PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2qw4D_

Fold library id	PDB Header	Molecule	Title
c2qw4D_	PDB header: hormone receptor	Chain: D: PDB Molecule: orphan nuclear receptor nr4a1;	PDBTitle: human nr4a1 ligand-binding domain

Links to external resources
Added to library: Tue Mar 16 12:16:37 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N L L T S L V R A H L D S G P S T A K L D Y S K F Q E L V L P H F G K E D A G D V Q Q F Y D L L S G S L E V I R K W A E K I P G F A E L S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T T
B
T T
S S
S
T S T T T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A D Q D L L L E S A F L E L F I L R L A Y R S K P G E G K L I F C S G L V L H R L Q C A R G F G D W I D S I L A F S R S L H S L L V D V P A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S B T T T T
T T S B T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence F A C L S A L V L I T D R H G L Q E P R R V E E L Q N R I A S C L K E H V A A V S C L S R L L G K L P E L R T L C T Q G L Q R I F Y L K L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
S S
T T

. . . . . . . . . 220 . . . . . . .

Sequence D L V P P P P I I D K I F M D T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	L	L	T	S	L	V	R	A	H	L	D	S	G	P	S	T	A	K	L	D	Y	S	K	F	Q	E	L	V	L	P	H	F	G	K	E	D	A	G	D	V	Q	Q	F	Y	D	L	L	S	G	S	L	E	V	I	R	K	W	A	E	K	I	P	G	F	A	E	L	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	S			T	T	T		B		T	T					S	S				S																											T	S	T	T	T	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	D	Q	D	L	L	L	E	S	A	F	L	E	L	F	I	L	R	L	A	Y	R	S	K	P	G	E	G	K	L	I	F	C	S	G	L	V	L	H	R	L	Q	C	A	R	G	F	G	D	W	I	D	S	I	L	A	F	S	R	S	L	H	S	L	L	V	D	V	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T													S	B	T	T	T	T					T	T	S	B												T	T															T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	F	A	C	L	S	A	L	V	L	I	T	D	R	H	G	L	Q	E	P	R	R	V	E	E	L	Q	N	R	I	A	S	C	L	K	E	H	V	A	A	V	S	C	L	S	R	L	L	G	K	L	P	E	L	R	T	L	C	T	Q	G	L	Q	R	I	F	Y	L	K	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S			T	T		S	S																																																			T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	D	L	V	P	P	P	P	I	I	D	K	I	F	M	D	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S