PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3up0A_

Fold library id	PDB Header	Molecule	Title
c3up0A_	PDB header: steroid binding protein/transcription	Chain: A: PDB Molecule: acedaf-12;	PDBTitle: nuclear receptor daf-12 from hookworm ancylostoma ceylanicum in2 complex with (25s)-delta7-dafachronic acid

Links to external resources
Added to library: Sat Dec 17 18:00:25 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S Y Q L N A A E L Q A L D L I Q E A F K G M N D P M E Q G R Q A T S F L K N E K S P A D I M N I M D V T M R R F V K M A K R L P A F N D L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T
S S
S S
T
T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q D G K F A L L K G G M I E M L T V R G V R R F D S S S G S W T T P T L G E S S E V S I N M F D Q L N A D V R S E Q K M R F L Q F F K I F H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
T T S
T T S
G G G G G G S
T T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E D I R S N D L V I S M I M L I V L F S P R D S I T D P E D R R I I A R H H E Q F S A L L N R Y L E S L Y G D D A H Q L N E Q L P T A L R M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . .

Sequence L R E I S A S S G M L F L G T V N T S E A E P L P R E F F K V E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T S
G G G S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	Y	Q	L	N	A	A	E	L	Q	A	L	D	L	I	Q	E	A	F	K	G	M	N	D	P	M	E	Q	G	R	Q	A	T	S	F	L	K	N	E	K	S	P	A	D	I	M	N	I	M	D	V	T	M	R	R	F	V	K	M	A	K	R	L	P	A	F	N	D	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																	T	T	T	T					S	S									S	S																							T						T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	D	G	K	F	A	L	L	K	G	G	M	I	E	M	L	T	V	R	G	V	R	R	F	D	S	S	S	G	S	W	T	T	P	T	L	G	E	S	S	E	V	S	I	N	M	F	D	Q	L	N	A	D	V	R	S	E	Q	K	M	R	F	L	Q	F	F	K	I	F	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										T	T	T	T					T	T	S		T	T	S				G	G	G	G	G	G	S		T	T	T														T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	D	I	R	S	N	D	L	V	I	S	M	I	M	L	I	V	L	F	S	P	R	D	S	I	T	D	P	E	D	R	R	I	I	A	R	H	H	E	Q	F	S	A	L	L	N	R	Y	L	E	S	L	Y	G	D	D	A	H	Q	L	N	E	Q	L	P	T	A	L	R	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T														S				T	T																														G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Sequence	L	R	E	I	S	A	S	S	G	M	L	F	L	G	T	V	N	T	S	E	A	E	P	L	P	R	E	F	F	K	V	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T	T	T	T	S			G	G	G	S								S