Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	D	K	V	Y	K	R	P	V	S	I	L	V	V	I	Y	A	Q	D	T	K	R	V	L	M	L	Q	R	R	D	D	P	D	F	W	Q	S	V	T	G	S	V	E	E	G	E	T	A	P	Q	A	A	M	R	E	V	K	E	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	T	I	D	V	V	A	E	Q	L	T	L	I	D	C	Q	R	T	V	E	F	E	I	F	S	H	L	R	H	R	Y	A	P	G	V	T	R	N	T	E	S	W	F	C	L	A	L	P	H	E	R	Q	I	V	F	T	E	H	L	A
Secondary structure
SS confidence
Disorder																																																			?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Sequence		Y	K	W	L	D	A	P	A	A	A	A	L	T	K	S	W	S	N	R	Q	A	I	E	Q	F	V	I	N	A	A
Secondary structure
SS confidence
Disorder																													?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 2o1c chain B Region: 4 - 149 Aligned: 146 Modelled: 146 Confidence: 100.0% Identity: 100% PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase Phyre2 PDB 3son chain B Region: 8 - 145 Aligned: 132 Modelled: 137 Confidence: 99.9% Identity: 25% PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution Phyre2 PDB 3fcm chain A Region: 10 - 148 Aligned: 134 Modelled: 139 Confidence: 99.9% Identity: 9% PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens Phyre2 PDB 2pq1 chain B Region: 6 - 146 Aligned: 126 Modelled: 141 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 Phyre2 PDB 3fjy chain B Region: 11 - 150 Aligned: 139 Modelled: 140 Confidence: 99.9% Identity: 18% PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis Phyre2 PDB 2azw chain A domain 1 Region: 6 - 150 Aligned: 133 Modelled: 145 Confidence: 99.9% Identity: 20% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1ktg chain A Region: 11 - 147 Aligned: 127 Modelled: 137 Confidence: 99.9% Identity: 25% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3gz8 chain C Region: 1 - 148 Aligned: 136 Modelled: 136 Confidence: 99.9% Identity: 19% PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose Phyre2 PDB 1xsb chain A Region: 11 - 145 Aligned: 126 Modelled: 135 Confidence: 99.9% Identity: 21% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2kdv chain A Region: 1 - 146 Aligned: 142 Modelled: 146 Confidence: 99.9% Identity: 20% PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli Phyre2 PDB 3dku chain B Region: 5 - 146 Aligned: 128 Modelled: 130 Confidence: 99.9% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 PDB 2gb5 chain B Region: 2 - 149 Aligned: 131 Modelled: 130 Confidence: 99.9% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 3cng chain C Region: 6 - 146 Aligned: 123 Modelled: 123 Confidence: 99.9% Identity: 21% PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea Phyre2 PDB 3f6a chain A Region: 8 - 146 Aligned: 136 Modelled: 137 Confidence: 99.9% Identity: 16% PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens Phyre2 PDB 1vcd chain A domain 1 Region: 10 - 148 Aligned: 121 Modelled: 125 Confidence: 99.9% Identity: 21% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1vk6 chain A domain 2 Region: 9 - 147 Aligned: 123 Modelled: 123 Confidence: 99.9% Identity: 21% Fold: Nudix Superfamily: Nudix Family: NADH pyrophosphatase Phyre2 PDB 2fb1 chain A domain 2 Region: 6 - 150 Aligned: 133 Modelled: 129 Confidence: 99.9% Identity: 19% Fold: Nudix Superfamily: Nudix Family: BT0354 N-terminal domain-like Phyre2 PDB 2b0v chain A domain 1 Region: 8 - 148 Aligned: 129 Modelled: 141 Confidence: 99.9% Identity: 19% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1k2e chain A Region: 10 - 148 Aligned: 130 Modelled: 139 Confidence: 99.9% Identity: 15% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1jkn chain A Region: 1 - 146 Aligned: 144 Modelled: 146 Confidence: 99.9% Identity: 18% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 1 c2o1cB_ 2 c3sonB_ 3 c3fcmA_ 4 c2pq1B_ 5 c3fjyB_ 6 d2azwa1 7 d1ktga_ 8 c3gz8C_ 9 d1xsba_ 10 c2kdvA_ 11 c3dkuB_ 12 c2gb5B_ 13 c3cngC_ 14 c3f6aA_ 15 d1vcda1 16 d1vk6a2 17 d2fb1a2 18 d2b0va1 19 d1k2ea_ 20 d1jkna_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c2o1cB_ 100.0 100 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 2 c3sonB_ 99.9 25 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 3 c3fcmA_ 99.9 9 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 4 c2pq1B_ 99.9 20 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 5 c3fjyB_ 99.9 18 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 6 d2azwa1 99.9 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 7 d1ktga_ 99.9 25 Fold:Nudix Superfamily:Nudix Family:MutT-like 8 c3gz8C_ 99.9 19 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 9 d1xsba_ 99.9 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 10 c2kdvA_ 99.9 20 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 11 c3dkuB_ 99.9 17 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 12 c2gb5B_ 99.9 22 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 13 c3cngC_ 99.9 21 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 14 c3f6aA_ 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 15 d1vcda1 99.9 21 Fold:Nudix Superfamily:Nudix Family:MutT-like 16 d1vk6a2 99.9 21 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 17 d2fb1a2 99.9 19 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 18 d2b0va1 99.9 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 19 d1k2ea_ 99.9 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 20 d1jkna_ 99.9 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 21 c2yyhC_ not modelled 99.9 21 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 22 c3grnB_ not modelled 99.9 17 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 23 c3gwyA_ not modelled 99.9 24 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 24 c2qjoB_ not modelled 99.9 20 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 25 c3q4iA_ not modelled 99.9 17 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 26 c3exqA_ not modelled 99.9 19 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 27 c3n77B_ not modelled 99.9 20 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 28 c2qkmF_ not modelled 99.9 17 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 29 c2fvvA_ not modelled 99.9 17 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 30 d2fvva1 not modelled 99.9 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 31 c3h95A_ not modelled 99.9 20 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 32 d1ryaa_ not modelled 99.9 18 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 33 c3fk9B_ not modelled 99.9 19 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 34 c3hhjA_ not modelled 99.9 18 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 35 c3r03B_ not modelled 99.9 22 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 36 c3o8sA_ not modelled 99.9 21 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 37 c3ef5A_ not modelled 99.9 20 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 38 d1puna_ not modelled 99.9 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 39 d2b06a1 not modelled 99.9 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 40 d2fkba1 not modelled 99.9 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 41 d1sjya_ not modelled 99.9 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 42 c2jvbA_ not modelled 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 43 c2r5wA_ not modelled 99.8 24 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 44 c3i9xA_ not modelled 99.8 17 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 45 c3gg6A_ not modelled 99.8 20 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 46 c3gz6A_ not modelled 99.8 19 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 47 d1ppva_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 48 c2fb1A_ not modelled 99.8 16 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 49 d1nqza_ not modelled 99.8 24 Fold:Nudix Superfamily:Nudix Family:MutT-like 50 d1irya_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 51 d2a6ta2 not modelled 99.8 13 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 52 d1hzta_ not modelled 99.8 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 53 d1g0sa_ not modelled 99.8 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 54 c3id9B_ not modelled 99.8 17 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 55 c2pqvA_ not modelled 99.8 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 56 d2fmla2 not modelled 99.8 21 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 57 c2yvoA_ not modelled 99.8 21 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 58 d1vhza_ not modelled 99.8 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 59 d2o5fa1 not modelled 99.8 21 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 60 c2w4eA_ not modelled 99.8 16 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 61 c3bm4B_ not modelled 99.8 17 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 62 c2fmlB_ not modelled 99.8 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 63 d1v8ya_ not modelled 99.7 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 64 c3edsA_ not modelled 99.7 19 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 65 d1x51a1 not modelled 99.7 15 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 66 c3rh7A_ not modelled 99.7 15 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 67 c3q91D_ not modelled 99.7 17 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 68 d1mqea_ not modelled 99.7 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 69 d1viua_ not modelled 99.7 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 70 c3f13A_ not modelled 99.7 18 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 71 c1rrqA_ not modelled 99.7 15 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 72 c3e57A_ not modelled 99.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 73 c2i6kA_ not modelled 99.7 15 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 74 d1rrqa2 not modelled 99.6 16 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 75 c2pnyA_ not modelled 99.6 18 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 76 c3dupB_ not modelled 99.6 19 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 77 d1q33a_ not modelled 99.6 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 78 c2j8qB_ not modelled 99.6 14 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 79 d1u20a1 not modelled 99.6 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 80 c3qsjA_ not modelled 99.4 26 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 81 c3couA_ not modelled 98.7 23 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 98.2 24 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 97.9 14 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 c2vldA_ not modelled 15.7 21 PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi 85 d2dexx3 not modelled 14.8 14 Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain 86 d1nc7a_ not modelled 10.9 14 Fold:Hypothetical protein TM1070 Superfamily:Hypothetical protein TM1070 Family:Hypothetical protein TM1070 87 c3d0jA_ not modelled 8.6 21 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824 88 d1jiha2 not modelled 8.6 5 Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain 89 d1bm8a_ not modelled 7.8 17 Fold:DNA-binding domain of Mlu1-box binding protein MBP1 Superfamily:DNA-binding domain of Mlu1-box binding protein MBP1 Family:DNA-binding domain of Mlu1-box binding protein MBP1 90 c2dexX_ not modelled 7.8 14 PDB header:hydrolase Chain: X: PDB Molecule:protein-arginine deiminase type iv; PDBTitle: crystal structure of human peptidylarginine deiminase 4 in complex2 with histone h3 n-terminal peptide including arg17 91 c2oh2B_ not modelled 6.7 7 PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase kappa; PDBTitle: ternary complex of human dna polymerase 92 c2hdnE_ not modelled 6.6 32 PDB header:translation Chain: E: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution 93 c2ii8F_ not modelled 6.5 22 PDB header:signaling protein Chain: F: PDB Molecule:anabaena sensory rhodopsin transducer protein; PDBTitle: anabaena sensory rhodopsin transducer 94 c2jswA_ not modelled 6.2 13 PDB header:actin-binding protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin c-terminal actin binding site 95 c2rbfB_ not modelled 5.1 26 PDB header:oxidoreductase/dna Chain: B: PDB Molecule:bifunctional protein puta; PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0