Phyre 2 Results for P0AFC0

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Email | l.a.kelley@imperial.ac.uk
Description | P0AFC0
Date | Thu Jan 5 11:25:51 GMT 2012
Unique Job ID | 3168ebd57d8e23e6

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c2o1cB_
Top template information
PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase
Confidence and coverage
Confidence: | 100.0% | Coverage: | 97%
146 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | D | K | V | Y | K | R | P | V | S | I | L | V | V | I | Y | A | Q | D | T | K | R | V | L | M | L | Q | R | R | D | D | P | D | F | W | Q | S | V | T | G | S | V | E | E | G | E | T | A | P | Q | A | A | M | R | E | V | K | E | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | T | I | D | V | V | A | E | Q | L | T | L | I | D | C | Q | R | T | V | E | F | E | I | F | S | H | L | R | H | R | Y | A | P | G | V | T | R | N | T | E | S | W | F | C | L | A | L | P | H | E | R | Q | I | V | F | T | E | H | L | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150
Sequence |  | Y | K | W | L | D | A | P | A | A | A | A | L | T | K | S | W | S | N | R | Q | A | I | E | Q | F | V | I | N | A | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2o1cB_ |

### PDB 2o1c chain B

Region: 4 - 149
Aligned: 146
Modelled: 146
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase
Chain: B: PDB Molecule:datp pyrophosphohydrolase;
PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase

Phyre2
2 |
| c3sonB_ |

### PDB 3son chain B

Region: 8 - 145
Aligned: 132
Modelled: 137
Confidence: 99.9%
Identity: 25%
PDB header:hydrolase
Chain: B: PDB Molecule:hypothetical nudix hydrolase;
PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution

Phyre2
3 |
| c3fcmA_ |

### PDB 3fcm chain A

Region: 10 - 148
Aligned: 134
Modelled: 139
Confidence: 99.9%
Identity: 9%
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family;
PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens

Phyre2
4 |
| c2pq1B_ |

### PDB 2pq1 chain B

Region: 6 - 146
Aligned: 126
Modelled: 141
Confidence: 99.9%
Identity: 20%
PDB header:hydrolase
Chain: B: PDB Molecule:ap4a hydrolase;
PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5

Phyre2
5 |
| c3fjyB_ |

### PDB 3fjy chain B

Region: 11 - 150
Aligned: 139
Modelled: 140
Confidence: 99.9%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:probable mutt1 protein;
PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis

Phyre2
6 |
| d2azwa1 |

### PDB 2azw chain A domain 1

Region: 6 - 150
Aligned: 133
Modelled: 145
Confidence: 99.9%
Identity: 20%
Fold: Nudix
Superfamily: Nudix
Family: MutT-like

Phyre2
7 |
| d1ktga_ |

### PDB 1ktg chain A

Region: 11 - 147
Aligned: 127
Modelled: 137
Confidence: 99.9%
Identity: 25%
Fold: Nudix
Superfamily: Nudix
Family: MutT-like

Phyre2
8 |
| c3gz8C_ |

### PDB 3gz8 chain C

Region: 1 - 148
Aligned: 136
Modelled: 136
Confidence: 99.9%
Identity: 19%
PDB header:dna binding protein
Chain: C: PDB Molecule:mutt/nudix family protein;
PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose

Phyre2
9 |
| d1xsba_ |

### PDB 1xsb chain A

Region: 11 - 145
Aligned: 126
Modelled: 135
Confidence: 99.9%
Identity: 21%
Fold: Nudix
Superfamily: Nudix
Family: MutT-like

Phyre2
10 |
| c2kdvA_ |

### PDB 2kdv chain A

Region: 1 - 146
Aligned: 142
Modelled: 146
Confidence: 99.9%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:rna pyrophosphohydrolase;
PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli

Phyre2
11 |
| c3dkuB_ |

### PDB 3dku chain B

Region: 5 - 146
Aligned: 128
Modelled: 130
Confidence: 99.9%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:putative phosphohydrolase;
PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1

Phyre2
12 |
| c2gb5B_ |

### PDB 2gb5 chain B

Region: 2 - 149
Aligned: 131
Modelled: 130
Confidence: 99.9%
Identity: 22%
PDB header:hydrolase
Chain: B: PDB Molecule:nadh pyrophosphatase;
PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution

Phyre2
13 |
| c3cngC_ |

### PDB 3cng chain C

Region: 6 - 146
Aligned: 123
Modelled: 123
Confidence: 99.9%
Identity: 21%
PDB header:hydrolase
Chain: C: PDB Molecule:nudix hydrolase;
PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea

Phyre2
14 |
| c3f6aA_ |

### PDB 3f6a chain A

Region: 8 - 146
Aligned: 136
Modelled: 137
Confidence: 99.9%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:hydrolase, nudix family;
PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens

Phyre2
15 |
| d1vcda1 |

### PDB 1vcd chain A domain 1

Region: 10 - 148
Aligned: 121
Modelled: 125
Confidence: 99.9%
Identity: 21%
Fold: Nudix
Superfamily: Nudix
Family: MutT-like

Phyre2
16 |
| d1vk6a2 |

### PDB 1vk6 chain A domain 2

Region: 9 - 147
Aligned: 123
Modelled: 123
Confidence: 99.9%
Identity: 21%
Fold: Nudix
Superfamily: Nudix
Family: NADH pyrophosphatase

Phyre2
17 |
| d2fb1a2 |

### PDB 2fb1 chain A domain 2

Region: 6 - 150
Aligned: 133
Modelled: 129
Confidence: 99.9%
Identity: 19%
Fold: Nudix
Superfamily: Nudix
Family: BT0354 N-terminal domain-like

Phyre2
18 |
| d2b0va1 |

### PDB 2b0v chain A domain 1

Region: 8 - 148
Aligned: 129
Modelled: 141
Confidence: 99.9%
Identity: 19%
Fold: Nudix
Superfamily: Nudix
Family: MutT-like

Phyre2
19 |
| d1k2ea_ |

### PDB 1k2e chain A

Region: 10 - 148
Aligned: 130
Modelled: 139
Confidence: 99.9%
Identity: 15%
Fold: Nudix
Superfamily: Nudix
Family: MutT-like

Phyre2
20 |
| d1jkna_ |

### PDB 1jkn chain A

Region: 1 - 146
Aligned: 144
Modelled: 146
Confidence: 99.9%
Identity: 18%
Fold: Nudix
Superfamily: Nudix
Family: MutT-like

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2o1cB_ |
|  | 100.0 | 100 | PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase
2 | c3sonB_ |
|  | 99.9 | 25 | PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution
3 | c3fcmA_ |
|  | 99.9 | 9 | PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens
4 | c2pq1B_ |
|  | 99.9 | 20 | PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5
5 | c3fjyB_ |
|  | 99.9 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis
6 | d2azwa1 |
|  | 99.9 | 20 | Fold:Nudix Superfamily:Nudix Family:MutT-like
7 | d1ktga_ |
|  | 99.9 | 25 | Fold:Nudix Superfamily:Nudix Family:MutT-like
8 | c3gz8C_ |
|  | 99.9 | 19 | PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose
9 | d1xsba_ |
|  | 99.9 | 21 | Fold:Nudix Superfamily:Nudix Family:MutT-like
10 | c2kdvA_ |
|  | 99.9 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli
11 | c3dkuB_ |
|  | 99.9 | 17 | PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1
12 | c2gb5B_ |
|  | 99.9 | 22 | PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
13 | c3cngC_ |
|  | 99.9 | 21 | PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea
14 | c3f6aA_ |
|  | 99.9 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens
15 | d1vcda1 |
|  | 99.9 | 21 | Fold:Nudix Superfamily:Nudix Family:MutT-like
16 | d1vk6a2 |
|  | 99.9 | 21 | Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase
17 | d2fb1a2 |
|  | 99.9 | 19 | Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like
18 | d2b0va1 |
|  | 99.9 | 19 | Fold:Nudix Superfamily:Nudix Family:MutT-like
19 | d1k2ea_ |
|  | 99.9 | 15 | Fold:Nudix Superfamily:Nudix Family:MutT-like
20 | d1jkna_ |
|  | 99.9 | 18 | Fold:Nudix Superfamily:Nudix Family:MutT-like
21 | c2yyhC_ |
| not modelled | 99.9 | 21 | PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus
22 | c3grnB_ |
| not modelled | 99.9 | 17 | PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1
23 | c3gwyA_ |
| not modelled | 99.9 | 24 | PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis
24 | c2qjoB_ |
| not modelled | 99.9 | 20 | PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp.
25 | c3q4iA_ |
| not modelled | 99.9 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+
26 | c3exqA_ |
| not modelled | 99.9 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis
27 | c3n77B_ |
| not modelled | 99.9 | 20 | PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2
28 | c2qkmF_ |
| not modelled | 99.9 | 17 | PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex
29 | c2fvvA_ |
| not modelled | 99.9 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1
30 | d2fvva1 |
| not modelled | 99.9 | 17 | Fold:Nudix Superfamily:Nudix Family:MutT-like
31 | c3h95A_ |
| not modelled | 99.9 | 20 | PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6
32 | d1ryaa_ |
| not modelled | 99.9 | 18 | Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD
33 | c3fk9B_ |
| not modelled | 99.9 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans
34 | c3hhjA_ |
| not modelled | 99.9 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae
35 | c3r03B_ |
| not modelled | 99.9 | 22 | PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum
36 | c3o8sA_ |
| not modelled | 99.9 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution
37 | c3ef5A_ |
| not modelled | 99.9 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp
38 | d1puna_ |
| not modelled | 99.9 | 24 | Fold:Nudix Superfamily:Nudix Family:MutT-like
39 | d2b06a1 |
| not modelled | 99.9 | 18 | Fold:Nudix Superfamily:Nudix Family:MutT-like
40 | d2fkba1 |
| not modelled | 99.9 | 18 | Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like
41 | d1sjya_ |
| not modelled | 99.9 | 17 | Fold:Nudix Superfamily:Nudix Family:MutT-like
42 | c2jvbA_ |
| not modelled | 99.9 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2
43 | c2r5wA_ |
| not modelled | 99.8 | 24 | PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis
44 | c3i9xA_ |
| not modelled | 99.8 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua
45 | c3gg6A_ |
| not modelled | 99.8 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18
46 | c3gz6A_ |
| not modelled | 99.8 | 19 | PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna
47 | d1ppva_ |
| not modelled | 99.8 | 18 | Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like
48 | c2fb1A_ |
| not modelled | 99.8 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron
49 | d1nqza_ |
| not modelled | 99.8 | 24 | Fold:Nudix Superfamily:Nudix Family:MutT-like
50 | d1irya_ |
| not modelled | 99.8 | 18 | Fold:Nudix Superfamily:Nudix Family:MutT-like
51 | d2a6ta2 |
| not modelled | 99.8 | 13 | Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like
52 | d1hzta_ |
| not modelled | 99.8 | 18 | Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like
53 | d1g0sa_ |
| not modelled | 99.8 | 19 | Fold:Nudix Superfamily:Nudix Family:MutT-like
54 | c3id9B_ |
| not modelled | 99.8 | 17 | PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis
55 | c2pqvA_ |
| not modelled | 99.8 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae
56 | d2fmla2 |
| not modelled | 99.8 | 21 | Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like
57 | c2yvoA_ |
| not modelled | 99.8 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8
58 | d1vhza_ |
| not modelled | 99.8 | 16 | Fold:Nudix Superfamily:Nudix Family:MutT-like
59 | d2o5fa1 |
| not modelled | 99.8 | 21 | Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like
60 | c2w4eA_ |
| not modelled | 99.8 | 16 | PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans
61 | c3bm4B_ |
| not modelled | 99.8 | 17 | PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr
62 | c2fmlB_ |
| not modelled | 99.8 | 21 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis
63 | d1v8ya_ |
| not modelled | 99.7 | 16 | Fold:Nudix Superfamily:Nudix Family:MutT-like
64 | c3edsA_ |
| not modelled | 99.7 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis
65 | d1x51a1 |
| not modelled | 99.7 | 15 | Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like
66 | c3rh7A_ |
| not modelled | 99.7 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution
67 | c3q91D_ |
| not modelled | 99.7 | 17 | PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14)
68 | d1mqea_ |
| not modelled | 99.7 | 17 | Fold:Nudix Superfamily:Nudix Family:MutT-like
69 | d1viua_ |
| not modelled | 99.7 | 18 | Fold:Nudix Superfamily:Nudix Family:MutT-like
70 | c3f13A_ |
| not modelled | 99.7 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum
71 | c1rrqA_ |
| not modelled | 99.7 | 15 | PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair
72 | c3e57A_ |
| not modelled | 99.7 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase
73 | c2i6kA_ |
| not modelled | 99.7 | 15 | PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog
74 | d1rrqa2 |
| not modelled | 99.6 | 16 | Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like
75 | c2pnyA_ |
| not modelled | 99.6 | 18 | PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2
76 | c3dupB_ |
| not modelled | 99.6 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170
77 | d1q33a_ |
| not modelled | 99.6 | 16 | Fold:Nudix Superfamily:Nudix Family:MutT-like
78 | c2j8qB_ |
| not modelled | 99.6 | 14 | PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion.
79 | d1u20a1 |
| not modelled | 99.6 | 15 | Fold:Nudix Superfamily:Nudix Family:MutT-like
80 | c3qsjA_ |
| not modelled | 99.4 | 26 | PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius
81 | c3couA_ |
| not modelled | 98.7 | 23 | PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16)
82 | c3kvhA_ |
| not modelled | 98.2 | 24 | PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein)
83 | c3p5tE_ |
| not modelled | 97.9 | 14 | PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex
84 | c2vldA_ |
| not modelled | 15.7 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:upf0286 protein pyrab01260; PDBTitle: crystal structure of a repair endonuclease from pyrococcus2 abyssi
85 | d2dexx3 |
| not modelled | 14.8 | 14 | Fold:Pentein, beta/alpha-propeller Superfamily:Pentein Family:Peptidylarginine deiminase Pad4, catalytic C-terminal domain
86 | d1nc7a_ |
| not modelled | 10.9 | 14 | Fold:Hypothetical protein TM1070 Superfamily:Hypothetical protein TM1070 Family:Hypothetical protein TM1070
87 | c3d0jA_ |
| not modelled | 8.6 | 21 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein ca_c3497; PDBTitle: crystal structure of conserved protein of unknown function ca_c34972 from clostridium acetobutylicum atcc 824
88 | d1jiha2 |
| not modelled | 8.6 | 5 | Fold:DNA/RNA polymerases Superfamily:DNA/RNA polymerases Family:Lesion bypass DNA polymerase (Y-family), catalytic domain
89 | d1bm8a_ |
| not modelled | 7.8 | 17 | Fold:DNA-binding domain of Mlu1-box binding protein MBP1 Superfamily:DNA-binding domain of Mlu1-box binding protein MBP1 Family:DNA-binding domain of Mlu1-box binding protein MBP1
90 | c2dexX_ |
| not modelled | 7.8 | 14 | PDB header:hydrolase Chain: X: PDB Molecule:protein-arginine deiminase type iv; PDBTitle: crystal structure of human peptidylarginine deiminase 4 in complex2 with histone h3 n-terminal peptide including arg17
91 | c2oh2B_ |
| not modelled | 6.7 | 7 | PDB header:transferase/dna Chain: B: PDB Molecule:dna polymerase kappa; PDBTitle: ternary complex of human dna polymerase
92 | c2hdnE_ |
| not modelled | 6.6 | 32 | PDB header:translation Chain: E: PDB Molecule:elongation factor ef-tu; PDBTitle: trypsin-modified elongation factor tu in complex with2 tetracycline at 2.8 angstrom resolution
93 | c2ii8F_ |
| not modelled | 6.5 | 22 | PDB header:signaling protein Chain: F: PDB Molecule:anabaena sensory rhodopsin transducer protein; PDBTitle: anabaena sensory rhodopsin transducer
94 | c2jswA_ |
| not modelled | 6.2 | 13 | PDB header:actin-binding protein Chain: A: PDB Molecule:talin-1; PDBTitle: nmr structure of the talin c-terminal actin binding site
95 | c2rbfB_ |
| not modelled | 5.1 | 26 | PDB header:oxidoreductase/dna Chain: B: PDB Molecule:bifunctional protein puta; PDBTitle: structure of the ribbon-helix-helix domain of escherichia coli puta2 (puta52) complexed with operator dna (o2)

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0