Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	N	K	V	A	Q	Y	Y	R	E	L	V	A	S	L	S	E	R	L	R	N	G	E	R	D	I	D	A	L	V	E	Q	A	R	E	R	V	I	K	T	G	E	L	T	R	T	E	V	D	E	L	T	R	A	V	R	R	D	L	E
Secondary structure
SS confidence
Disorder		?	?	?																	?	?	?	?																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	F	A	M	S	Y	E	E	S	L	K	E	E	S	D	S	V	F	M	R	V	I	K	E	S	L	W	Q	E	L	A	D	I	T	D	K	T	Q	L	E	W	R	E	V	F	Q	D	L	N	H	H	G	V	Y	H	S	G	E	V	V
Secondary structure
SS confidence
Disorder									?	?	?	?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Sequence		G	L	G	N	L	V	C	E	K	C	H	F	H	L	P	I	Y	T	P	E	V	L	T	L	C	P	K	C	G	H	D	Q	F	Q	R	R	P	F	E	P
Secondary structure
SS confidence
Disorder																																?				?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1yuz chain B Region: 5 - 150 Aligned: 133 Modelled: 138 Confidence: 94.6% Identity: 13% PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin Phyre2 PDB 2kdx chain A Region: 122 - 154 Aligned: 32 Modelled: 33 Confidence: 94.4% Identity: 19% PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein Phyre2 PDB 1dvb chain A Region: 5 - 150 Aligned: 139 Modelled: 144 Confidence: 94.2% Identity: 13% PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin Phyre2 PDB 2kwq chain A Region: 124 - 160 Aligned: 34 Modelled: 37 Confidence: 93.7% Identity: 21% PDB header:dna binding protein Chain: A: PDB Molecule:protein mcm10 homolog; PDBTitle: mcm10 c-terminal dna binding domain Phyre2 PDB 3na7 chain A Region: 12 - 157 Aligned: 138 Modelled: 146 Confidence: 93.5% Identity: 12% PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 Phyre2 PDB 1ltl chain A Region: 119 - 154 Aligned: 36 Modelled: 36 Confidence: 93.1% Identity: 25% Fold: OB-fold Superfamily: Nucleic acid-binding proteins Family: DNA replication initiator (cdc21/cdc54) N-terminal domain Phyre2 PDB 2hr5 chain B Region: 5 - 150 Aligned: 135 Modelled: 143 Confidence: 92.8% Identity: 14% PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form Phyre2 PDB 3a44 chain D Region: 122 - 154 Aligned: 33 Modelled: 33 Confidence: 91.7% Identity: 24% PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form Phyre2 PDB 3gls chain C Region: 123 - 150 Aligned: 28 Modelled: 28 Confidence: 91.5% Identity: 21% PDB header:hydrolase Chain: C: PDB Molecule:nad-dependent deacetylase sirtuin-3, PDBTitle: crystal structure of human sirt3 Phyre2 PDB 1m2k chain A Region: 124 - 150 Aligned: 27 Modelled: 27 Confidence: 91.5% Identity: 26% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Sir2 family of transcriptional regulators Phyre2 PDB 1ltl chain E Region: 123 - 154 Aligned: 32 Modelled: 32 Confidence: 91.4% Identity: 28% PDB header:replication Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54); PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum Phyre2 PDB 2gb5 chain B Region: 127 - 155 Aligned: 29 Modelled: 29 Confidence: 89.7% Identity: 21% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 1yc5 chain A domain 1 Region: 122 - 150 Aligned: 29 Modelled: 29 Confidence: 89.4% Identity: 17% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Sir2 family of transcriptional regulators Phyre2 PDB 1q1a chain A Region: 122 - 150 Aligned: 29 Modelled: 29 Confidence: 88.6% Identity: 24% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Sir2 family of transcriptional regulators Phyre2 PDB 3jwp chain A Region: 122 - 150 Aligned: 29 Modelled: 25 Confidence: 87.0% Identity: 21% PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein sir2 homologue; PDBTitle: crystal structure of plasmodium falciparum sir2a (pf13_0152) in2 complex with amp Phyre2 PDB 1ma3 chain A Region: 123 - 150 Aligned: 28 Modelled: 28 Confidence: 86.7% Identity: 29% Fold: DHS-like NAD/FAD-binding domain Superfamily: DHS-like NAD/FAD-binding domain Family: Sir2 family of transcriptional regulators Phyre2 PDB 1hk8 chain A Region: 126 - 158 Aligned: 33 Modelled: 33 Confidence: 85.4% Identity: 21% PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp Phyre2 PDB 1hk8 chain A Region: 126 - 158 Aligned: 33 Modelled: 33 Confidence: 85.4% Identity: 21% Fold: PFL-like glycyl radical enzymes Superfamily: PFL-like glycyl radical enzymes Family: Class III anaerobic ribonucleotide reductase NRDD subunit Phyre2 PDB 1q14 chain A Region: 124 - 150 Aligned: 27 Modelled: 27 Confidence: 85.2% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:hst2 protein; PDBTitle: structure and autoregulation of the yeast hst2 homolog of sir2 Phyre2 PDB 3flo chain D Region: 90 - 151 Aligned: 50 Modelled: 62 Confidence: 84.3% Identity: 16% PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit Phyre2 1 c1yuzB_ 2 c2kdxA_ 3 c1dvbA_ 4 c2kwqA_ 5 c3na7A_ 6 d1ltla_ 7 c2hr5B_ 8 c3a44D_ 9 c3glsC_ 10 d1m2ka_ 11 c1ltlE_ 12 c2gb5B_ 13 d1yc5a1 14 d1q1aa_ 15 c3jwpA_ 16 d1ma3a_ 17 c1hk8A_ 18 d1hk8a_ 19 c1q14A_ 20 c3floD_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1yuzB_ 94.6 13 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 2 c2kdxA_ 94.4 19 PDB header:metal-binding protein Chain: A: PDB Molecule:hydrogenase/urease nickel incorporation protein PDBTitle: solution structure of hypa protein 3 c1dvbA_ 94.2 13 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 4 c2kwqA_ 93.7 21 PDB header:dna binding protein Chain: A: PDB Molecule:protein mcm10 homolog; PDBTitle: mcm10 c-terminal dna binding domain 5 c3na7A_ 93.5 12 PDB header:gene regulation, chaperone Chain: A: PDB Molecule:hp0958; PDBTitle: 2.2 angstrom structure of the hp0958 protein from helicobacter pylori2 ccug 17874 6 d1ltla_ 93.1 25 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:DNA replication initiator (cdc21/cdc54) N-terminal domain 7 c2hr5B_ 92.8 14 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 8 c3a44D_ 91.7 24 PDB header:metal binding protein Chain: D: PDB Molecule:hydrogenase nickel incorporation protein hypa; PDBTitle: crystal structure of hypa in the dimeric form 9 c3glsC_ 91.5 21 PDB header:hydrolase Chain: C: PDB Molecule:nad-dependent deacetylase sirtuin-3, PDBTitle: crystal structure of human sirt3 10 d1m2ka_ 91.5 26 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 11 c1ltlE_ 91.4 28 PDB header:replication Chain: E: PDB Molecule:dna replication initiator (cdc21/cdc54); PDBTitle: the dodecamer structure of mcm from archaeal m.2 thermoautotrophicum 12 c2gb5B_ 89.7 21 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 13 d1yc5a1 89.4 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 14 d1q1aa_ 88.6 24 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 15 c3jwpA_ 87.0 21 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein sir2 homologue; PDBTitle: crystal structure of plasmodium falciparum sir2a (pf13_0152) in2 complex with amp 16 d1ma3a_ 86.7 29 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 17 c1hk8A_ 85.4 21 PDB header:oxidoreductase Chain: A: PDB Molecule:anaerobic ribonucleotide-triphosphate reductase; PDBTitle: structural basis for allosteric substrate specificity2 regulation in class iii ribonucleotide reductases:3 nrdd in complex with dgtp 18 d1hk8a_ 85.4 21 Fold:PFL-like glycyl radical enzymes Superfamily:PFL-like glycyl radical enzymes Family:Class III anaerobic ribonucleotide reductase NRDD subunit 19 c1q14A_ 85.2 22 PDB header:hydrolase Chain: A: PDB Molecule:hst2 protein; PDBTitle: structure and autoregulation of the yeast hst2 homolog of sir2 20 c3floD_ 84.3 16 PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast2 dna polymerase alpha in complex with its b subunit 21 c2lcqA_ not modelled 84.1 15 PDB header:metal binding protein Chain: A: PDB Molecule:putative toxin vapc6; PDBTitle: solution structure of the endonuclease nob1 from p.horikoshii 22 d1s5pa_ not modelled 83.7 23 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 23 d1j8fa_ not modelled 83.1 17 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 24 d1p3ja2 not modelled 81.2 27 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 25 c3pkiF_ not modelled 81.1 26 PDB header:hydrolase Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: human sirt6 crystal structure in complex with adp ribose 26 c3k35D_ not modelled 81.0 21 PDB header:hydrolase Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: crystal structure of human sirt6 27 d1zina2 not modelled 79.8 30 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 28 d1s3ga2 not modelled 79.7 30 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 29 d1lkoa2 not modelled 78.8 23 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 30 d2akla2 not modelled 78.8 31 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:PhnA zinc-binding domain 31 c3axtA_ not modelled 78.0 20 PDB header:transferase Chain: A: PDB Molecule:probable n(2),n(2)-dimethylguanosine trna methyltransferase PDBTitle: complex structure of trna methyltransferase trm1 from aquifex aeolicus2 with s-adenosyl-l-methionine 32 c3f2cA_ not modelled 76.9 21 PDB header:transferase/dna Chain: A: PDB Molecule:geobacillus kaustophilus dna polc; PDBTitle: dna polymerase polc from geobacillus kaustophilus complex with dna,2 dgtp and mn 33 d1akya2 not modelled 74.3 18 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 34 d1e4va2 not modelled 74.1 18 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 35 d2gmga1 not modelled 72.8 32 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like 36 c3ir9A_ not modelled 72.5 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:peptide chain release factor subunit 1; PDBTitle: c-terminal domain of peptide chain release factor from2 methanosarcina mazei. 37 d2b4ya1 not modelled 70.6 21 Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators 38 c2opfA_ not modelled 70.2 22 PDB header:hydrolase/dna Chain: A: PDB Molecule:endonuclease viii; PDBTitle: crystal structure of the dna repair enzyme endonuclease-viii (nei)2 from e. coli (r252a) in complex with ap-site containing dna substrate 39 d1nnqa2 not modelled 68.2 29 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 40 c3nw0A_ not modelled 67.7 25 PDB header:metal binding protein Chain: A: PDB Molecule:non-structural maintenance of chromosomes element 1 PDBTitle: crystal structure of mageg1 and nse1 complex 41 c2xf5C_ not modelled 67.6 25 PDB header:viral protein Chain: C: PDB Molecule:gp23.1; PDBTitle: crystal structure of bacillus subtilis spp1 phage gp23.1, a2 putative chaperone. 42 d1h7va_ not modelled 67.3 28 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 43 d1yuza2 not modelled 67.3 25 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 44 c2vl6C_ not modelled 67.1 25 PDB header:dna binding protein Chain: C: PDB Molecule:minichromosome maintenance protein mcm; PDBTitle: structural analysis of the sulfolobus solfataricus mcm2 protein n-terminal domain 45 d1ryqa_ not modelled 66.2 27 Fold:Rubredoxin-like Superfamily:RNA polymerase subunits Family:RpoE2-like 46 c2riqA_ not modelled 64.4 21 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: crystal structure of the third zinc-binding domain of human parp-1 47 c3h0gL_ not modelled 63.8 35 PDB header:transcription Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii PDBTitle: rna polymerase ii from schizosaccharomyces pombe 48 c2hjhB_ not modelled 62.7 38 PDB header:hydrolase Chain: B: PDB Molecule:nad-dependent histone deacetylase sir2; PDBTitle: crystal structure of the sir2 deacetylase 49 d2gnra1 not modelled 62.2 17 Fold:OB-fold Superfamily:Nucleic acid-binding proteins Family:SSO2064-like 50 c2jvnA_ not modelled 62.2 21 PDB header:transferase Chain: A: PDB Molecule:poly [adp-ribose] polymerase 1; PDBTitle: domain c of human parp-1 51 d1dx8a_ not modelled 61.1 28 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 52 c3lpeF_ not modelled 59.3 33 PDB header:transferase Chain: F: PDB Molecule:dna-directed rna polymerase subunit e''; PDBTitle: crystal structure of spt4/5ngn heterodimer complex from methanococcus2 jannaschii 53 c2kn9A_ not modelled 58.7 24 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin; PDBTitle: solution structure of zinc-substituted rubredoxin b (rv3250c) from2 mycobacterium tuberculosis. seattle structural genomics center for3 infectious disease target mytud.01635.a 54 d2dkta1 not modelled 57.3 18 Fold:CHY zinc finger-like Superfamily:CHY zinc finger-like Family:CHY zinc finger 55 c2ds8A_ not modelled 54.6 25 PDB header:metal binding protein, protein binding Chain: A: PDB Molecule:atp-dependent clp protease atp-binding subunit PDBTitle: structure of the zbd-xb complex 56 c1nl0G_ not modelled 53.5 44 PDB header:immune system Chain: G: PDB Molecule:factor ix; PDBTitle: crystal structure of human factor ix gla domain in complex2 of an inhibitory antibody, 10c12 57 c2ba1B_ not modelled 53.0 20 PDB header:rna binding protein Chain: B: PDB Molecule:archaeal exosome rna binding protein csl4; PDBTitle: archaeal exosome core 58 d1nuia2 not modelled 53.0 38 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 59 c1pqvS_ not modelled 53.0 17 PDB header:transferase/transcription Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis complex 60 d2dlqa2 not modelled 52.4 55 Fold:beta-beta-alpha zinc fingers Superfamily:beta-beta-alpha zinc fingers Family:Classic zinc finger, C2H2 61 c2emcA_ not modelled 52.3 16 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 641-2 673) of human zinc finger protein 473 62 c2nn6I_ not modelled 51.8 25 PDB header:hydrolase/transferase Chain: I: PDB Molecule:3'-5' exoribonuclease csl4 homolog; PDBTitle: structure of the human rna exosome composed of rrp41, rrp45,2 rrp46, rrp43, mtr3, rrp42, csl4, rrp4, and rrp40 63 d2cona1 not modelled 51.1 18 Fold:Rubredoxin-like Superfamily:NOB1 zinc finger-like Family:NOB1 zinc finger-like 64 c1y1yS_ not modelled 51.1 17 PDB header:transferase/transcription/dna-rna hybrid Chain: S: PDB Molecule:transcription elongation factor s-ii; PDBTitle: rna polymerase ii-tfiis-dna/rna complex 65 c3f9vA_ not modelled 50.6 24 PDB header:hydrolase Chain: A: PDB Molecule:minichromosome maintenance protein mcm; PDBTitle: crystal structure of a near full-length archaeal mcm: functional2 insights for an aaa+ hexameric helicase 66 c3iz6X_ not modelled 50.2 19 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein s27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 67 c2j6aA_ not modelled 49.8 27 PDB header:transferase Chain: A: PDB Molecule:protein trm112; PDBTitle: crystal structure of s. cerevisiae ynr046w, a zinc finger2 protein from the erf1 methyltransferase complex. 68 d1qxfa_ not modelled 48.6 27 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein S27e 69 d2ds5a1 not modelled 47.8 25 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:ClpX chaperone zinc binding domain 70 c1ovxB_ not modelled 47.8 25 PDB header:metal binding protein Chain: B: PDB Molecule:atp-dependent clp protease atp-binding subunit clpx; PDBTitle: nmr structure of the e. coli clpx chaperone zinc binding domain dimer 71 c2ja6L_ not modelled 47.3 27 PDB header:transferase Chain: L: PDB Molecule:dna-directed rna polymerases i, ii, and iii 7.7 PDBTitle: cpd lesion containing rna polymerase ii elongation complex2 b 72 c2epqA_ not modelled 45.2 29 PDB header:transcription Chain: A: PDB Molecule:poz-, at hook-, and zinc finger-containing PDBTitle: solution structure of the third zinc finger domain of zinc2 finger protein 278 73 c1k82D_ not modelled 44.2 19 PDB header:hydrolase/dna Chain: D: PDB Molecule:formamidopyrimidine-dna glycosylase; PDBTitle: crystal structure of e.coli formamidopyrimidine-dna2 glycosylase (fpg) covalently trapped with dna 74 d2ak3a2 not modelled 44.1 15 Fold:Rubredoxin-like Superfamily:Microbial and mitochondrial ADK, insert "zinc finger" domain Family:Microbial and mitochondrial ADK, insert "zinc finger" domain 75 d1dl6a_ not modelled 43.6 25 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 76 d1zbdb_ not modelled 43.2 26 Fold:FYVE/PHD zinc finger Superfamily:FYVE/PHD zinc finger Family:FYVE, a phosphatidylinositol-3-phosphate binding domain 77 c1s24A_ not modelled 43.0 22 PDB header:electron transport Chain: A: PDB Molecule:rubredoxin 2; PDBTitle: rubredoxin domain ii from pseudomonas oleovorans 78 d1s24a_ not modelled 43.0 22 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 79 d2dsxa1 not modelled 41.9 29 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 80 d6rxna_ not modelled 41.6 30 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 81 d2c4fl3 not modelled 41.3 28 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 82 c1tjlD_ not modelled 41.2 17 PDB header:transcription Chain: D: PDB Molecule:dnak suppressor protein; PDBTitle: crystal structure of transcription factor dksa from e. coli 83 d1brfa_ not modelled 41.1 29 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 84 d4rxna_ not modelled 41.0 23 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 85 c3ermD_ not modelled 41.0 18 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved protein with unknown function2 from pseudomonas syringae pv. tomato str. dc3000 86 c2ktvA_ not modelled 40.9 26 PDB header:translation Chain: A: PDB Molecule:eukaryotic peptide chain release factor subunit 1; PDBTitle: human erf1 c-domain, "open" conformer 87 d1x3za1 not modelled 40.7 30 Fold:Cysteine proteinases Superfamily:Cysteine proteinases Family:Transglutaminase core 88 c2en8A_ not modelled 40.7 22 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 224; PDBTitle: solution structure of the c2h2 type zinc finger (region 171-2 203) of human zinc finger protein 224 89 c2v3bB_ not modelled 40.5 27 PDB header:oxidoreductase Chain: B: PDB Molecule:rubredoxin 2; PDBTitle: crystal structure of the electron transfer complex2 rubredoxin - rubredoxin reductase from pseudomonas3 aeruginosa. 90 c2xgvA_ not modelled 40.0 18 PDB header:viral protein Chain: A: PDB Molecule:psiv capsid n-terminal domain; PDBTitle: structure of the n-terminal domain of capsid protein from2 rabbit endogenous lentivirus (relik) 91 d1iu5a_ not modelled 40.0 32 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 92 c2lk0A_ not modelled 39.9 38 PDB header:rna binding protein Chain: A: PDB Molecule:rna-binding protein 5; PDBTitle: solution structure and binding studies of the ranbp2-type zinc finger2 of rbm5 93 c2e2zA_ not modelled 39.5 31 PDB header:protein transport, chaperone regulator Chain: A: PDB Molecule:tim15; PDBTitle: solution nmr structure of yeast tim15, co-chaperone of2 mitochondrial hsp70 94 c3izbX_ not modelled 39.2 14 PDB header:ribosome Chain: X: PDB Molecule:40s ribosomal protein rps27 (s27e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 95 d1kbea_ not modelled 38.3 14 Fold:Cysteine-rich domain Superfamily:Cysteine-rich domain Family:Protein kinase cysteine-rich domain (cys2, phorbol-binding domain) 96 c2avuF_ not modelled 38.1 26 PDB header:transcription activator Chain: F: PDB Molecule:flagellar transcriptional activator flhc; PDBTitle: structure of the escherichia coli flhdc complex, a2 prokaryotic heteromeric regulator of transcription 97 d1danl3 not modelled 36.9 28 Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain 98 d1pfta_ not modelled 36.8 42 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:Transcriptional factor domain 99 d1iroa_ not modelled 36.8 27 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 100 d2avue1 not modelled 36.7 26 Fold:FlhC-like Superfamily:FlhC-like Family:FlhC-like 101 d1qcva_ not modelled 36.1 19 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 102 c2rowA_ not modelled 35.1 29 PDB header:transferase Chain: A: PDB Molecule:rho-associated protein kinase 2; PDBTitle: the c1 domain of rock ii 103 d2fiya1 not modelled 34.8 26 Fold:FdhE-like Superfamily:FdhE-like Family:FdhE-like 104 c3g9yA_ not modelled 34.7 31 PDB header:transcription/rna Chain: A: PDB Molecule:zinc finger ran-binding domain-containing protein 2; PDBTitle: crystal structure of the second zinc finger from zranb2/znf265 bound2 to 6 nt ssrna sequence agguaa 105 d1rb9a_ not modelled 33.9 31 Fold:Rubredoxin-like Superfamily:Rubredoxin-like Family:Rubredoxin 106 d2ayja1 not modelled 33.7 35 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L40e 107 c3h0gN_ not modelled 33.6 14 PDB header:transcription Chain: N: PDB Molecule:dna-directed rna polymerase ii subunit rpb2; PDBTitle: rna polymerase ii from schizosaccharomyces pombe 108 d1ctla1 not modelled 33.6 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 109 c2xzm6_ not modelled 32.9 23 PDB header:ribosome Chain: 6: PDB Molecule:rps27e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 110 c2yu5A_ not modelled 32.8 33 PDB header:rna binding protein Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the zf-c2h2 domain (669-699aa) in2 zinc finger protein 473 111 c2js4A_ not modelled 31.4 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0434 protein bb2007; PDBTitle: solution nmr structure of bordetella bronchiseptica protein2 bb2007. northeast structural genomics consortium target3 bor54 112 c2en3A_ not modelled 31.3 19 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 95 homolog; PDBTitle: solution structure of the c2h2 type zinc finger (region 796-2 828) of human zinc finger protein 95 homolog 113 c2eozA_ not modelled 31.0 19 PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 473; PDBTitle: solution structure of the c2h2 type zinc finger (region 809-2 841) of human zinc finger protein 473 114 c3ky9B_ not modelled 30.9 14 PDB header:apoptosis Chain: B: PDB Molecule:proto-oncogene vav; PDBTitle: autoinhibited vav1 115 d1jj2y_ not modelled 30.6 25 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae 116 c1i3qI_ not modelled 30.6 44 PDB header:transcription Chain: I: PDB Molecule:dna-directed rna polymerase ii 14.2kd PDBTitle: rna polymerase ii crystal form i at 3.1 a resolution 117 c3pihA_ not modelled 30.6 30 PDB header:hydrolase/dna Chain: A: PDB Molecule:uvrabc system protein a; PDBTitle: t. maritima uvra in complex with fluorescein-modified dna 118 d1imla1 not modelled 30.4 36 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:LIM domain 119 c2kpiA_ not modelled 30.3 28 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein sco3027; PDBTitle: solution nmr structure of streptomyces coelicolor sco30272 modeled with zn+2 bound, northeast structural genomics3 consortium target rr58 120 d1vqoz1 not modelled 29.6 25 Fold:Rubredoxin-like Superfamily:Zn-binding ribosomal proteins Family:Ribosomal protein L37ae

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0