

PDB 3he2 chain C

3D model

Region: 323 - 543
Aligned: 166
Modelled: 172
Confidence: 99.2%
Identity: 19%
PDB header:lyase
Chain: C: PDB Molecule:enoyl-coa hydratase echa6;
PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium2 tuberculosis

Phyre2

PDB 2q35 chain A

3D model

Region: 350 - 540
Aligned: 142
Modelled: 142
Confidence: 99.1%
Identity: 21%
PDB header:lyase
Chain: A: PDB Molecule:curf;
PDBTitle: crystal structure of the y82f variant of ech2 decarboxylase domain of2 curf from lyngbya majuscula

Phyre2

PDB 2x58 chain B

3D model

Region: 325 - 593
Aligned: 217
Modelled: 216
Confidence: 99.1%
Identity: 18%
PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxisomal bifunctional enzyme;
PDBTitle: the crystal structure of mfe1 liganded with coa

Phyre2

PDB 3pea chain D

3D model

Region: 326 - 540
Aligned: 163
Modelled: 166
Confidence: 99.1%
Identity: 19%
PDB header:isomerase
Chain: D: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of enoyl-coa hydratase from bacillus anthracis str.2 'ames ancestor'

Phyre2

PDB 3kqf chain C

3D model

Region: 350 - 540
Aligned: 142
Modelled: 142
Confidence: 99.1%
Identity: 23%
PDB header:isomerase
Chain: C: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: 1.8 angstrom resolution crystal structure of enoyl-coa hydratase from2 bacillus anthracis.

Phyre2

PDB 2f6q chain A

3D model

Region: 350 - 606
Aligned: 189
Modelled: 186
Confidence: 98.7%
Identity: 17%
PDB header:isomerase
Chain: A: PDB Molecule:peroxisomal 3,2-trans-enoyl-coa isomerase;
PDBTitle: the crystal structure of human peroxisomal delta3, delta2 enoyl coa2 isomerase (peci)

Phyre2
1

c3bezC_
2

c3p2lD_
3

c1tg6G_
4

c2deoA_
5

c3q7hM_
6

d1tg6a1
7

d1yg6a1
8

d2cbya1
9

c3kthD_
10

c2cbyG_
11

d1y7oa1
12

c2f6iG_
13

d2f6ia1
14

c1y7oE_
15

c2ej5B_
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c3he2C_
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c2q35A_
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c2x58B_
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c3peaD_
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c3kqfC_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3bezC_



100.0 99 PDB header:hydrolase
Chain: C: PDB Molecule:protease 4;
PDBTitle: crystal structure of escherichia coli signal peptide peptidase (sppa),2 semet crystals
2c3p2lD_



100.0 24 PDB header:hydrolase
Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit;
PDBTitle: crystal structure of atp-dependent clp protease subunit p from2 francisella tularensis
3c1tg6G_



99.9 22 PDB header:hydrolase
Chain: G: PDB Molecule:putative atp-dependent clp protease proteolytic subunit;
PDBTitle: crystallography and mutagenesis point to an essential role for the n-2 terminus of human mitochondrial clpp
4c2deoA_



99.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:441aa long hypothetical nfed protein;
PDBTitle: 1510-n membrane protease specific for a stomatin homolog from2 pyrococcus horikoshii
5c3q7hM_



99.9 22 PDB header:hydrolase
Chain: M: PDB Molecule:atp-dependent clp protease proteolytic subunit;
PDBTitle: structure of the clpp subunit of the atp-dependent clp protease from2 coxiella burnetii
6d1tg6a1



99.9 22 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Clp protease, ClpP subunit
7d1yg6a1



99.9 25 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Clp protease, ClpP subunit
8d2cbya1



99.9 26 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Clp protease, ClpP subunit
9c3kthD_



99.9 21 PDB header:hydrolase
Chain: D: PDB Molecule:atp-dependent clp protease proteolytic subunit;
PDBTitle: structure of clpp from bacillus subtilis in orthorombic crystal form
10c2cbyG_



99.9 27 PDB header:hydrolase
Chain: G: PDB Molecule:atp-dependent clp protease proteolytic subunit 1;
PDBTitle: crystal structure of the atp-dependent clp protease2 proteolytic subunit 1 (clpp1) from mycobacterium3 tuberculosis
11d1y7oa1



99.9 22 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Clp protease, ClpP subunit
12c2f6iG_



99.9 18 PDB header:hydrolase
Chain: G: PDB Molecule:atp-dependent clp protease, putative;
PDBTitle: crystal structure of the clpp protease catalytic domain from2 plasmodium falciparum
13d2f6ia1



99.9 19 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Clp protease, ClpP subunit
14c1y7oE_



99.9 24 PDB header:hydrolase
Chain: E: PDB Molecule:atp-dependent clp protease proteolytic subunit;
PDBTitle: the structure of streptococcus pneumoniae a153p clpp
15c2ej5B_



99.2 20 PDB header:lyase
Chain: B: PDB Molecule:enoyl-coa hydratase subunit ii;
PDBTitle: crystal structure of gk2038 protein (enoyl-coa hydratase subunit ii)2 from geobacillus kaustophilus
16c3he2C_



99.2 19 PDB header:lyase
Chain: C: PDB Molecule:enoyl-coa hydratase echa6;
PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium2 tuberculosis
17c2q35A_



99.1 21 PDB header:lyase
Chain: A: PDB Molecule:curf;
PDBTitle: crystal structure of the y82f variant of ech2 decarboxylase domain of2 curf from lyngbya majuscula
18c2x58B_



99.1 18 PDB header:oxidoreductase
Chain: B: PDB Molecule:peroxisomal bifunctional enzyme;
PDBTitle: the crystal structure of mfe1 liganded with coa
19c3peaD_



99.1 19 PDB header:isomerase
Chain: D: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of enoyl-coa hydratase from bacillus anthracis str.2 'ames ancestor'
20c3kqfC_



99.1 23 PDB header:isomerase
Chain: C: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: 1.8 angstrom resolution crystal structure of enoyl-coa hydratase from2 bacillus anthracis.
21c3rrvC_



not modelled 99.1 18 PDB header:isomerase
Chain: C: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase from2 mycobacterium paratuberculosis
22c3fduF_



not modelled 99.1 21 PDB header:isomerase
Chain: F: PDB Molecule:putative enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a putative enoyl-coa hydratase/isomerase from2 acinetobacter baumannii
23d1q52a_



not modelled 99.1 21 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
24c2iexA_



not modelled 99.0 21 PDB header:lyase
Chain: A: PDB Molecule:dihydroxynapthoic acid synthetase;
PDBTitle: crystal structure of dihydroxynapthoic acid synthetase (gk2873) from2 geobacillus kaustophilus hta426
25c3p5mB_



not modelled 99.0 23 PDB header:isomerase
Chain: B: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase from2 mycobacterium avium
26d1rjma_



not modelled 99.0 18 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
27c3lkeA_



not modelled 99.0 19 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydratase from bacillus2 halodurans
28c2ppyE_



not modelled 99.0 20 PDB header:lyase
Chain: E: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydrates (gk_1992) from geobacillus2 kaustophilus hta426
29c3sllC_



not modelled 99.0 21 PDB header:isomerase
Chain: C: PDB Molecule:probable enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus
30c2j5iF_



not modelled 99.0 21 PDB header:lyase
Chain: F: PDB Molecule:p-hydroxycinnamoyl coa hydratase/lyase;
PDBTitle: crystal structure of hydroxycinnamoyl-coa hydratase-lyase
31c3r6hA_



not modelled 99.0 23 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase, echa3;
PDBTitle: crystal structure of an enoyl-coa hydratase (echa3) from mycobacterium2 marinum
32c2hw5F_



not modelled 99.0 21 PDB header:lyase
Chain: F: PDB Molecule:enoyl-coa hydratase;
PDBTitle: the crystal structure of human enoyl-coenzyme a (coa) hydratase short2 chain 1, echs1
33d1xx4a_



not modelled 99.0 17 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
34d1sg4a1



not modelled 99.0 16 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
35c2qq3F_



not modelled 99.0 20 PDB header:lyase
Chain: F: PDB Molecule:enoyl-coa hydratase subunit i;
PDBTitle: crystal structure of enoyl-coa hydrates subunit i (gk_2039)2 other form from geobacillus kaustophilus hta426
36c2d3tB_



not modelled 99.0 25 PDB header:lyase, oxidoreductase/transferase
Chain: B: PDB Molecule:fatty oxidation complex alpha subunit;
PDBTitle: fatty acid beta-oxidation multienzyme complex from2 pseudomonas fragi, form v
37c2wtbA_



not modelled 99.0 21 PDB header:oxidoreductase
Chain: A: PDB Molecule:fatty acid multifunctional protein (atmfp2);
PDBTitle: arabidopsis thaliana multifuctional protein, mfp2
38d1wdka4



not modelled 98.9 27 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
39c3moyA_



not modelled 98.9 23 PDB header:lyase
Chain: A: PDB Molecule:probable enoyl-coa hydratase;
PDBTitle: crystal structure of probable enoyl-coa hydratase from mycobacterium2 smegmatis
40c3h81A_



not modelled 98.9 20 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase echa8;
PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium2 tuberculosis
41d1nzya_



not modelled 98.9 22 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
42c2w3pB_



not modelled 98.9 26 PDB header:lyase
Chain: B: PDB Molecule:benzoyl-coa-dihydrodiol lyase;
PDBTitle: boxc crystal structure
43d1hzda_



not modelled 98.9 27 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
44c3njbA_



not modelled 98.9 25 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium smegmatis,2 iodide soak
45c3l3sF_



not modelled 98.9 22 PDB header:isomerase
Chain: F: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of an enoyl-coa hydrotase/isomerase family2 protein from silicibacter pomeroyi
46c3i47A_



not modelled 98.9 23 PDB header:lyase
Chain: A: PDB Molecule:enoyl coa hydratase/isomerase (crotonase);
PDBTitle: crystal structure of putative enoyl coa hydratase/isomerase2 (crotonase) from legionella pneumophila subsp. pneumophila str.3 philadelphia 1
47c3rsiA_



not modelled 98.9 23 PDB header:isomerase
Chain: A: PDB Molecule:putative enoyl-coa hydratase/isomerase;
PDBTitle: the structure of a putative enoyl-coa hydratase/isomerase from2 mycobacterium abscessus atcc 19977 / dsm 44196
48c3oc7A_



not modelled 98.9 21 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of an enoyl-coa hydratase from mycobacterium avium
49c3hrxD_



not modelled 98.9 22 PDB header:lyase
Chain: D: PDB Molecule:probable enoyl-coa hydratase;
PDBTitle: crystal structure of phenylacetic acid degradation protein paag
50d1wz8a1



not modelled 98.9 20 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
51c3p85A_



not modelled 98.9 21 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure enoyl-coa hydratase from mycobacterium avium
52c1rjnC_



not modelled 98.9 19 PDB header:lyase
Chain: C: PDB Molecule:menb;
PDBTitle: the crystal structure of menb (rv0548c) from mycobacterium2 tuberculosis in complex with the coa portion of naphthoyl coa
53c2vx2D_



not modelled 98.9 19 PDB header:isomerase
Chain: D: PDB Molecule:enoyl-coa hydratase domain-containing protein 3;
PDBTitle: crystal structure of human enoyl coenzyme a hydratase2 domain-containing protein 3 (echdc3)
54d1uiya_



not modelled 98.9 26 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
55c3qxiA_



not modelled 98.9 20 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase echa1;
PDBTitle: crystal structure of enoyl-coa hydratase echa1 from mycobacterium2 marinum
56c2fbmB_



not modelled 98.9 22 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:y chromosome chromodomain protein 1, telomeric isoform b;
PDBTitle: acetyltransferase domain of cdy1
57d2a7ka1



not modelled 98.9 16 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
58c3h02F_



not modelled 98.8 20 PDB header:lyase
Chain: F: PDB Molecule:naphthoate synthase;
PDBTitle: 2.15 angstrom resolution crystal structure of naphthoate synthase from2 salmonella typhimurium.
59c3mybA_



not modelled 98.8 21 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydratase mycobacterium smegmatis
60c3q1tB_



not modelled 98.8 23 PDB header:lyase
Chain: B: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of enoyl-coa hydratase from mycobacterium avium
61c3g64A_



not modelled 98.8 27 PDB header:lyase
Chain: A: PDB Molecule:putative enoyl-coa hydratase;
PDBTitle: crystal structure of putative enoyl-coa hydratase from streptomyces2 coelicolor a3(2)
62c3omeE_



not modelled 98.8 24 PDB header:lyase
Chain: E: PDB Molecule:enoyl-coa hydratase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase from mycobacterium2 smegmatis
63c3qreA_



not modelled 98.8 20 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase, echa12_1;
PDBTitle: crystal structure of an enoyl-coa hydratase echa12_1 from2 mycobacterium marinum
64d2fw2a1



not modelled 98.8 20 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
65c3h0uB_



not modelled 98.8 12 PDB header:lyase
Chain: B: PDB Molecule:putative enoyl-coa hydratase;
PDBTitle: crystal structure of a putative enoyl-coa hydratase from2 streptomyces avermitilis
66c3trrA_



not modelled 98.8 23 PDB header:isomerase
Chain: A: PDB Molecule:probable enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus
67c3r0oA_



not modelled 98.8 21 PDB header:lyase
Chain: A: PDB Molecule:carnitinyl-coa dehydratase;
PDBTitle: crystal structure of carnitinyl-coa hydratase from mycobacterium avium
68c3ju1A_



not modelled 98.8 25 PDB header:lyase, isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of enoyl-coa hydratase/isomerase family protein
69c3qmjA_



not modelled 98.8 22 PDB header:lyase
Chain: A: PDB Molecule:enoyl-coa hydratase, echa8_6;
PDBTitle: crystal structure of enoyl-coa hydratase echa8_6 from mycobacterium2 marinum
70d1dcia_



not modelled 98.7 19 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
71d2f6qa1



not modelled 98.7 17 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
72c3isaA_



not modelled 98.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:putative enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of putative enoyl-coa hydratase/isomerase from2 bordetella parapertussis
73c3hinA_



not modelled 98.7 22 PDB header:lyase
Chain: A: PDB Molecule:putative 3-hydroxybutyryl-coa dehydratase;
PDBTitle: crystal structure of putative enoyl-coa hydratase from2 rhodopseudomonas palustris cga009
74c3qxzA_



not modelled 98.7 19 PDB header:lyase,isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus
75d1mj3a_



not modelled 98.7 23 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
76c2j5gL_



not modelled 98.7 16 PDB header:hydrolase
Chain: L: PDB Molecule:alr4455 protein;
PDBTitle: the native structure of a beta-diketone hydrolase from the2 cyanobacterium anabaena sp. pcc 7120
77c2f6qA_



98.7 17 PDB header:isomerase
Chain: A: PDB Molecule:peroxisomal 3,2-trans-enoyl-coa isomerase;
PDBTitle: the crystal structure of human peroxisomal delta3, delta2 enoyl coa2 isomerase (peci)
78c3gkbA_



not modelled 98.6 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative enoyl-coa hydratase;
PDBTitle: crystal structure of a putative enoyl-coa hydratase from streptomyces2 avermitilis
79d1szoa_



not modelled 98.6 22 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
80c3swxB_



not modelled 98.6 20 PDB header:isomerase
Chain: B: PDB Molecule:probable enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of a probable enoyl-coa hydratase/isomerase from2 mycobacterium abscessus
81d1pjha_



not modelled 98.6 16 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
82c3ot6A_



not modelled 98.6 16 PDB header:isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase family protein;
PDBTitle: crystal structure of an enoyl-coa hydratase/isomerase family protein2 from psudomonas syringae
83c2pg8C_



not modelled 98.6 23 PDB header:ligand binding protein
Chain: C: PDB Molecule:dpgc;
PDBTitle: crystal structure of r254k mutanat of dpgc with bound substrate analog
84d1ef8a_



not modelled 98.6 14 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Crotonase-like
85c1on3E_



not modelled 98.5 20 PDB header:transferase
Chain: E: PDB Molecule:methylmalonyl-coa carboxyltransferase 12s
PDBTitle: transcarboxylase 12s crystal structure: hexamer assembly2 and substrate binding to a multienzyme core (with3 methylmalonyl-coenzyme a and methylmalonic acid bound)
86c3bptA_



not modelled 98.5 19 PDB header:hydrolase
Chain: A: PDB Molecule:3-hydroxyisobutyryl-coa hydrolase;
PDBTitle: crystal structure of human beta-hydroxyisobutyryl-coa hydrolase in2 complex with quercetin
87c3hp0B_



not modelled 98.5 14 PDB header:lyase
Chain: B: PDB Molecule:putative polyketide biosynthesis enoyl-coa
PDBTitle: crystal structure of a putative polyketide biosynthesis2 enoyl-coa hydratase (pksh) from bacillus subtilis
88c3laoA_



not modelled 98.5 21 PDB header:lyase, isomerase
Chain: A: PDB Molecule:enoyl-coa hydratase/isomerase;
PDBTitle: crystal structure of enoyl-coa hydratase from pseudomonas2 aeruginosa pa01
89c3u9rB_



not modelled 98.5 19 PDB header:ligase
Chain: B: PDB Molecule:methylcrotonyl-coa carboxylase, beta-subunit;
PDBTitle: crystal structure of p. aeruginosa 3-methylcrotonyl-coa carboxylase2 (mcc), beta subunit
90c3m6nA_



not modelled 98.4 17 PDB header:lyase
Chain: A: PDB Molecule:rpff protein;
PDBTitle: crystal structure of rpff
91c3qkaB_



not modelled 98.4 25 PDB header:lyase
Chain: B: PDB Molecule:enoyl-coa hydratase, echa5;
PDBTitle: crystal structure of enoyl-coa hydratase echa5 from mycobacterium2 marinum
92c3n6rF_



not modelled 98.4 18 PDB header:ligase
Chain: F: PDB Molecule:propionyl-coa carboxylase, beta subunit;
PDBTitle: crystal structure of the holoenzyme of propionyl-coa carboxylase (pcc)
93c1x0uB_



not modelled 98.3 19 PDB header:lyase
Chain: B: PDB Molecule:hypothetical methylmalonyl-coa decarboxylase alpha subunit;
PDBTitle: crystal structure of the carboxyl transferase subunit of putative pcc2 of sulfolobus tokodaii
94c2f9iC_



not modelled 98.3 23 PDB header:transferase
Chain: C: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl
PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus
95c1vrgE_



not modelled 98.2 21 PDB header:ligase
Chain: E: PDB Molecule:propionyl-coa carboxylase, beta subunit;
PDBTitle: crystal structure of propionyl-coa carboxylase, beta subunit (tm0716)2 from thermotoga maritima at 2.30 a resolution
96c1xnwD_



not modelled 98.1 17 PDB header:ligase
Chain: D: PDB Molecule:propionyl-coa carboxylase complex b subunit;
PDBTitle: acyl-coa carboxylase beta subunit from s. coelicolor (pccb),2 apo form #2, mutant d422i
97c2a7sD_



not modelled 98.1 19 PDB header:ligase
Chain: D: PDB Molecule:probable propionyl-coa carboxylase beta chain 5;
PDBTitle: crystal structure of the acyl-coa carboxylase, accd5, from2 mycobacterium tuberculosis
98d2f9ya1



not modelled 98.1 22 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
99c3glmD_



not modelled 97.9 15 PDB header:lyase
Chain: D: PDB Molecule:glutaconyl-coa decarboxylase subunit a;
PDBTitle: glutaconyl-coa decarboxylase a subunit from clostridium2 symbiosum co-crystallized with crotonyl-coa
100d1pixa2



not modelled 97.9 19 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
101c2f9iD_



not modelled 97.7 21 PDB header:transferase
Chain: D: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl
PDBTitle: crystal structure of the carboxyltransferase subunit of acc2 from staphylococcus aureus
102d1on3a1



not modelled 97.6 14 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
103d1xnya2



not modelled 97.5 19 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
104d1vrga2



not modelled 97.3 25 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
105d2f9yb1



not modelled 97.2 21 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
106c2f9yB_



not modelled 97.2 21 PDB header:ligase
Chain: B: PDB Molecule:acetyl-coenzyme a carboxylase carboxyl transferase subunit
PDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli
107d2a7sa2



not modelled 97.2 23 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
108c2csuB_



not modelled 97.0 15 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:457aa long hypothetical protein;
PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3
109d1xnya1



not modelled 97.0 14 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
110d1on3a2



not modelled 97.0 21 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
111c1pixB_



not modelled 96.9 24 PDB header:lyase
Chain: B: PDB Molecule:glutaconyl-coa decarboxylase a subunit;
PDBTitle: crystal structure of the carboxyltransferase subunit of the2 bacterial ion pump glutaconyl-coenzyme a decarboxylase
112d2a7sa1



not modelled 96.8 15 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
113d1vrga1



not modelled 96.8 12 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
114d1euca2



not modelled 96.2 20 Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
115d1oi7a2



not modelled 96.1 23 Fold:Flavodoxin-like
Superfamily:Succinyl-CoA synthetase domains
Family:Succinyl-CoA synthetase domains
116c2nu9E_



not modelled 96.0 30 PDB header:ligase
Chain: E: PDB Molecule:succinyl-coa synthetase beta chain;
PDBTitle: c123at mutant of e. coli succinyl-coa synthetase2 orthorhombic crystal form
117c3mwdB_



not modelled 95.6 25 PDB header:transferase
Chain: B: PDB Molecule:atp-citrate synthase;
PDBTitle: truncated human atp-citrate lyase with citrate bound
118d1pixa3



not modelled 95.6 15 Fold:ClpP/crotonase
Superfamily:ClpP/crotonase
Family:Biotin dependent carboxylase carboxyltransferase domain
119c1oi7A_



not modelled 95.4 26 PDB header:synthetase
Chain: A: PDB Molecule:succinyl-coa synthetase alpha chain;
PDBTitle: the crystal structure of succinyl-coa synthetase alpha2 subunit from thermus thermophilus
120c2yv1A_



not modelled 95.4 19 PDB header:ligase
Chain: A: PDB Molecule:succinyl-coa ligase [adp-forming] subunit alpha;
PDBTitle: crystal structure of succinyl-coa synthetase alpha chain from2 methanocaldococcus jannaschii dsm 2661

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0