Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP77434
DateThu Jan 5 12:29:17 GMT 2012
Unique Job ID353231e166aaa3e1

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2x5dD_
Top template information
PDB header:transferase
Chain: D: PDB Molecule:probable aminotransferase;
PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa
Confidence and coverage
Confidence:100.0% Coverage: 92%
380 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMGNPDGATPPHIVEKLCT
Secondary structure 
SS confidence 
Disorder  ?????
????
??
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  VAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAIVTIGSKEGLAHLMLATLD
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  HGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNELERAIRESYPKPKMMILGFP
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  SNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGARDVAVEFF
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  TLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYGTFTPLQVAAIAALEGDQQCVRDIA
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  EQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSP
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410..
Sequence  GIGFGDYGDTHVRFALIENRDRIRQAIRGIKAMFRADGLLPASSKHIHENAE
Secondary structure 
SS confidence 
Disorder 
???????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2x5d chain D

3D model

Region: 20 - 399
Aligned: 380
Modelled: 380
Confidence: 100.0%
Identity: 92%
PDB header:transferase
Chain: D: PDB Molecule:probable aminotransferase;
PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa

Phyre2

PDB 3g0t chain A

3D model

Region: 5 - 394
Aligned: 384
Modelled: 387
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution

Phyre2

PDB 3e2y chain B

3D model

Region: 11 - 393
Aligned: 378
Modelled: 383
Confidence: 100.0%
Identity: 25%
PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine

Phyre2

PDB 2r5e chain A domain 1

3D model

Region: 11 - 397
Aligned: 382
Modelled: 387
Confidence: 100.0%
Identity: 24%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 3h14 chain A

3D model

Region: 11 - 397
Aligned: 365
Modelled: 385
Confidence: 100.0%
Identity: 24%
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi

Phyre2

PDB 1w7l chain A

3D model

Region: 9 - 396
Aligned: 382
Modelled: 388
Confidence: 100.0%
Identity: 21%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 1u08 chain A

3D model

Region: 12 - 392
Aligned: 373
Modelled: 379
Confidence: 100.0%
Identity: 22%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 1o4s chain A

3D model

Region: 11 - 396
Aligned: 373
Modelled: 381
Confidence: 100.0%
Identity: 29%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 3qgu chain B

3D model

Region: 2 - 394
Aligned: 385
Modelled: 390
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii

Phyre2

PDB 1j32 chain A

3D model

Region: 8 - 396
Aligned: 383
Modelled: 387
Confidence: 100.0%
Identity: 28%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 1gde chain A

3D model

Region: 9 - 402
Aligned: 387
Modelled: 392
Confidence: 100.0%
Identity: 25%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 2o0r chain A

3D model

Region: 11 - 395
Aligned: 380
Modelled: 385
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis

Phyre2

PDB 3b46 chain B

3D model

Region: 5 - 395
Aligned: 390
Modelled: 391
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae

Phyre2

PDB 3jtx chain B

3D model

Region: 10 - 395
Aligned: 376
Modelled: 384
Confidence: 100.0%
Identity: 27%
PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution

Phyre2

PDB 2o1b chain A

3D model

Region: 11 - 397
Aligned: 373
Modelled: 387
Confidence: 100.0%
Identity: 29%
PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class i;
PDBTitle: structure of aminotransferase from staphylococcus aureus

Phyre2

PDB 3eib chain B

3D model

Region: 9 - 396
Aligned: 379
Modelled: 385
Confidence: 100.0%
Identity: 25%
PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana

Phyre2

PDB 3dzz chain B

3D model

Region: 34 - 396
Aligned: 357
Modelled: 363
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution

Phyre2

PDB 3nra chain A

3D model

Region: 35 - 396
Aligned: 360
Modelled: 362
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution

Phyre2

PDB 2gb3 chain A domain 1

3D model

Region: 11 - 396
Aligned: 374
Modelled: 385
Confidence: 100.0%
Identity: 24%
Fold: PLP-dependent transferase-like
Superfamily: PLP-dependent transferases
Family: AAT-like

Phyre2

PDB 2dou chain A

3D model

Region: 17 - 394
Aligned: 370
Modelled: 378
Confidence: 100.0%
Identity: 35%
PDB header:transferase
Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase;
PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8

Phyre2
1
c2x5dD_
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c3g0tA_
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c3e2yB_
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d2r5ea1
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c3h14A_
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d1w7la_
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d1u08a_
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d1o4sa_
9
c3qguB_
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d1j32a_
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d1gdea_
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c2o0rA_
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c3b46B_
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c3jtxB_
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c2o1bA_
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c3eibB_
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c3dzzB_
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c3nraA_
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d2gb3a1
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c2douA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2x5dD_
100.0 92 PDB header:transferase
Chain: D: PDB Molecule:probable aminotransferase;
PDBTitle: crystal structure of a probable aminotransferase from2 pseudomonas aeruginosa
2c3g0tA_
100.0 18 PDB header:transferase
Chain: A: PDB Molecule:putative aminotransferase;
PDBTitle: crystal structure of putative aspartate aminotransferase (np_905498.1)2 from porphyromonas gingivalis w83 at 1.75 a resolution
3c3e2yB_
100.0 25 PDB header:transferase, lyase
Chain: B: PDB Molecule:kynurenine-oxoglutarate transaminase 3;
PDBTitle: crystal structure of mouse kynurenine aminotransferase iii in complex2 with glutamine
4d2r5ea1
100.0 24 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
5c3h14A_
100.0 24 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative aminotransferase from silicibacter2 pomeroyi
6d1w7la_
100.0 21 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
7d1u08a_
100.0 22 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
8d1o4sa_
100.0 29 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
9c3qguB_
100.0 23 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii
10d1j32a_
100.0 28 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
11d1gdea_
100.0 25 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
12c2o0rA_
100.0 27 PDB header:transferase
Chain: A: PDB Molecule:rv0858c (n-succinyldiaminopimelate aminotransferase);
PDBTitle: the three-dimensional structure of n-succinyldiaminopimelate2 aminotransferase from mycobacterium tuberculosis
13c3b46B_
100.0 19 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase bna3;
PDBTitle: crystal structure of bna3p, a putative kynurenine2 aminotransferase from saccharomyces cerevisiae
14c3jtxB_
100.0 27 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution
15c2o1bA_
100.0 29 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase, class i;
PDBTitle: structure of aminotransferase from staphylococcus aureus
16c3eibB_
100.0 25 PDB header:transferase
Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of k270n variant of ll-diaminopimelate2 aminotransferase from arabidopsis thaliana
17c3dzzB_
100.0 17 PDB header:transferase
Chain: B: PDB Molecule:putative pyridoxal 5'-phosphate-dependent c-s lyase;
PDBTitle: crystal structure of a putative plp-dependent aminotransferase2 (lbul_1103) from lactobacillus delbrueckii subsp. at 1.61 a3 resolution
18c3nraA_
100.0 21 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate aminotransferase (yp_354942.1) from2 rhodobacter sphaeroides 2.4.1 at 2.15 a resolution
19d2gb3a1
100.0 24 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
20c2douA_
100.0 35 PDB header:transferase
Chain: A: PDB Molecule:probable n-succinyldiaminopimelate aminotransferase;
PDBTitle: probable n-succinyldiaminopimelate aminotransferase (ttha0342) from2 thermus thermophilus hb8
21c2zc0C_
not modelled 100.0 21 PDB header:transferase
Chain: C: PDB Molecule:alanine glyoxylate transaminase;
PDBTitle: crystal structure of an archaeal alanine:glyoxylate aminotransferase
22c1ynuA_
not modelled 100.0 16 PDB header:lyase
Chain: A: PDB Molecule:1-aminocyclopropane-1-carboxylate synthase;
PDBTitle: crystal structure of apple acc synthase in complex with l-vinylglycine
23d1xi9a_
not modelled 100.0 27 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
24c3ihjA_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:alanine aminotransferase 2;
PDBTitle: human alanine aminotransferase 2 in complex with plp
25d1b5pa_
not modelled 100.0 29 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
26c3ezsB_
not modelled 100.0 24 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase aspb;
PDBTitle: crystal structure of aminotransferase aspb (np_207418.1) from2 helicobacter pylori 26695 at 2.19 a resolution
27c3if2B_
not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution
28c3l8aB_
not modelled 100.0 18 PDB header:lyase
Chain: B: PDB Molecule:putative aminotransferase, probable beta-cystathionase;
PDBTitle: crystal structure of metc from streptococcus mutans
29d1iaya_
not modelled 100.0 19 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
30c3asaA_
not modelled 100.0 26 PDB header:transferase
Chain: A: PDB Molecule:ll-diaminopimelate aminotransferase;
PDBTitle: crystal structure of apo-ll-diaminopimelate aminotransferase from2 chlamydia trachomatis
31d1m7ya_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
32d1c7na_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
33d1bw0a_
not modelled 100.0 22 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
34d1vp4a_
not modelled 100.0 24 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
35c3pplB_
not modelled 100.0 18 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution
36d1wsta1
not modelled 100.0 24 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
37c3eleB_
not modelled 100.0 22 PDB header:transferase
Chain: B: PDB Molecule:amino transferase;
PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution
38d1x0ma1
not modelled 100.0 23 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
39c3kaxB_
not modelled 100.0 18 PDB header:lyase
Chain: B: PDB Molecule:aminotransferase, classes i and ii;
PDBTitle: crystal structure of a putative c-s lyase from bacillus anthracis
40c3fdbA_
not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:putative plp-dependent beta-cystathionase;
PDBTitle: crystal structure of a putative plp-dependent beta-cystathionase2 (aecd, dip1736) from corynebacterium diphtheriae at 1.99 a resolution
41c2z61A_
not modelled 100.0 29 PDB header:transferase
Chain: A: PDB Molecule:probable aspartate aminotransferase 2;
PDBTitle: crystal structure of mj0684 from methanococcus jannaschii2 reveals its similarity in the active site to kynurenine3 aminotransferases
42c2x5fB_
not modelled 100.0 17 PDB header:transferase
Chain: B: PDB Molecule:aspartate_tyrosine_phenylalanine pyridoxal-5'
PDBTitle: crystal structure of the methicillin-resistant2 staphylococcus aureus sar2028, an3 aspartate_tyrosine_phenylalanine pyridoxal-5'-phosphate4 dependent aminotransferase
43c3ez1A_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase mocr family;
PDBTitle: crystal structure of putative aminotransferase (mocr family)2 (yp_604413.1) from deinococcus geothermalis dsm 11300 at 2.60 a3 resolution
44c3t18D_
not modelled 100.0 18 PDB header:transferase
Chain: D: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase from anaerococcus prevotii dsm2 20548.
45c1d2fB_
not modelled 100.0 20 PDB header:transferase
Chain: B: PDB Molecule:maly protein;
PDBTitle: x-ray structure of maly from escherichia coli: a pyridoxal-5'-2 phosphate-dependent enzyme acting as a modulator in mal gene3 expression
46c3k7yA_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: aspartate aminotransferase of plasmodium falciparum
47d1d2fa_
not modelled 100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
48d7aata_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
49d2csta_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
50c3rq1A_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of aminotransferase class i and ii from veillonella2 parvula
51d2ay1a_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
52d1ajsa_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
53c3dydB_
not modelled 100.0 19 PDB header:transferase
Chain: B: PDB Molecule:tyrosine aminotransferase;
PDBTitle: human tyrosine aminotransferase
54d1yaaa_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
55c3dc1A_
not modelled 100.0 21 PDB header:transferase
Chain: A: PDB Molecule:kynurenine/alpha-aminoadipate aminotransferase
PDBTitle: crystal structure of kynurenine aminotransferase ii complex with2 alpha-ketoglutarate
56c3pdxA_
not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:tyrosine aminotransferase;
PDBTitle: crystal structural of mouse tyrosine aminotransferase
57c3d6kB_
not modelled 100.0 16 PDB header:transferase
Chain: B: PDB Molecule:putative aminotransferase;
PDBTitle: the crystal structure of a putative aminotransferase from2 corynebacterium diphtheriae
58c3g7qA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:valine-pyruvate aminotransferase;
PDBTitle: crystal structure of valine-pyruvate aminotransferase avta2 (np_462565.1) from salmonella typhimurium lt2 at 1.80 a resolution
59d1v2da_
not modelled 100.0 25 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
60d2q7wa1
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
61c3cbfA_
not modelled 100.0 21 PDB header:transferase
Chain: A: PDB Molecule:alpha-aminodipate aminotransferase;
PDBTitle: crystal structure of lysn, alpha-aminoadipate2 aminotransferase, from thermus thermophilus hb27
62c3op7A_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase class i and ii;
PDBTitle: crystal structure of a plp-dependent aminotransferase (zp_03625122.1)2 from streptococcus suis 89-1591 at 1.70 a resolution
63c2zy3A_
not modelled 100.0 16 PDB header:lyase
Chain: A: PDB Molecule:l-aspartate beta-decarboxylase;
PDBTitle: dodecameric l-aspartate beta-decarboxylase
64d3tata_
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
65c3f6tA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of aspartate aminotransferase (e.c. 2.6.1.1)2 (yp_194538.1) from lactobacillus acidophilus ncfm at 2.15 a3 resolution
66c3ly1C_
not modelled 100.0 19 PDB header:transferase
Chain: C: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (yp_050345.1) from erwinia carotovora atroseptica scri1043 at 1.80 a3 resolution
67c3mebB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:aspartate aminotransferase;
PDBTitle: structure of cytoplasmic aspartate aminotransferase from giardia2 lamblia
68c3bwnF_
not modelled 100.0 17 PDB header:transferase
Chain: F: PDB Molecule:l-tryptophan aminotransferase;
PDBTitle: l-tryptophan aminotransferase
69c3eucB_
not modelled 100.0 20 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase 2;
PDBTitle: crystal structure of histidinol-phosphate aminotransferase2 (yp_297314.1) from ralstonia eutropha jmp134 at 2.05 a resolution
70c3getA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of putative histidinol-phosphate aminotransferase2 (np_281508.1) from campylobacter jejuni at 2.01 a resolution
71d1lc5a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
72d2f8ja1
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
73d2hoxa1
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
74c3cq6E_
not modelled 100.0 19 PDB header:transferase
Chain: E: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: histidinol-phosphate aminotransferase from corynebacterium2 glutamicum holo-form (plp covalently bound )
75c3hdoB_
not modelled 100.0 23 PDB header:transferase
Chain: B: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a histidinol-phosphate aminotransferase from2 geobacter metallireducens
76d1fg7a_
not modelled 100.0 20 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
77c3ffhA_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of histidinol-phosphate aminotransferase from2 listeria innocua clip11262.
78c3ftbA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:histidinol-phosphate aminotransferase;
PDBTitle: the crystal structure of the histidinol-phosphate2 aminotransferase from clostridium acetobutylicum
79c3fkdC_
not modelled 100.0 17 PDB header:lyase
Chain: C: PDB Molecule:l-threonine-o-3-phosphate decarboxylase;
PDBTitle: the crystal structure of l-threonine-o-3-phosphate2 decarboxylase from porphyromonas gingivalis
80c3p1tB_
not modelled 100.0 19 PDB header:transferase
Chain: B: PDB Molecule:putative histidinol-phosphate aminotransferase;
PDBTitle: crystal structure of a putative aminotransferase (bpsl1724) from2 burkholderia pseudomallei k96243 at 2.60 a resolution
81d2aeua1
not modelled 100.0 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SelA-like
82d1tpla_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
83c3hqtB_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:cai-1 autoinducer synthase;
PDBTitle: plp-dependent acyl-coa transferase cqsa
84c2w8wA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: n100y spt with plp-ser
85c3a2bA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:serine palmitoyltransferase;
PDBTitle: crystal structure of serine palmitoyltransferase from sphingobacterium2 multivorum with substrate l-serine
86c3f0hA_
not modelled 100.0 11 PDB header:transferase
Chain: A: PDB Molecule:aminotransferase;
PDBTitle: crystal structure of aminotransferase (rer070207000802) from2 eubacterium rectale at 1.70 a resolution
87c2z9wA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:aspartate aminotransferase;
PDBTitle: crystal structure of pyridoxamine-pyruvate aminotransferase complexed2 with pyridoxal
88c3tqxA_
not modelled 100.0 15 PDB header:transferase
Chain: A: PDB Molecule:2-amino-3-ketobutyrate coenzyme a ligase;
PDBTitle: structure of the 2-amino-3-ketobutyrate coenzyme a ligase (kbl) from2 coxiella burnetii
89c3nnkC_
not modelled 100.0 15 PDB header:transferase
Chain: C: PDB Molecule:ureidoglycine-glyoxylate aminotransferase;
PDBTitle: biochemical and structural characterization of a ureidoglycine2 aminotransferase in the klebsiella pneumoniae uric acid catabolic3 pathway
90c2eh6A_
not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase from aquifex2 aeolicus vf5
91c3islA_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:purine catabolism protein pucg;
PDBTitle: crystal structure of ureidoglycine-glyoxylate aminotransferase (pucg)2 from bacillus subtilis
92d1fc4a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
93d1bs0a_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
94d1vjoa_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
95d1m6sa_
not modelled 100.0 18 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
96c3nx3A_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (argd) from2 campylobacter jejuni
97d2bwna1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
98d1v72a1
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
99d1svva_
not modelled 100.0 12 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:AAT-like
100c2ordA_
not modelled 100.0 16 PDB header:transferase
Chain: A: PDB Molecule:acetylornithine aminotransferase;
PDBTitle: crystal structure of acetylornithine aminotransferase (ec 2.6.1.11)2 (acoat) (tm1785) from thermotoga maritima at 1.40 a resolution
101d1c7ga_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Beta-eliminating lyases
102c3pj0D_
not modelled 100.0 11 PDB header:lyase
Chain: D: PDB Molecule:lmo0305 protein;
PDBTitle: crystal structure of a putative l-allo-threonine aldolase (lmo0305)2 from listeria monocytogenes egd-e at 1.80 a resolution
103c2dkjB_
not modelled 100.0 14 PDB header:transferase
Chain: B: PDB Molecule:serine hydroxymethyltransferase;
PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase
104d1vefa1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
105c3i4jC_
not modelled 100.0 11 PDB header:transferase
Chain: C: PDB Molecule:aminotransferase, class iii;
PDBTitle: crystal structure of aminotransferase, class iii from2 deinococcus radiodurans
106c2po3B_
not modelled 100.0 13 PDB header:transferase
Chain: B: PDB Molecule:4-dehydrase;
PDBTitle: crystal structure analysis of desi in the presence of its2 tdp-sugar product
107d1kl1a_
not modelled 100.0 16 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
108d2cfba1
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
109d1dfoa_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
110c2huuA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:alanine glyoxylate aminotransferase;
PDBTitle: crystal structure of aedes aegypti alanine glyoxylate2 aminotransferase in complex with alanine
111d2e7ja1
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:SepSecS-like
112d2ch1a1
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
113d1eg5a_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
114c3ffrA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:phosphoserine aminotransferase serc;
PDBTitle: crystal structure of a phosphoserine aminotransferase serc (chu_0995)2 from cytophaga hutchinsonii atcc 33406 at 1.75 a resolution
115c3caiA_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:possible aminotransferase;
PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein
116d1gc0a_
not modelled 100.0 15 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
117c2dr1A_
not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:386aa long hypothetical serine aminotransferase;
PDBTitle: crystal structure of the ph1308 protein from pyrococcus horikoshii ot3
118d1b9ha_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:GABA-aminotransferase-like
119d1iuga_
not modelled 100.0 13 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
120d1h0ca_
not modelled 100.0 14 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0