PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3l0jA_

Fold library id	PDB Header	Molecule	Title
c3l0jA_	PDB header: transcription	Chain: A: PDB Molecule: nuclear receptor ror-gamma;	PDBTitle: crystal structure of orphan nuclear receptor rorgamma in complex with2 natural ligand

Links to external resources
Added to library: Sun Aug 29 01:56:10 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A S L T E I E H L V Q S V C K S Y R E T C Q L R L E D L L R Q R S N I F S R E E V T G Y Q R K S M W E M W E R C A H H L T E A I Q Y V V E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
G G G
B
T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A K R L S G F M E L C Q N D Q I V L L K A G A M E V V L V R M C R A Y N A D N R T V F F E G K Y G G M E L F R A L G C S E L I S S I F D F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T G G G S
G G G G T T T T T T
G G G G G G G S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H S L S A L H F S E D E I A L Y T A L V L I N A H R P G L Q E K R K V E Q L Q Y N L E L A F H H H L C K T H R Q S I L A K L P P K G K L R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T
S
T T
G G G T T T S
S S T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . .

Sequence L C S Q H V E R L Q I F Q H L H P I V V Q A A F P P L Y K E L F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	S	L	T	E	I	E	H	L	V	Q	S	V	C	K	S	Y	R	E	T	C	Q	L	R	L	E	D	L	L	R	Q	R	S	N	I	F	S	R	E	E	V	T	G	Y	Q	R	K	S	M	W	E	M	W	E	R	C	A	H	H	L	T	E	A	I	Q	Y	V	V	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T		S	S								G	G	G		B											T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	K	R	L	S	G	F	M	E	L	C	Q	N	D	Q	I	V	L	L	K	A	G	A	M	E	V	V	L	V	R	M	C	R	A	Y	N	A	D	N	R	T	V	F	F	E	G	K	Y	G	G	M	E	L	F	R	A	L	G	C	S	E	L	I	S	S	I	F	D	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	T	T	G	G	G	S																					G	G	G	G			T	T	T	T					T	T					G	G	G	G	G	G	G	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	S	L	S	A	L	H	F	S	E	D	E	I	A	L	Y	T	A	L	V	L	I	N	A	H	R	P	G	L	Q	E	K	R	K	V	E	Q	L	Q	Y	N	L	E	L	A	F	H	H	H	L	C	K	T	H	R	Q	S	I	L	A	K	L	P	P	K	G	K	L	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T																	T	T		T	T		S																							T	T		G	G	G	T	T	T	S			S	S	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Sequence	L	C	S	Q	H	V	E	R	L	Q	I	F	Q	H	L	H	P	I	V	V	Q	A	A	F	P	P	L	Y	K	E	L	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								S