PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1xdkF_

Fold library id	PDB Header	Molecule	Title
c1xdkF_	PDB header: hormone/growth factor receptor	Chain: F: PDB Molecule: retinoic acid receptor, beta;	PDBTitle: crystal structure of the rarbeta/rxralpha ligand binding2 domain heterodimer in complex with 9-cis retinoic acid and3 a fragment of the trap220 coactivator

Links to external resources
Added to library: Tue Mar 16 12:26:02 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A E L D D L T E K I R K A H Q E T F P S L C Q L G K Y T T N S S A D H R V R L D L G L W D K F S E L A T K C I I K I V E F A K R L P G F T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
S S S S
B
T T
S S
S
T S T T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L T I A D Q I T L L K A A C L D I L I L R I C T R Y T P E Q D T M T F S D G L T L N R T Q M H N A G F G P L T D L V F T F A N Q L L P L E M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T T T
T T
B T T T G G G G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D D T E T G L L S A I C L I C G D R Q D L E E P T K V D K L Q E P L L E A L K I Y I R K R R P S K P H M F P K I L M K I T D L R S I S A K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S S S
S S T
T T
T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . .

Sequence A E R V I T L K M E I P G S M P P L I Q E M L E N S E G H E P L T P S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	E	L	D	D	L	T	E	K	I	R	K	A	H	Q	E	T	F	P	S	L	C	Q	L	G	K	Y	T	T	N	S	S	A	D	H	R	V	R	L	D	L	G	L	W	D	K	F	S	E	L	A	T	K	C	I	I	K	I	V	E	F	A	K	R	L	P	G	F	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T															S			S	S	S	S			B				T	T		S	S			S																										T	S	T	T	T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	T	I	A	D	Q	I	T	L	L	K	A	A	C	L	D	I	L	I	L	R	I	C	T	R	Y	T	P	E	Q	D	T	M	T	F	S	D	G	L	T	L	N	R	T	Q	M	H	N	A	G	F	G	P	L	T	D	L	V	F	T	F	A	N	Q	L	L	P	L	E	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																							T	T			T	T	T	T					T	T		B										T	T	T	G	G	G												G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	D	T	E	T	G	L	L	S	A	I	C	L	I	C	G	D	R	Q	D	L	E	E	P	T	K	V	D	K	L	Q	E	P	L	L	E	A	L	K	I	Y	I	R	K	R	R	P	S	K	P	H	M	F	P	K	I	L	M	K	I	T	D	L	R	S	I	S	A	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S		S		S	S	S		S	S								T																T	T		T	T							T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Sequence	A	E	R	V	I	T	L	K	M	E	I	P	G	S	M	P	P	L	I	Q	E	M	L	E	N	S	E	G	H	E	P	L	T	P	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T		S	S																	S	S