PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2hc4A_

Fold library id	PDB Header	Molecule	Title
c2hc4A_	PDB header: gene regulation	Chain: A: PDB Molecule: vitamin d receptor;	PDBTitle: crystal structure of the lbd of vdr of danio rerio in2 complex with calcitriol

Links to external resources
Added to library: Tue Mar 16 13:09:41 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H M L S D E Q M Q I I N S L V E A H H K T Y D D S Y S D F V R F R P P V R R L S M L P H L A D L V S Y S I Q K V I G F A K M I P G F R D L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
G G G G G S
T T T T S T T T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A E D Q I A L L K S S A I E I I M L R S N Q S F S L E D M S W S C G G P D F K Y C I N D V T K A G H T L E L L E P L V K F Q V G L K K L K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T T T T T
S S S T T
T T T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H E E E H V L L M A I C L L S P D R P G V Q D H V R I E A L Q D R L C D V L Q A Y I R I Q H P G G R L L Y A K M I Q K L A D L R S L N E E H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
S T T
S
T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . .

Sequence S K Q Y R S L S F Q P E H S M Q L T P L V L E V F G S E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	M	L	S	D	E	Q	M	Q	I	I	N	S	L	V	E	A	H	H	K	T	Y	D	D	S	Y	S	D	F	V	R	F	R	P	P	V	R	R	L	S	M	L	P	H	L	A	D	L	V	S	Y	S	I	Q	K	V	I	G	F	A	K	M	I	P	G	F	R	D	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T	T			T	T		G	G	G	G	G	S								T	T																				T	T	S	T	T	T	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	E	D	Q	I	A	L	L	K	S	S	A	I	E	I	I	M	L	R	S	N	Q	S	F	S	L	E	D	M	S	W	S	C	G	G	P	D	F	K	Y	C	I	N	D	V	T	K	A	G	H	T	L	E	L	L	E	P	L	V	K	F	Q	V	G	L	K	K	L	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				G	G	G	T			T	T	T	T					S	S	S	T	T									T	T	T																		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	E	E	E	H	V	L	L	M	A	I	C	L	L	S	P	D	R	P	G	V	Q	D	H	V	R	I	E	A	L	Q	D	R	L	C	D	V	L	Q	A	Y	I	R	I	Q	H	P	G	G	R	L	L	Y	A	K	M	I	Q	K	L	A	D	L	R	S	L	N	E	E	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T		S		S	T	T		S																									T	T		T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Sequence	S	K	Q	Y	R	S	L	S	F	Q	P	E	H	S	M	Q	L	T	P	L	V	L	E	V	F	G	S	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S								S	S	S