PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3gyuA_

Fold library id	PDB Header	Molecule	Title
c3gyuA_	PDB header: transcription	Chain: A: PDB Molecule: nuclear hormone receptor of the steroid/thyroid	PDBTitle: nuclear receptor daf-12 from parasitic nematode2 strongyloides stercoralis in complex with its physiological3 ligand dafachronic acid delta 7

Links to external resources
Added to library: Sat Aug 28 16:21:15 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y T L S E K D L K E L D S I R D S F Q C X N E P L D N D Q Q A S T L A K K E H N P T D I L N V X D I T X R R L V K X A K R L G A F N E I S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T S
S
S
T
T T G G G S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A G K F S L L K G G X I E X L T I R G V T V F N A D K G V W Q T P V D G H S Q I S F N X F D K L R P D I K D T Q K K G F L H F F N L L H S D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
T T S T T
G G G G G G S
T T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V R K N D L A I D I I V L X V L F D S K R E G L V S Q Q D K E T V E K L H R N Y E S L L H R Y L Y S I H K E E A E Q R F A S I P K A L V A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S T T
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . .

Sequence R K V A E N A V T L F L G A G N T T E A A S L P K E F F A T N Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T T T S
T T S
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	T	L	S	E	K	D	L	K	E	L	D	S	I	R	D	S	F	Q	C	X	N	E	P	L	D	N	D	Q	Q	A	S	T	L	A	K	K	E	H	N	P	T	D	I	L	N	V	X	D	I	T	X	R	R	L	V	K	X	A	K	R	L	G	A	F	N	E	I	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		G	G	G	T	S				S											S																								T		T	T	G	G	G	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	G	K	F	S	L	L	K	G	G	X	I	E	X	L	T	I	R	G	V	T	V	F	N	A	D	K	G	V	W	Q	T	P	V	D	G	H	S	Q	I	S	F	N	X	F	D	K	L	R	P	D	I	K	D	T	Q	K	K	G	F	L	H	F	F	N	L	L	H	S	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T			T	T	T	T					T	T	S	T	T					G	G	G	G	G	G	S		T	T	T														T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	R	K	N	D	L	A	I	D	I	I	V	L	X	V	L	F	D	S	K	R	E	G	L	V	S	Q	Q	D	K	E	T	V	E	K	L	H	R	N	Y	E	S	L	L	H	R	Y	L	Y	S	I	H	K	E	E	A	E	Q	R	F	A	S	I	P	K	A	L	V	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S		T	T	S	T	T																														G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Sequence	R	K	V	A	E	N	A	V	T	L	F	L	G	A	G	N	T	T	E	A	A	S	L	P	K	E	F	F	A	T	N	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	T	T	T	T	T	T	S				T	T	S						T	T	S