Secondary structure and disorder prediction

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Sequence		M	A	L	L	D	F	F	L	S	R	K	K	N	T	A	N	I	A	K	E	R	L	Q	I	I	V	A	E	R	R	R	S	D	A	E	P	H	Y	L	P	Q	L	R	K	D	I	L	E	V	I	C	K	Y	V	Q	I	D	P	E	M
Secondary structure
SS confidence
Disorder		?	?						?	?	?	?	?	?	?																				?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Sequence		V	T	V	Q	L	E	Q	K	D	G	D	I	S	I	L	E	L	N	V	T	L	P	E	A	E	E	L	K
Secondary structure
SS confidence
Disorder								?	?	?														?	?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2kxo chain A Region: 1 - 87 Aligned: 86 Modelled: 87 Confidence: 100.0% Identity: 42% PDB header:cell cycle Chain: A: PDB Molecule:cell division topological specificity factor; PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae Phyre2 PDB 3r9j chain D Region: 13 - 82 Aligned: 70 Modelled: 70 Confidence: 99.9% Identity: 99% PDB header:cell cycle,hydrolase/cell cycle Chain: D: PDB Molecule:cell division topological specificity factor; PDBTitle: 4.3a resolution structure of a mind-mine(i24n) protein complex Phyre2 PDB 1ev0 chain A Region: 30 - 88 Aligned: 58 Modelled: 59 Confidence: 99.6% Identity: 100% Fold: Cell division protein MinE topological specificity domain Superfamily: Cell division protein MinE topological specificity domain Family: Cell division protein MinE topological specificity domain Phyre2 PDB 3ku7 chain B Region: 18 - 82 Aligned: 57 Modelled: 65 Confidence: 98.8% Identity: 33% PDB header:cell cycle Chain: B: PDB Molecule:cell division topological specificity factor; PDBTitle: crystal structure of helicobacter pylori mine, a cell division2 topological specificity factor Phyre2 PDB 3r9i chain G Region: 13 - 25 Aligned: 13 Modelled: 13 Confidence: 88.6% Identity: 100% PDB header:cell cycle,hydrolase/cell cycle Chain: G: PDB Molecule:cell division topological specificity factor; PDBTitle: 2.6a resolution structure of mind complexed with mine (12-31) peptide Phyre2 PDB 3r9i chain H Region: 13 - 26 Aligned: 14 Modelled: 14 Confidence: 85.9% Identity: 100% PDB header:cell cycle,hydrolase/cell cycle Chain: H: PDB Molecule:cell division topological specificity factor; PDBTitle: 2.6a resolution structure of mind complexed with mine (12-31) peptide Phyre2 PDB 3r9i chain E Region: 13 - 26 Aligned: 14 Modelled: 14 Confidence: 85.9% Identity: 100% PDB header:cell cycle,hydrolase/cell cycle Chain: E: PDB Molecule:cell division topological specificity factor; PDBTitle: 2.6a resolution structure of mind complexed with mine (12-31) peptide Phyre2 PDB 3r9i chain F Region: 13 - 26 Aligned: 14 Modelled: 14 Confidence: 85.9% Identity: 100% PDB header:cell cycle,hydrolase/cell cycle Chain: F: PDB Molecule:cell division topological specificity factor; PDBTitle: 2.6a resolution structure of mind complexed with mine (12-31) peptide Phyre2 PDB 2kwp chain A Region: 26 - 86 Aligned: 58 Modelled: 61 Confidence: 75.9% Identity: 17% PDB header:transcription Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: solution structure of the aminoterminal domain of e. coli nusa Phyre2 PDB 1hh2 chain P domain 4 Region: 26 - 86 Aligned: 58 Modelled: 61 Confidence: 74.7% Identity: 21% Fold: Transcription factor NusA, N-terminal domain Superfamily: Transcription factor NusA, N-terminal domain Family: Transcription factor NusA, N-terminal domain Phyre2 PDB 3eps chain B Region: 5 - 45 Aligned: 41 Modelled: 41 Confidence: 55.7% Identity: 22% PDB header:transferase, hydrolase Chain: B: PDB Molecule:isocitrate dehydrogenase kinase/phosphatase; PDBTitle: the crystal structure of isocitrate dehydrogenase kinase/phosphatase2 from e. coli Phyre2 PDB 2r40 chain D domain 1 Region: 24 - 55 Aligned: 32 Modelled: 32 Confidence: 36.5% Identity: 16% Fold: Nuclear receptor ligand-binding domain Superfamily: Nuclear receptor ligand-binding domain Family: Nuclear receptor ligand-binding domain Phyre2 PDB 1vma chain A domain 1 Region: 1 - 48 Aligned: 45 Modelled: 47 Confidence: 33.7% Identity: 16% Fold: Four-helical up-and-down bundle Superfamily: Domain of the SRP/SRP receptor G-proteins Family: Domain of the SRP/SRP receptor G-proteins Phyre2 PDB 1rwu chain A Region: 40 - 87 Aligned: 46 Modelled: 48 Confidence: 31.6% Identity: 20% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli Phyre2 PDB 1rwu chain A Region: 40 - 87 Aligned: 46 Modelled: 48 Confidence: 31.6% Identity: 20% Fold: Ferredoxin-like Superfamily: YbeD/HP0495-like Family: YbeD-like Phyre2 PDB 2qw4 chain A domain 1 Region: 24 - 55 Aligned: 32 Modelled: 32 Confidence: 31.4% Identity: 19% Fold: Nuclear receptor ligand-binding domain Superfamily: Nuclear receptor ligand-binding domain Family: Nuclear receptor ligand-binding domain Phyre2 PDB 2nxx chain G Region: 24 - 55 Aligned: 32 Modelled: 32 Confidence: 30.9% Identity: 22% PDB header:hormone/growth factor Chain: G: PDB Molecule:ecdysone receptor (ecr, nrh1); PDBTitle: crystal structure of the ligand-binding domains of the2 t.castaneum (coleoptera) heterodimer ecrusp bound to3 ponasterone a Phyre2 PDB 3ctb chain A Region: 24 - 55 Aligned: 32 Modelled: 32 Confidence: 28.7% Identity: 16% PDB header:transcription, transferase Chain: A: PDB Molecule:pregnane x receptor, linker, steroid receptor PDBTitle: tethered pxr-lbd/src-1p apoprotein Phyre2 PDB 1ovl chain E Region: 24 - 55 Aligned: 32 Modelled: 29 Confidence: 22.5% Identity: 19% Fold: Nuclear receptor ligand-binding domain Superfamily: Nuclear receptor ligand-binding domain Family: Nuclear receptor ligand-binding domain Phyre2 PDB 1nrl chain A Region: 24 - 55 Aligned: 32 Modelled: 32 Confidence: 21.9% Identity: 16% PDB header:transcription Chain: A: PDB Molecule:orphan nuclear receptor pxr; PDBTitle: crystal structure of the human pxr-lbd in complex with an2 src-1 coactivator peptide and sr12813 Phyre2 1 c2kxoA_ 2 c3r9jD_ 3 d1ev0a_ 4 c3ku7B_ 5 c3r9iG_ 6 c3r9iH_ 7 c3r9iE_ 8 c3r9iF_ 9 c2kwpA_ 10 d1hh2p4 11 c3epsB_ 12 d2r40d1 13 d1vmaa1 14 c1rwuA_ 15 d1rwua_ 16 d2qw4a1 17 c2nxxG_ 18 c3ctbA_ 19 d1ovle_ 20 c1nrlA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2kxoA_ 100.0 42 PDB header:cell cycle Chain: A: PDB Molecule:cell division topological specificity factor; PDBTitle: solution nmr structure of the cell division regulator mine protein2 from neisseria gonorrhoeae 2 c3r9jD_ 99.9 99 PDB header:cell cycle,hydrolase/cell cycle Chain: D: PDB Molecule:cell division topological specificity factor; PDBTitle: 4.3a resolution structure of a mind-mine(i24n) protein complex 3 d1ev0a_ 99.6 100 Fold:Cell division protein MinE topological specificity domain Superfamily:Cell division protein MinE topological specificity domain Family:Cell division protein MinE topological specificity domain 4 c3ku7B_ 98.8 33 PDB header:cell cycle Chain: B: PDB Molecule:cell division topological specificity factor; PDBTitle: crystal structure of helicobacter pylori mine, a cell division2 topological specificity factor 5 c3r9iG_ 88.6 100 PDB header:cell cycle,hydrolase/cell cycle Chain: G: PDB Molecule:cell division topological specificity factor; PDBTitle: 2.6a resolution structure of mind complexed with mine (12-31) peptide 6 c3r9iH_ 85.9 100 PDB header:cell cycle,hydrolase/cell cycle Chain: H: PDB Molecule:cell division topological specificity factor; PDBTitle: 2.6a resolution structure of mind complexed with mine (12-31) peptide 7 c3r9iE_ 85.9 100 PDB header:cell cycle,hydrolase/cell cycle Chain: E: PDB Molecule:cell division topological specificity factor; PDBTitle: 2.6a resolution structure of mind complexed with mine (12-31) peptide 8 c3r9iF_ 85.9 100 PDB header:cell cycle,hydrolase/cell cycle Chain: F: PDB Molecule:cell division topological specificity factor; PDBTitle: 2.6a resolution structure of mind complexed with mine (12-31) peptide 9 c2kwpA_ 75.9 17 PDB header:transcription Chain: A: PDB Molecule:transcription elongation protein nusa; PDBTitle: solution structure of the aminoterminal domain of e. coli nusa 10 d1hh2p4 74.7 21 Fold:Transcription factor NusA, N-terminal domain Superfamily:Transcription factor NusA, N-terminal domain Family:Transcription factor NusA, N-terminal domain 11 c3epsB_ 55.7 22 PDB header:transferase, hydrolase Chain: B: PDB Molecule:isocitrate dehydrogenase kinase/phosphatase; PDBTitle: the crystal structure of isocitrate dehydrogenase kinase/phosphatase2 from e. coli 12 d2r40d1 36.5 16 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 13 d1vmaa1 33.7 16 Fold:Four-helical up-and-down bundle Superfamily:Domain of the SRP/SRP receptor G-proteins Family:Domain of the SRP/SRP receptor G-proteins 14 c1rwuA_ 31.6 20 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical upf0250 protein ybed; PDBTitle: solution structure of conserved protein ybed from e. coli 15 d1rwua_ 31.6 20 Fold:Ferredoxin-like Superfamily:YbeD/HP0495-like Family:YbeD-like 16 d2qw4a1 31.4 19 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 17 c2nxxG_ 30.9 22 PDB header:hormone/growth factor Chain: G: PDB Molecule:ecdysone receptor (ecr, nrh1); PDBTitle: crystal structure of the ligand-binding domains of the2 t.castaneum (coleoptera) heterodimer ecrusp bound to3 ponasterone a 18 c3ctbA_ 28.7 16 PDB header:transcription, transferase Chain: A: PDB Molecule:pregnane x receptor, linker, steroid receptor PDBTitle: tethered pxr-lbd/src-1p apoprotein 19 d1ovle_ 22.5 19 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 20 c1nrlA_ 21.9 16 PDB header:transcription Chain: A: PDB Molecule:orphan nuclear receptor pxr; PDBTitle: crystal structure of the human pxr-lbd in complex with an2 src-1 coactivator peptide and sr12813 21 d1nrla_ not modelled 21.9 16 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 22 d1nq7a_ not modelled 21.6 19 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 23 c3hm5A_ not modelled 21.4 14 PDB header:transcription Chain: A: PDB Molecule:dna methyltransferase 1-associated protein 1; PDBTitle: sant domain of human dna methyltransferase 1 associated2 protein 1 24 d1d0qa_ not modelled 20.2 32 Fold:Rubredoxin-like Superfamily:Zinc beta-ribbon Family:DNA primase zinc finger 25 c1z5xE_ not modelled 20.1 22 PDB header:hormone/growth factor receptor Chain: E: PDB Molecule:ecdysone receptor ligand binding domain; PDBTitle: hemipteran ecdysone receptor ligand-binding domain2 complexed with ponasterone a 26 c3pvpA_ not modelled 20.0 17 PDB header:dna binding protein/dna Chain: A: PDB Molecule:chromosomal replication initiator protein dnaa; PDBTitle: structure of mycobacterium tuberculosis dnaa-dbd in complex with box22 dna 27 d1j1va_ not modelled 19.5 17 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV 28 d1go3f_ not modelled 19.3 33 Fold:SAM domain-like Superfamily:HRDC-like Family:RNA polymerase II subunit RBP4 (RpoF) 29 c2dnwA_ not modelled 18.4 32 PDB header:transport protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: solution structure of rsgi ruh-059, an acp domain of acyl2 carrier protein, mitochondrial [precursor] from human cdna 30 d1ovla_ not modelled 17.8 19 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 31 d1pdua_ not modelled 17.6 22 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 32 d1n83a_ not modelled 17.4 16 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 33 c2qw4D_ not modelled 17.3 19 PDB header:hormone receptor Chain: D: PDB Molecule:orphan nuclear receptor nr4a1; PDBTitle: human nr4a1 ligand-binding domain 34 c1xdkF_ not modelled 16.1 22 PDB header:hormone/growth factor receptor Chain: F: PDB Molecule:retinoic acid receptor, beta; PDBTitle: crystal structure of the rarbeta/rxralpha ligand binding2 domain heterodimer in complex with 9-cis retinoic acid and3 a fragment of the trap220 coactivator 35 d1pq9a_ not modelled 15.8 22 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 36 d1osva_ not modelled 15.1 19 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 37 d1nava_ not modelled 13.6 13 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 38 d1l8qa1 not modelled 13.6 22 Fold:DNA/RNA-binding 3-helical bundle Superfamily:TrpR-like Family:Chromosomal replication initiation factor DnaA C-terminal domain IV 39 c3up0A_ not modelled 13.1 6 PDB header:steroid binding protein/transcription Chain: A: PDB Molecule:acedaf-12; PDBTitle: nuclear receptor daf-12 from hookworm ancylostoma ceylanicum in2 complex with (25s)-delta7-dafachronic acid 40 c3pt8B_ not modelled 13.1 7 PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin iii; PDBTitle: structure of hbii-iii-cn from lucina pectinata at ph 5.0 41 c2c0kB_ not modelled 13.0 19 PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin; PDBTitle: the structure of hemoglobin from the botfly gasterophilus2 intestinalis 42 c3l0jA_ not modelled 12.6 13 PDB header:transcription Chain: A: PDB Molecule:nuclear receptor ror-gamma; PDBTitle: crystal structure of orphan nuclear receptor rorgamma in complex with2 natural ligand 43 c2rhfA_ not modelled 12.4 14 PDB header:hydrolase Chain: A: PDB Molecule:dna helicase recq; PDBTitle: d. radiodurans recq hrdc domain 3 44 d1ie9a_ not modelled 12.4 13 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 45 c2hc4A_ not modelled 12.1 13 PDB header:gene regulation Chain: A: PDB Molecule:vitamin d receptor; PDBTitle: crystal structure of the lbd of vdr of danio rerio in2 complex with calcitriol 46 d1ghha_ not modelled 11.6 18 Fold:DNA damage-inducible protein DinI Superfamily:DNA damage-inducible protein DinI Family:DNA damage-inducible protein DinI 47 d1sqna_ not modelled 11.2 6 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 48 c2oaxC_ not modelled 10.7 10 PDB header:transcription Chain: C: PDB Molecule:mineralocorticoid receptor; PDBTitle: crystal structure of the s810l mutant mineralocorticoid2 receptor associated with sc9420 49 c3lbdA_ not modelled 10.6 22 PDB header:nuclear receptor Chain: A: PDB Molecule:retinoic acid receptor gamma; PDBTitle: ligand-binding domain of the human retinoic acid receptor2 gamma bound to 9-cis retinoic acid 50 d1x9fb_ not modelled 10.5 21 Fold:Globin-like Superfamily:Globin-like Family:Globins 51 c3vhuA_ not modelled 10.4 10 PDB header:transcription/inhibitor Chain: A: PDB Molecule:mineralocorticoid receptor; PDBTitle: mineralocorticoid receptor ligand-binding domain with spironolactone 52 c1p93A_ not modelled 10.4 6 PDB header:hormone receptor Chain: A: PDB Molecule:glucocorticoid receptor; PDBTitle: crystal structure of the agonist form of glucocorticoid2 receptor 53 c2o4rA_ not modelled 10.0 13 PDB header:hormone/growth factor receptor Chain: A: PDB Molecule:vitamin d3 receptor; PDBTitle: crystal structure of rat vitamin d receptor ligand binding2 domain complexed with vitiii 17-20e and the nr2 box of3 drip 205 54 c3gdzA_ not modelled 9.5 11 PDB header:ligase Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of arginyl-trna synthetase from klebsiella2 pneumoniae subsp. pneumoniae 55 d1xapa_ not modelled 8.9 22 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 56 d1xvpb_ not modelled 8.8 13 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 57 d3proc1 not modelled 8.6 18 Fold:Alpha-lytic protease prodomain-like Superfamily:Alpha-lytic protease prodomain Family:Alpha-lytic protease prodomain 58 d1itha_ not modelled 8.5 23 Fold:Globin-like Superfamily:Globin-like Family:Globins 59 c2olpB_ not modelled 8.5 5 PDB header:oxygen storage/transport Chain: B: PDB Molecule:hemoglobin ii; PDBTitle: structure and ligand selection of hemoglobin ii from lucina pectinata 60 c3ifeA_ not modelled 8.4 26 PDB header:hydrolase Chain: A: PDB Molecule:peptidase t; PDBTitle: 1.55 angstrom resolution crystal structure of peptidase t (pept-1)2 from bacillus anthracis str. 'ames ancestor'. 61 c3abfB_ not modelled 8.2 21 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of a 4-oxalocrotonate tautomerase homologue2 (tthb242) 62 d2zmia1 not modelled 8.2 13 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 63 d2b50a1 not modelled 8.2 15 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 64 c3q9qB_ not modelled 7.8 29 PDB header:chaperone Chain: B: PDB Molecule:heat shock protein beta-1; PDBTitle: hspb1 fragment second crystal form 65 d1mbaa_ not modelled 7.7 9 Fold:Globin-like Superfamily:Globin-like Family:Globins 66 d2ia7a1 not modelled 7.4 11 Fold:gpW/gp25-like Superfamily:gpW/gp25-like Family:gpW/gp25-like 67 d2dgxa1 not modelled 7.1 15 Fold:Ferredoxin-like Superfamily:RNA-binding domain, RBD Family:Canonical RBD 68 c2x4kB_ not modelled 7.0 15 PDB header:isomerase Chain: B: PDB Molecule:4-oxalocrotonate tautomerase; PDBTitle: crystal structure of sar1376, a putative 4-oxalocrotonate2 tautomerase from the methicillin-resistant staphylococcus3 aureus (mrsa) 69 c1usdA_ not modelled 6.9 21 PDB header:signaling protein Chain: A: PDB Molecule:vasodilator-stimulated phosphoprotein; PDBTitle: human vasp tetramerisation domain l352m 70 c2rqlA_ not modelled 6.7 8 PDB header:translation Chain: A: PDB Molecule:probable sigma-54 modulation protein; PDBTitle: solution structure of the e. coli ribosome hibernation2 promoting factor hpf 71 c3mb2G_ not modelled 6.7 6 PDB header:isomerase Chain: G: PDB Molecule:4-oxalocrotonate tautomerase family enzyme - alpha subunit; PDBTitle: kinetic and structural characterization of a heterohexamer 4-2 oxalocrotonate tautomerase from chloroflexus aurantiacus j-10-fl:3 implications for functional and structural diversity in the4 tautomerase superfamily 72 d1bjpa_ not modelled 6.4 15 Fold:Tautomerase/MIF Superfamily:Tautomerase/MIF Family:4-oxalocrotonate tautomerase-like 73 d1wuda1 not modelled 6.3 21 Fold:SAM domain-like Superfamily:HRDC-like Family:HRDC domain from helicases 74 d1lhta_ not modelled 6.2 20 Fold:Globin-like Superfamily:Globin-like Family:Globins 75 d1vkua_ not modelled 6.2 22 Fold:Acyl carrier protein-like Superfamily:ACP-like Family:Acyl-carrier protein (ACP) 76 c3idwA_ not modelled 6.2 15 PDB header:endocytosis Chain: A: PDB Molecule:actin cytoskeleton-regulatory complex protein sla1; PDBTitle: crystal structure of sla1 homology domain 2 77 c2zs0A_ not modelled 6.1 11 PDB header:oxygen storage, oxygen transport Chain: A: PDB Molecule:extracellular giant hemoglobin major globin subunit a1; PDBTitle: structural basis for the heterotropic and homotropic interactions of2 invertebrate giant hemoglobin 78 c2iz2A_ not modelled 6.1 9 PDB header:dna binding protein Chain: A: PDB Molecule:nuclear hormone receptor ftz-f1; PDBTitle: crystal structure of the ligand binding domain of fushi2 tarazu factor 1 from drosophila melanogaster 79 d2fvja1 not modelled 6.0 11 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 80 d1oj6a_ not modelled 5.9 9 Fold:Globin-like Superfamily:Globin-like Family:Globins 81 c2yruA_ not modelled 5.8 7 PDB header:apoptosis Chain: A: PDB Molecule:steroid receptor rna activator 1; PDBTitle: solution structure of mouse steroid receptor rna activator2 1 (sra1) protein 82 d1d02a_ not modelled 5.8 28 Fold:Restriction endonuclease-like Superfamily:Restriction endonuclease-like Family:Restriction endonuclease MunI 83 d2qssa1 not modelled 5.8 11 Fold:Globin-like Superfamily:Globin-like Family:Globins 84 c3tqmD_ not modelled 5.7 19 PDB header:protein binding Chain: D: PDB Molecule:ribosome-associated factor y; PDBTitle: structure of an ribosomal subunit interface protein from coxiella2 burnetii 85 c2ehtA_ not modelled 5.5 24 PDB header:lipid transport Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: crystal structure of acyl carrier protein from aquifex aeolicus (form2 2) 86 d1sctb_ not modelled 5.5 10 Fold:Globin-like Superfamily:Globin-like Family:Globins 87 d1l4sa_ not modelled 5.5 10 Fold:Ribosome binding protein Y (YfiA homologue) Superfamily:Ribosome binding protein Y (YfiA homologue) Family:Ribosome binding protein Y (YfiA homologue) 88 c2op8A_ not modelled 5.4 15 PDB header:isomerase Chain: A: PDB Molecule:probable tautomerase ywhb; PDBTitle: crystal structure of ywhb- homologue of 4-oxalocrotonate tautomerase 89 d1t7ra_ not modelled 5.4 6 Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain 90 c2qnwA_ not modelled 5.3 13 PDB header:signaling protein Chain: A: PDB Molecule:acyl carrier protein; PDBTitle: toxoplasma gondii apicoplast-targeted acyl carrier protein 91 d2qssb1 not modelled 5.3 6 Fold:Globin-like Superfamily:Globin-like Family:Globins 92 c3gyuA_ not modelled 5.2 10 PDB header:transcription Chain: A: PDB Molecule:nuclear hormone receptor of the steroid/thyroid PDBTitle: nuclear receptor daf-12 from parasitic nematode2 strongyloides stercoralis in complex with its physiological3 ligand dafachronic acid delta 7 93 d1v4wb_ not modelled 5.1 15 Fold:Globin-like Superfamily:Globin-like Family:Globins 94 d2htja1 not modelled 5.1 25 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FaeA-like 95 d1fsla_ not modelled 5.1 10 Fold:Globin-like Superfamily:Globin-like Family:Globins 96 c2zufA_ not modelled 5.0 12 PDB header:ligase/rna Chain: A: PDB Molecule:arginyl-trna synthetase; PDBTitle: crystal structure of pyrococcus horikoshii arginyl-trna2 synthetase complexed with trna(arg)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0