Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	A	M	H	L	N	E	N	L	D	D	N	G	E	M	H	D	I	N	V	T	P	F	I	D	V	M	L	V	L	L	I	I	F	M	V	A	A	P	L	A	T	V	D	V	K	V	N	L	P	A	S	T	S	T	P	Q	P	R	P
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?																				?		?	?	?	?	?	?	?	?	?	?	?		?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		E	K	P	V	Y	L	S	V	K	A	D	N	S	M	F	I	G	N	D	P	V	T	D	E	T	M	I	T	A	L	N	A	L	T	E	G	K	K	D	T	T	I	F	F	R	A	D	K	T	V	D	Y	E	T	L	M	K	V	M	D
Secondary structure
SS confidence
Disorder		?	?																																	?			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Sequence		T	L	H	Q	A	G	Y	L	K	I	G	L	V	G	E	E	T	A	K	A	K
Secondary structure
SS confidence
Disorder																?	?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2pfu chain A Region: 44 - 141 Aligned: 98 Modelled: 98 Confidence: 99.8% Identity: 100% PDB header:transport protein Chain: A: PDB Molecule:biopolymer transport exbd protein; PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli Phyre2 PDB 2jwl chain B Region: 61 - 128 Aligned: 68 Modelled: 68 Confidence: 99.4% Identity: 28% PDB header:membrane protein Chain: B: PDB Molecule:protein tolr; PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data Phyre2 PDB 2axt chain K domain 1 Region: 18 - 33 Aligned: 16 Modelled: 16 Confidence: 49.0% Identity: 31% Fold: Single transmembrane helix Superfamily: Photosystem II reaction center protein K, PsbK Family: PsbK-like Phyre2 PDB 3a0b chain K Region: 18 - 33 Aligned: 16 Modelled: 16 Confidence: 45.2% Identity: 31% PDB header:electron transport Chain: K: PDB Molecule:photosystem ii reaction center protein k; PDBTitle: crystal structure of br-substituted photosystem ii complex Phyre2 PDB 3e6e chain C Region: 80 - 138 Aligned: 59 Modelled: 59 Confidence: 35.6% Identity: 10% PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from e.faecalis2 complex with cycloserine Phyre2 PDB 3a0b chain K Region: 18 - 33 Aligned: 16 Modelled: 16 Confidence: 35.2% Identity: 31% PDB header:electron transport Chain: K: PDB Molecule:photosystem ii reaction center protein k; PDBTitle: crystal structure of br-substituted photosystem ii complex Phyre2 PDB 1bd0 chain A domain 2 Region: 81 - 138 Aligned: 58 Modelled: 58 Confidence: 29.5% Identity: 19% Fold: TIM beta/alpha-barrel Superfamily: PLP-binding barrel Family: Alanine racemase-like, N-terminal domain Phyre2 PDB 2jvf chain A Region: 63 - 132 Aligned: 70 Modelled: 70 Confidence: 28.2% Identity: 21% PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein Phyre2 PDB 2re3 chain A Region: 50 - 104 Aligned: 55 Modelled: 55 Confidence: 27.6% Identity: 13% PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution Phyre2 PDB 3a0h chain K Region: 18 - 33 Aligned: 16 Modelled: 16 Confidence: 26.0% Identity: 31% PDB header:electron transport Chain: K: PDB Molecule:photosystem ii reaction center protein k; PDBTitle: crystal structure of i-substituted photosystem ii complex Phyre2 PDB 2e8a chain A domain 1 Region: 83 - 140 Aligned: 57 Modelled: 58 Confidence: 25.1% Identity: 18% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 1jce chain A domain 1 Region: 83 - 140 Aligned: 58 Modelled: 57 Confidence: 25.1% Identity: 16% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 1qys chain A Region: 63 - 132 Aligned: 70 Modelled: 70 Confidence: 22.5% Identity: 17% PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold Phyre2 PDB 1dkg chain D domain 1 Region: 69 - 140 Aligned: 72 Modelled: 72 Confidence: 20.9% Identity: 14% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 1bup chain A domain 1 Region: 83 - 140 Aligned: 57 Modelled: 58 Confidence: 19.8% Identity: 18% Fold: Ribonuclease H-like motif Superfamily: Actin-like ATPase domain Family: Actin/HSP70 Phyre2 PDB 1vfs chain A domain 2 Region: 82 - 138 Aligned: 56 Modelled: 57 Confidence: 19.8% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: PLP-binding barrel Family: Alanine racemase-like, N-terminal domain Phyre2 PDB 1ur8 chain B Region: 66 - 132 Aligned: 67 Modelled: 67 Confidence: 18.4% Identity: 12% PDB header:hydrolase Chain: B: PDB Molecule:chitinase b; PDBTitle: interactions of a family 18 chitinase with the designed2 inhibitor hm508, and its degradation product,3 chitobiono-delta-lactone Phyre2 PDB 3ugs chain B Region: 96 - 132 Aligned: 37 Modelled: 37 Confidence: 18.3% Identity: 11% PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni Phyre2 PDB 1vft chain A Region: 80 - 138 Aligned: 58 Modelled: 59 Confidence: 17.8% Identity: 16% PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae Phyre2 PDB 3ghf chain A Region: 79 - 132 Aligned: 54 Modelled: 54 Confidence: 17.5% Identity: 11% PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium Phyre2 1 c2pfuA_ 2 c2jwlB_ 3 d2axtk1 4 c3a0bK_ 5 c3e6eC_ 6 c3a0bk_ 7 d1bd0a2 8 c2jvfA_ 9 c2re3A_ 10 c3a0hk_ 11 d2e8aa1 12 d1jcea1 13 c1qysA_ 14 d1dkgd1 15 d1bupa1 16 d1vfsa2 17 c1ur8B_ 18 c3ugsB_ 19 c1vftA_ 20 c3ghfA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2pfuA_ 99.8 100 PDB header:transport protein Chain: A: PDB Molecule:biopolymer transport exbd protein; PDBTitle: nmr strcuture determination of the periplasmic domain of exbd from2 e.coli 2 c2jwlB_ 99.4 28 PDB header:membrane protein Chain: B: PDB Molecule:protein tolr; PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data 3 d2axtk1 49.0 31 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein K, PsbK Family:PsbK-like 4 c3a0bK_ 45.2 31 PDB header:electron transport Chain: K: PDB Molecule:photosystem ii reaction center protein k; PDBTitle: crystal structure of br-substituted photosystem ii complex 5 c3e6eC_ 35.6 10 PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from e.faecalis2 complex with cycloserine 6 c3a0bk_ 35.2 31 PDB header:electron transport Chain: K: PDB Molecule:photosystem ii reaction center protein k; PDBTitle: crystal structure of br-substituted photosystem ii complex 7 d1bd0a2 29.5 19 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 8 c2jvfA_ 28.2 21 PDB header:de novo protein Chain: A: PDB Molecule:de novo protein m7; PDBTitle: solution structure of m7, a computationally-designed2 artificial protein 9 c2re3A_ 27.6 13 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of a duf1285 family protein (spo_0140) from2 silicibacter pomeroyi dss-3 at 2.50 a resolution 10 c3a0hk_ 26.0 31 PDB header:electron transport Chain: K: PDB Molecule:photosystem ii reaction center protein k; PDBTitle: crystal structure of i-substituted photosystem ii complex 11 d2e8aa1 25.1 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 12 d1jcea1 25.1 16 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 13 c1qysA_ 22.5 17 PDB header:de novo protein Chain: A: PDB Molecule:top7; PDBTitle: crystal structure of top7: a computationally designed2 protein with a novel fold 14 d1dkgd1 20.9 14 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 15 d1bupa1 19.8 18 Fold:Ribonuclease H-like motif Superfamily:Actin-like ATPase domain Family:Actin/HSP70 16 d1vfsa2 19.8 16 Fold:TIM beta/alpha-barrel Superfamily:PLP-binding barrel Family:Alanine racemase-like, N-terminal domain 17 c1ur8B_ 18.4 12 PDB header:hydrolase Chain: B: PDB Molecule:chitinase b; PDBTitle: interactions of a family 18 chitinase with the designed2 inhibitor hm508, and its degradation product,3 chitobiono-delta-lactone 18 c3ugsB_ 18.3 11 PDB header:transferase Chain: B: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of a probable undecaprenyl diphosphate synthase2 (upps) from campylobacter jejuni 19 c1vftA_ 17.8 16 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: crystal structure of l-cycloserine-bound form of alanine2 racemase from d-cycloserine-producing streptomyces3 lavendulae 20 c3ghfA_ 17.5 11 PDB header:cell cycle Chain: A: PDB Molecule:septum site-determining protein minc; PDBTitle: crystal structure of the septum site-determining protein2 minc from salmonella typhimurium 21 c3co8B_ not modelled 16.6 12 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from oenococcus oeni 22 c3lupA_ not modelled 16.5 18 PDB header:structure genomics, unknown function Chain: A: PDB Molecule:degv family protein; PDBTitle: crystal structure of fatty acid binding degv family protein sag13422 from streptococcus agalactiae 23 c2c2xB_ not modelled 16.3 9 PDB header:oxidoreductase Chain: B: PDB Molecule:methylenetetrahydrofolate dehydrogenase- PDBTitle: three dimensional structure of bifunctional2 methylenetetrahydrofolate dehydrogenase-cyclohydrolase3 from mycobacterium tuberculosis 24 d1edza2 not modelled 16.1 9 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 25 c3me8B_ not modelled 15.8 11 PDB header:electron transport Chain: B: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of putative electron transfer protein aq_2194 from2 aquifex aeolicus vf5 26 c1niuA_ not modelled 15.7 19 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase; PDBTitle: alanine racemase with bound inhibitor derived from l-2 cycloserine 27 d1qyia_ not modelled 14.9 15 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein MW1667 (SA1546) 28 d1goia2 not modelled 14.8 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 29 c3oo2A_ not modelled 13.6 12 PDB header:isomerase Chain: A: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col 30 d2d0oa1 not modelled 12.5 17 Fold:The "swivelling" beta/beta/alpha domain Superfamily:Swiveling domain of dehydratase reactivase alpha subunit Family:Swiveling domain of dehydratase reactivase alpha subunit 31 c3pm6B_ not modelled 12.3 14 PDB header:lyase Chain: B: PDB Molecule:putative fructose-bisphosphate aldolase; PDBTitle: crystal structure of a putative fructose-1,6-biphosphate aldolase from2 coccidioides immitis solved by combined sad mr 32 c3outC_ not modelled 11.9 15 PDB header:isomerase Chain: C: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of glutamate racemase from francisella tularensis2 subsp. tularensis schu s4 in complex with d-glutamate. 33 d1a9xa4 not modelled 11.7 11 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 34 d2j9ga2 not modelled 11.5 7 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 35 c2g7zB_ not modelled 11.4 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved hypothetical protein spy1493; PDBTitle: conserved degv-like protein of unknown function from streptococcus2 pyogenes m1 gas binds long-chain fatty acids 36 c3iprC_ not modelled 10.8 17 PDB header:transferase Chain: C: PDB Molecule:pts system, iia component; PDBTitle: crystal structure of the enterococcus faecalis gluconate2 specific eiia phosphotransferase system component 37 d1b0aa2 not modelled 10.8 4 Fold:Aminoacid dehydrogenase-like, N-terminal domain Superfamily:Aminoacid dehydrogenase-like, N-terminal domain Family:Tetrahydrofolate dehydrogenase/cyclohydrolase 38 d1wd5a_ not modelled 10.8 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 39 c1xfcB_ not modelled 10.7 19 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: the 1.9 a crystal structure of alanine racemase from mycobacterium2 tuberculosis contains a conserved entryway into the active site 40 d2axth1 not modelled 10.5 18 Fold:Single transmembrane helix Superfamily:Photosystem II 10 kDa phosphoprotein PsbH Family:PsbH-like 41 d1ne9a1 not modelled 10.5 18 Fold:Acyl-CoA N-acyltransferases (Nat) Superfamily:Acyl-CoA N-acyltransferases (Nat) Family:FemXAB nonribosomal peptidyltransferases 42 d2p10a1 not modelled 10.0 8 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Mll9387-like 43 c2dy3B_ not modelled 9.9 14 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase; PDBTitle: crystal structure of alanine racemase from corynebacterium glutamicum 44 c2ra9A_ not modelled 9.5 5 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein duf1285; PDBTitle: crystal structure of a duf1285 family protein (sbal_2486) from2 shewanella baltica os155 at 1.40 a resolution 45 c2odoC_ not modelled 9.4 15 PDB header:isomerase Chain: C: PDB Molecule:alanine racemase; PDBTitle: crystal structure of pseudomonas fluorescens alanine racemase 46 d1f75a_ not modelled 9.2 19 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 47 c1p74B_ not modelled 9.2 21 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase (aroe) from2 haemophilus influenzae 48 c3a0hY_ not modelled 8.7 10 PDB header:electron transport Chain: Y: PDB Molecule:photosystem ii reaction center protein ycf12; PDBTitle: crystal structure of i-substituted photosystem ii complex 49 c3bz1y_ not modelled 8.7 10 PDB header:electron transport Chain: Y: PDB Molecule:photosystem ii protein y; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 50 c3a0hy_ not modelled 8.7 10 PDB header:electron transport Chain: Y: PDB Molecule:photosystem ii reaction center protein ycf12; PDBTitle: crystal structure of i-substituted photosystem ii complex 51 c3a0by_ not modelled 8.5 10 PDB header:electron transport Chain: Y: PDB Molecule:photosystem ii reaction center protein ycf12; PDBTitle: crystal structure of br-substituted photosystem ii complex 52 d1gph11 not modelled 8.4 15 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 53 c3arcY_ not modelled 8.3 10 PDB header:electron transport, photosynthesis Chain: Y: PDB Molecule:protein ycf12; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 54 c3arcy_ not modelled 8.3 10 PDB header:electron transport, photosynthesis Chain: Y: PDB Molecule:protein ycf12; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 55 d1gvfa_ not modelled 8.3 19 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 56 c1jp3A_ not modelled 8.0 10 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: structure of e.coli undecaprenyl pyrophosphate synthase 57 d1ecfa1 not modelled 7.9 20 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 58 c3eooL_ not modelled 7.8 15 PDB header:lyase Chain: L: PDB Molecule:methylisocitrate lyase; PDBTitle: 2.9a crystal structure of methyl-isocitrate lyase from2 burkholderia pseudomallei 59 d2nn6d2 not modelled 7.7 8 Fold:Ribonuclease PH domain 2-like Superfamily:Ribonuclease PH domain 2-like Family:Ribonuclease PH domain 2-like 60 d1hgxa_ not modelled 7.6 8 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 61 d1rvga_ not modelled 7.5 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class II FBP aldolase 62 c3qm3C_ not modelled 7.4 9 PDB header:lyase Chain: C: PDB Molecule:fructose-bisphosphate aldolase; PDBTitle: 1.85 angstrom resolution crystal structure of fructose-bisphosphate2 aldolase (fba) from campylobacter jejuni 63 c3gmgB_ not modelled 7.3 26 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein rv1825/mt1873; PDBTitle: crystal structure of an uncharacterized conserved protein2 from mycobacterium tuberculosis 64 c3o8qB_ not modelled 7.2 21 PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase i alpha; PDBTitle: 1.45 angstrom resolution crystal structure of shikimate 5-2 dehydrogenase (aroe) from vibrio cholerae 65 c2vfwB_ not modelled 6.8 14 PDB header:transferase Chain: B: PDB Molecule:short-chain z-isoprenyl diphosphate synthetase; PDBTitle: rv1086 native 66 d1ueha_ not modelled 6.8 10 Fold:Undecaprenyl diphosphate synthase Superfamily:Undecaprenyl diphosphate synthase Family:Undecaprenyl diphosphate synthase 67 d1zhva2 not modelled 6.7 37 Fold:Ferredoxin-like Superfamily:ACT-like Family:Atu0741-like 68 c3gycB_ not modelled 6.7 32 PDB header:hydrolase Chain: B: PDB Molecule:putative glycoside hydrolase; PDBTitle: crystal structure of putative glycoside hydrolase (yp_001304622.1)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution 69 c3a0bY_ not modelled 6.7 10 PDB header:electron transport Chain: Y: PDB Molecule:photosystem ii reaction center protein ycf12; PDBTitle: crystal structure of br-substituted photosystem ii complex 70 d1g8fa3 not modelled 6.7 17 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain 71 c2d2rA_ not modelled 6.2 14 PDB header:transferase Chain: A: PDB Molecule:undecaprenyl pyrophosphate synthase; PDBTitle: crystal structure of helicobacter pylori undecaprenyl pyrophosphate2 synthase 72 c2f40A_ not modelled 6.0 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pf1455; PDBTitle: structure of a novel protein from backbone-centered nmr data and nmr-2 assisted structure prediction 73 d1i5ea_ not modelled 5.8 11 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 74 c2qlxA_ not modelled 5.8 31 PDB header:isomerase Chain: A: PDB Molecule:l-rhamnose mutarotase; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum in complex with l-rhamnose 75 c2qlwA_ not modelled 5.8 31 PDB header:isomerase Chain: A: PDB Molecule:rhau; PDBTitle: crystal structure of rhamnose mutarotase rhau of rhizobium2 leguminosarum 76 c2dcqA_ not modelled 5.8 9 PDB header:unknown function Chain: A: PDB Molecule:putative protein at4g01050; PDBTitle: fully automated nmr structure determination of the2 rhodanese homology domain at4g01050(175-295) from3 arabidopsis thaliana 77 c3oo2B_ not modelled 5.7 16 PDB header:isomerase Chain: B: PDB Molecule:alanine racemase 1; PDBTitle: 2.37 angstrom resolution crystal structure of an alanine racemase2 (alr) from staphylococcus aureus subsp. aureus col 78 d1zzoa1 not modelled 5.7 16 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:Glutathione peroxidase-like 79 d2bz1a1 not modelled 5.5 20 Fold:RibA-like Superfamily:RibA-like Family:RibA-like 80 d1x8da1 not modelled 5.5 13 Fold:Ferredoxin-like Superfamily:Dimeric alpha+beta barrel Family:YiiL-like 81 c1ecjB_ not modelled 5.3 20 PDB header:transferase Chain: B: PDB Molecule:glutamine phosphoribosylpyrophosphate PDBTitle: escherichia coli glutamine phosphoribosylpyrophosphate2 (prpp) amidotransferase complexed with 2 amp per tetramer 82 d1g9sa_ not modelled 5.2 16 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 83 c1yfzA_ not modelled 5.2 14 PDB header:transferase Chain: A: PDB Molecule:hypoxanthine-guanine phosphoribosyltransferase; PDBTitle: novel imp binding in feedback inhibition of hypoxanthine-guanine2 phosphoribosyltransferase from thermoanaerobacter tengcongensis 84 d1yfza1 not modelled 5.2 14 Fold:PRTase-like Superfamily:PRTase-like Family:Phosphoribosyltransferases (PRTases) 85 c3l8cA_ not modelled 5.2 15 PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: structure of probable d-alanine--poly(phosphoribitol) ligase2 subunit-1 from streptococcus pyogenes 86 c3q94B_ not modelled 5.2 12 PDB header:lyase Chain: B: PDB Molecule:fructose-bisphosphate aldolase, class ii; PDBTitle: the crystal structure of fructose 1,6-bisphosphate aldolase from2 bacillus anthracis str. 'ames ancestor' 87 c3navB_ not modelled 5.1 15 PDB header:lyase Chain: B: PDB Molecule:tryptophan synthase alpha chain; PDBTitle: crystal structure of an alpha subunit of tryptophan synthase from2 vibrio cholerae o1 biovar el tor str. n16961 88 d1xd7a_ not modelled 5.1 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Transcriptional regulator Rrf2 89 d1aopa1 not modelled 5.1 15 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3 90 d1ujpa_ not modelled 5.1 9 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes 91 d1ulza2 not modelled 5.1 14 Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like 92 d1rhsa1 not modelled 5.1 10 Fold:Rhodanese/Cell cycle control phosphatase Superfamily:Rhodanese/Cell cycle control phosphatase Family:Multidomain sulfurtransferase (rhodanese) 93 d1zj8a1 not modelled 5.0 14 Fold:Ferredoxin-like Superfamily:Nitrite/Sulfite reductase N-terminal domain-like Family:Duplicated SiR/NiR-like domains 1 and 3

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0