Email l.a.kelley@imperial.ac.uk Description P37765 Date Thu Jan 5 11:57:34 GMT 2012 Unique Job ID 352d4e2109f0a5b5

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3dh3C_ 100.0 31 PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate 2 c1vioA_ 100.0 26 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase 3 c1kskA_ 100.0 30 PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: structure of rsua 4 d1vioa1 100.0 28 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 5 d1kska4 100.0 32 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 6 c2gmlA_ 100.0 30 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of catalytic domain of e.coli rluf 7 c2omlA_ 100.0 37 PDB header:isomerase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 8 c2olwB_ 100.0 36 PDB header:isomerase Chain: B: PDB Molecule:ribosomal large subunit pseudouridine synthase e; PDBTitle: crystal structure of e. coli pseudouridine synthase rlue 9 d1v9fa_ 100.0 19 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 10 c1v9fA_ 100.0 19 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: crystal structure of catalytic domain of pseudouridine2 synthase rlud from escherichia coli 11 c2i82D_ 100.0 20 PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure 12 d1v9ka_ 100.0 17 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase RsuA/RluD 13 c1qyuA_ 100.0 18 PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud 14 d1vioa2 99.1 25 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 15 d2ey4a2 99.0 23 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 16 d2apoa2 99.0 17 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 17 c2k6pA_ 99.0 15 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein hp_1423; PDBTitle: solution structure of hypothetical protein, hp1423 18 c1dm9A_ 98.9 27 PDB header:structural genomics Chain: A: PDB Molecule:hypothetical 15.5 kd protein in mrca-pcka PDBTitle: heat shock protein 15 kd 19 d1dm9a_ 98.9 27 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Heat shock protein 15 kD 20 d1p9ka_ 98.9 26 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:YbcJ-like 21 c3bbnD_ not modelled 98.9 16 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. 22 d1r3ea2 not modelled 98.9 23 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 23 c2cqjA_ not modelled 98.9 20 PDB header:rna binding protein Chain: A: PDB Molecule:u3 small nucleolar ribonucleoprotein protein PDBTitle: solution structure of the s4 domain of u3 small nucleolar2 ribonucleoprotein protein imp3 homolog 24 c2ey4A_ not modelled 98.8 23 PDB header:isomerase/biosynthetic protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of a cbf5-nop10-gar1 complex 25 d1k8wa5 not modelled 98.8 23 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 26 c2apoA_ not modelled 98.8 16 PDB header:isomerase/rna binding protein Chain: A: PDB Molecule:probable trna pseudouridine synthase b; PDBTitle: crystal structure of the methanococcus jannaschii cbf52 nop10 complex 27 d1c06a_ not modelled 98.7 20 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 28 c1k8wA_ not modelled 98.5 23 PDB header:lyase/rna Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: crystal structure of the e. coli pseudouridine synthase2 trub bound to a t stem-loop rna 29 d2uubd1 not modelled 98.5 28 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 30 c1sgvA_ not modelled 98.4 19 PDB header:lyase Chain: A: PDB Molecule:trna pseudouridine synthase b; PDBTitle: structure of trna psi55 pseudouridine synthase (trub) 31 d1sgva2 not modelled 98.4 19 Fold:Pseudouridine synthase Superfamily:Pseudouridine synthase Family:Pseudouridine synthase II TruB 32 c3uaiA_ not modelled 98.4 19 PDB header:isomerase/chaperone Chain: A: PDB Molecule:h/aca ribonucleoprotein complex subunit 4; PDBTitle: structure of the shq1-cbf5-nop10-gar1 complex from saccharomyces2 cerevisiae 33 d2gy9d1 not modelled 98.3 22 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Ribosomal protein S4 34 c3hp7A_ not modelled 97.9 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hemolysin, putative; PDBTitle: putative hemolysin from streptococcus thermophilus. 35 d1kska3 not modelled 97.7 28 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Pseudouridine synthase RsuA N-terminal domain 36 c1s1hD_ not modelled 97.6 16 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s9-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i. 37 c2xzmD_ not modelled 97.6 15 PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4 containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 38 c1ze2B_ not modelled 96.7 22 PDB header:lyase/rna Chain: B: PDB Molecule:trna pseudouridine synthase b; PDBTitle: conformational change of pseudouridine 55 synthase upon its2 association with rna substrate 39 d1h3fa2 not modelled 96.7 17 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 40 d1jh3a_ not modelled 96.3 28 Fold:Alpha-L RNA-binding motif Superfamily:Alpha-L RNA-binding motif Family:Tyrosyl-tRNA synthetase (TyrRS), C-terminal domain 41 c1h3eA_ not modelled 96.1 18 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from thermus thermophilus complexed2 with wild-type trnatyr(gua) and with atp and tyrosinol 42 c2janD_ not modelled 95.3 22 PDB header:ligase Chain: D: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: tyrosyl-trna synthetase from mycobacterium tuberculosis in2 unliganded state 43 c3kbgA_ not modelled 93.6 35 PDB header:ribosomal protein Chain: A: PDB Molecule:30s ribosomal protein s4e; PDBTitle: crystal structure of the 30s ribosomal protein s4e from2 thermoplasma acidophilum. northeast structural genomics3 consortium target tar28. 44 c3iz6C_ not modelled 92.8 20 PDB header:ribosome Chain: C: PDB Molecule:40s ribosomal protein s9 (s4p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 45 c3izbD_ not modelled 91.0 23 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein rps4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 46 c3iz6D_ not modelled 91.0 26 PDB header:ribosome Chain: D: PDB Molecule:40s ribosomal protein s4 (s4e); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 47 c2xzmW_ not modelled 90.9 22 PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 48 d2hzaa1 not modelled 65.9 31 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 49 d2hzab1 not modelled 64.6 31 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 50 c1q5vB_ not modelled 50.3 31 PDB header:transcription Chain: B: PDB Molecule:nickel responsive regulator; PDBTitle: apo-nikr 51 d2bj7a1 not modelled 48.4 29 Fold:Ribbon-helix-helix Superfamily:Ribbon-helix-helix Family:CopG-like 52 c3h7hA_ not modelled 47.7 20 PDB header:transcription Chain: A: PDB Molecule:transcription elongation factor spt4; PDBTitle: crystal structure of the human transcription elongation factor dsif,2 hspt4/hspt5 (176-273) 53 c2bj3D_ not modelled 47.3 29 PDB header:transcription Chain: D: PDB Molecule:nickel responsive regulator; PDBTitle: nikr-apo 54 c2exuA_ not modelled 40.3 20 PDB header:transcription Chain: A: PDB Molecule:transcription initiation protein spt4/spt5; PDBTitle: crystal structure of saccharomyces cerevisiae transcription elongation2 factors spt4-spt5ngn domain 55 d1d4ta_ not modelled 32.1 18 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 56 c2ca9B_ not modelled 30.9 23 PDB header:transcriptional regulation Chain: B: PDB Molecule:putative nickel-responsive regulator; PDBTitle: apo-nikr from helicobacter pylori in closed trans-2 conformation 57 c2ktlA_ not modelled 24.6 32 PDB header:ligase Chain: A: PDB Molecule:tyrosyl-trna synthetase; PDBTitle: structure of c-terminal domain from mttyrrs of a. nidulans 58 d1f2fa_ not modelled 20.4 11 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 59 d2g1la1 not modelled 18.2 12 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 60 c3iz5w_ not modelled 17.9 33 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein l22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 61 d1rwsa_ not modelled 17.3 23 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 62 c2r9qD_ not modelled 16.6 9 PDB header:hydrolase Chain: D: PDB Molecule:2'-deoxycytidine 5'-triphosphate deaminase; PDBTitle: crystal structure of 2'-deoxycytidine 5'-triphosphate deaminase from2 agrobacterium tumefaciens 63 c2kmmA_ not modelled 16.4 14 PDB header:hydrolase Chain: A: PDB Molecule:guanosine-3',5'-bis(diphosphate) 3'- PDBTitle: solution nmr structure of the tgs domain of pg1808 from2 porphyromonas gingivalis. northeast structural genomics3 consortium target pgr122a (418-481) 64 c3hvzB_ not modelled 15.6 23 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the tgs domain of the clolep_03100 protein from2 clostridium leptum, northeast structural genomics consortium target3 qlr13a 65 d1o48a_ not modelled 15.5 11 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 66 d1i3za_ not modelled 15.0 22 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 67 d2cu3a1 not modelled 13.9 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:ThiS 68 c1yj5C_ not modelled 12.6 17 PDB header:transferase Chain: C: PDB Molecule:5' polynucleotide kinase-3' phosphatase fha domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme 69 d1tq5a1 not modelled 11.4 24 Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:Pirin-like 70 d1nyra2 not modelled 11.1 18 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 71 c1gxcA_ not modelled 10.9 15 PDB header:phosphoprotein-binding domain Chain: A: PDB Molecule:serine/threonine-protein kinase chk2; PDBTitle: fha domain from human chk2 kinase in complex with a2 synthetic phosphopeptide 72 d1gxca_ not modelled 10.9 15 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 73 d1tkea1 not modelled 10.8 26 Fold:beta-Grasp (ubiquitin-like) Superfamily:TGS-like Family:TGS domain 74 c3po0A_ not modelled 10.3 25 PDB header:protein binding Chain: A: PDB Molecule:small archaeal modifier protein 1; PDBTitle: crystal structure of samp1 from haloferax volcanii 75 c3izcw_ not modelled 10.2 30 PDB header:ribosome Chain: W: PDB Molecule:60s ribosomal protein rpl22 (l22e); PDBTitle: localization of the large subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 76 d1fm0d_ not modelled 10.2 9 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 77 c3mazA_ not modelled 10.0 16 PDB header:signaling protein Chain: A: PDB Molecule:signal-transducing adaptor protein 1; PDBTitle: crystal structure of the human brdg1/stap-1 sh2 domain in complex with2 the ntal ptyr136 peptide 78 c3kt9A_ not modelled 9.4 21 PDB header:hydrolase Chain: A: PDB Molecule:aprataxin; PDBTitle: aprataxin fha domain 79 d1fhsa_ not modelled 9.3 13 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 80 d1g6ga_ not modelled 9.1 13 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 81 d1rpya_ not modelled 9.1 27 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 82 c1ka6A_ not modelled 9.0 17 PDB header:immune system Chain: A: PDB Molecule:sh2 domain protein 1a; PDBTitle: sap/sh2d1a bound to peptide n-py 83 c1t6sB_ not modelled 9.0 22 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of a conserved hypothetical protein from chlorobium2 tepidum 84 c2eh0A_ not modelled 9.0 12 PDB header:transport protein Chain: A: PDB Molecule:kinesin-like protein kif1b; PDBTitle: solution structure of the fha domain from human kinesin-2 like protein kif1b 85 d1lgpa_ not modelled 9.0 7 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 86 c1mzwB_ not modelled 8.9 31 PDB header:isomerase Chain: B: PDB Molecule:u4/u6 snrnp 60kda protein; PDBTitle: crystal structure of a u4/u6 snrnp complex between human2 spliceosomal cyclophilin h and a u4/u6-60k peptide 87 c2gsbA_ not modelled 8.5 11 PDB header:signaling protein Chain: A: PDB Molecule:ras gtpase-activating protein 1; PDBTitle: solution structure of the second sh2 domain of human ras2 gtpase-activating protein 1 88 d1qcfa2 not modelled 8.3 10 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain 89 d1vjka_ not modelled 8.2 8 Fold:beta-Grasp (ubiquitin-like) Superfamily:MoaD/ThiS Family:MoaD 90 d1t6sa2 not modelled 8.1 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:ScpB/YpuH-like 91 c2w1oA_ not modelled 8.1 29 PDB header:translation Chain: A: PDB Molecule:60s acidic ribosomal protein p2; PDBTitle: nmr structure of dimerization domain of human ribosomal2 protein p2 92 d1g3ga_ not modelled 8.0 13 Fold:SMAD/FHA domain Superfamily:SMAD/FHA domain Family:FHA domain 93 c3b4sA_ not modelled 7.5 29 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein luxt; PDBTitle: crystal structure of a luxt domain from vibrio2 parahaemolyticus rimd 2210633 94 c2qieB_ not modelled 7.5 13 PDB header:transferase Chain: B: PDB Molecule:molybdopterin synthase small subunit; PDBTitle: staphylococcus aureus molybdopterin synthase in complex2 with precursor z 95 c2el8A_ not modelled 7.4 9 PDB header:signaling protein Chain: A: PDB Molecule:signal-transducing adaptor protein 2; PDBTitle: solution structure of the human stap2 sh2 domain 96 c2ysxA_ not modelled 7.1 9 PDB header:signaling protein Chain: A: PDB Molecule:signaling inositol polyphosphate phosphatase PDBTitle: solution structure of the human ship sh2 domain 97 d2exda1 not modelled 7.0 25 Fold:OB-fold Superfamily:NfeD domain-like Family:NfeD domain-like 98 c2k5hA_ not modelled 7.0 33 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: solution nmr structure of protein encoded by mth693 from2 methanobacterium thermoautotrophicum: northeast structural3 genomics consortium target tt824a 99 d1opka2 not modelled 7.0 14 Fold:SH2-like Superfamily:SH2 domain Family:SH2 domain