Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	E	I	F	F	T	I	L	I	M	T	L	V	V	S	L	S	G	V	V	T	R	V	M	P	F	Q	I	P	L	P	L	M	Q	I	A	I	G	A	L	L	A	W	P	T	F	G	L	H	V	E	F	D	P	E	L	F	L	V	L
Secondary structure
SS confidence
Disorder		?		?																																											?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	I	P	P	L	L	F	A	D	G	W	K	T	P	T	R	E	F	L	E	H	G	R	E	I	F	G	L	A	L	A	L	V	V	V	T	V	V	G	I	G	F	L	I	Y	W	V	V	P	G	I	P	L	I	P	A	F	A	L	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	V	L	S	P	T	D	A	V	A	L	S	G	I	V	G	E	G	R	I	P	K	K	I	M	G	I	L	Q	G	E	A	L	M	N	D	A	S	G	L	V	S	L	K	F	A	V	A	V	A	M	G	T	M	I	F	T	V	G	G
Secondary structure
SS confidence
Disorder																	?	?	?	?	?																															?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		A	T	V	E	F	M	K	V	A	I	G	G	I	L	A	G	F	V	V	S	W	L	Y	G	R	S	L	R	F	L	S	R	W	G	G	D	E	P	A	T	Q	I	V	L	L	F	L	L	P	F	A	S	Y	L	I	A	E	H	I	G
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		V	S	G	I	L	A	A	V	A	A	G	M	T	I	T	R	S	G	V	M	R	R	A	P	L	A	M	R	L	R	A	N	S	T	W	A	M	L	E	F	V	F	N	G	M	V	F	L	L	L	G	L	Q	L	P	G	I	L	E	T
Secondary structure
SS confidence
Disorder																			?	?	?	?	?	?	?																																				?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		S	L	M	A	A	E	I	D	P	N	V	E	I	W	M	L	F	T	N	I	I	L	I	Y	A	A	L	M	L	V	R	F	G	W	L	W	T	M	K	K	F	S	N	R	F	L	K	K	K	P	M	E	F	G	S	W	T	T	R	E
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?																																				?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		I	L	I	A	S	F	A	G	V	R	G	A	I	T	L	A	G	V	L	S	I	P	L	L	L	P	D	G	N	V	F	P	A	R	Y	E	L	V	F	L	A	A	G	V	I	L	F	S	L	F	V	G	V	V	M	L	P	I	L	L
Secondary structure
SS confidence
Disorder																										?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Sequence		Q	H	I	E	V	A	D	H	S	Q	Q	L	K	E	E	R	I	A	R	A	A	T	A	E	V	A	I	V	A	I	Q	K	M	E	E	R	L	A	A	D	T	E	E	N	I	D	N	Q	L	L	T	E	V	S	S	R	V	I	G	N
Secondary structure
SS confidence
Disorder						?	?	?	?	?	?	?	?																								?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540
Sequence		L	R	R	R	A	D	G	R	N	D	V	E	S	S	V	Q	E	E	N	L	E	R	R	F	R	L	A	A	L	R	S	E	R	A	E	L	Y	H	L	R	A	T	R	E	I	S	N	E	T	L	Q	K	L	L	H	D	L	D	L	L
Secondary structure
SS confidence
Disorder					?	?	?	?	?	?	?	?	?	?	?	?	?																										?		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.
Sequence		E	A	L	L	I	E	E	N	Q
Secondary structure
SS confidence
Disorder						?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1zcd chain A Region: 8 - 422 Aligned: 364 Modelled: 380 Confidence: 99.9% Identity: 14% PDB header:membrane protein Chain: A: PDB Molecule:na(+)/h(+) antiporter 1; PDBTitle: crystal structure of the na+/h+ antiporter nhaa Phyre2 PDB 2l0e chain A Region: 116 - 142 Aligned: 27 Modelled: 27 Confidence: 93.7% Identity: 22% PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: structural and functional analysis of tm vi of the nhe1 isoform of the2 na+/h+ exchanger Phyre2 PDB 2kbv chain A Region: 359 - 381 Aligned: 23 Modelled: 23 Confidence: 84.4% Identity: 26% PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: structural and functional analysis of tm xi of the nhe12 isoform of the na+/h+ exchanger Phyre2 PDB 3oja chain B Region: 424 - 549 Aligned: 123 Modelled: 126 Confidence: 43.8% Identity: 11% PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 1f6g chain A Region: 374 - 468 Aligned: 95 Modelled: 95 Confidence: 37.9% Identity: 14% Fold: Voltage-gated potassium channels Superfamily: Voltage-gated potassium channels Family: Voltage-gated potassium channels Phyre2 PDB 3hzs chain A Region: 506 - 538 Aligned: 33 Modelled: 33 Confidence: 33.3% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:monofunctional glycosyltransferase; PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin Phyre2 PDB 1y4c chain A Region: 429 - 549 Aligned: 112 Modelled: 121 Confidence: 32.4% Identity: 13% PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp Phyre2 PDB 1vqo chain P domain 1 Region: 501 - 537 Aligned: 37 Modelled: 37 Confidence: 29.1% Identity: 19% Fold: Ribosomal protein L19 (L19e) Superfamily: Ribosomal protein L19 (L19e) Family: Ribosomal protein L19 (L19e) Phyre2 PDB 2zv4 chain O Region: 431 - 549 Aligned: 119 Modelled: 119 Confidence: 28.0% Identity: 11% PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution Phyre2 PDB 3oja chain A Region: 421 - 547 Aligned: 125 Modelled: 127 Confidence: 25.2% Identity: 11% PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex Phyre2 PDB 3dtp chain A Region: 431 - 549 Aligned: 119 Modelled: 119 Confidence: 24.0% Identity: 11% PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map Phyre2 PDB 2csb chain A domain 1 Region: 514 - 535 Aligned: 22 Modelled: 22 Confidence: 22.4% Identity: 14% Fold: SAM domain-like Superfamily: RuvA domain 2-like Family: Topoisomerase V repeat domain Phyre2 PDB 4a1c chain O Region: 501 - 537 Aligned: 37 Modelled: 37 Confidence: 22.3% Identity: 16% PDB header:ribosome Chain: O: PDB Molecule:rpl19; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. Phyre2 PDB 3exm chain A Region: 513 - 548 Aligned: 36 Modelled: 36 Confidence: 20.6% Identity: 6% PDB header:hydrolase Chain: A: PDB Molecule:phosphatase sc4828; PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp Phyre2 PDB 2zkr chain P Region: 501 - 537 Aligned: 37 Modelled: 37 Confidence: 20.6% Identity: 19% PDB header:ribosomal protein/rna Chain: P: PDB Molecule:rna expansion segment es31 part i; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map Phyre2 PDB 2nww chain A domain 1 Region: 28 - 254 Aligned: 214 Modelled: 227 Confidence: 19.8% Identity: 19% Fold: Proton glutamate symport protein Superfamily: Proton glutamate symport protein Family: Proton glutamate symport protein Phyre2 PDB 1i84 chain V Region: 409 - 549 Aligned: 132 Modelled: 141 Confidence: 19.7% Identity: 15% PDB header:contractile protein Chain: V: PDB Molecule:smooth muscle myosin heavy chain; PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment. Phyre2 PDB 2dfs chain A Region: 430 - 549 Aligned: 120 Modelled: 120 Confidence: 16.9% Identity: 13% PDB header:contractile protein/transport protein Chain: A: PDB Molecule:myosin-5a; PDBTitle: 3-d structure of myosin-v inhibited state Phyre2 PDB 3iz5 chain T Region: 502 - 537 Aligned: 36 Modelled: 36 Confidence: 15.7% Identity: 14% PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein l19 (l19e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome Phyre2 PDB 3h36 chain A Region: 479 - 536 Aligned: 58 Modelled: 55 Confidence: 15.4% Identity: 12% PDB header:transferase Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase; PDBTitle: structure of an uncharacterized domain in polyribonucleotide2 nucleotidyltransferase from streptococcus mutans ua159 Phyre2 1 c1zcdA_ 2 c2l0eA_ 3 c2kbvA_ 4 c3ojaB_ 5 d1f6ga_ 6 c3hzsA_ 7 c1y4cA_ 8 d1vqop1 9 c2zv4O_ 10 c3ojaA_ 11 c3dtpA_ 12 d2csba1 13 c4a1cO_ 14 c3exmA_ 15 c2zkrp_ 16 d2nwwa1 17 c1i84V_ 18 c2dfsA_ 19 c3iz5T_ 20 c3h36A_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1zcdA_ 99.9 14 PDB header:membrane protein Chain: A: PDB Molecule:na(+)/h(+) antiporter 1; PDBTitle: crystal structure of the na+/h+ antiporter nhaa 2 c2l0eA_ 93.7 22 PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: structural and functional analysis of tm vi of the nhe1 isoform of the2 na+/h+ exchanger 3 c2kbvA_ 84.4 26 PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: structural and functional analysis of tm xi of the nhe12 isoform of the na+/h+ exchanger 4 c3ojaB_ 43.8 11 PDB header:protein binding Chain: B: PDB Molecule:anopheles plasmodium-responsive leucine-rich repeat protein PDBTitle: crystal structure of lrim1/apl1c complex 5 d1f6ga_ 37.9 14 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 6 c3hzsA_ 33.3 12 PDB header:transferase Chain: A: PDB Molecule:monofunctional glycosyltransferase; PDBTitle: s. aureus monofunctional glycosyltransferase (mtga)in complex with2 moenomycin 7 c1y4cA_ 32.4 13 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 8 d1vqop1 29.1 19 Fold:Ribosomal protein L19 (L19e) Superfamily:Ribosomal protein L19 (L19e) Family:Ribosomal protein L19 (L19e) 9 c2zv4O_ 28.0 11 PDB header:structural protein Chain: O: PDB Molecule:major vault protein; PDBTitle: the structure of rat liver vault at 3.5 angstrom resolution 10 c3ojaA_ 25.2 11 PDB header:protein binding Chain: A: PDB Molecule:leucine-rich immune molecule 1; PDBTitle: crystal structure of lrim1/apl1c complex 11 c3dtpA_ 24.0 11 PDB header:contractile protein Chain: A: PDB Molecule:myosin 2 heavy chain chimera of smooth and PDBTitle: tarantula heavy meromyosin obtained by flexible docking to2 tarantula muscle thick filament cryo-em 3d-map 12 d2csba1 22.4 14 Fold:SAM domain-like Superfamily:RuvA domain 2-like Family:Topoisomerase V repeat domain 13 c4a1cO_ 22.3 16 PDB header:ribosome Chain: O: PDB Molecule:rpl19; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 4. 14 c3exmA_ 20.6 6 PDB header:hydrolase Chain: A: PDB Molecule:phosphatase sc4828; PDBTitle: crystal structure of the phosphatase sc4828 with the non-hydrolyzable2 nucleotide gpcp 15 c2zkrp_ 20.6 19 PDB header:ribosomal protein/rna Chain: P: PDB Molecule:rna expansion segment es31 part i; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 16 d2nwwa1 19.8 19 Fold:Proton glutamate symport protein Superfamily:Proton glutamate symport protein Family:Proton glutamate symport protein 17 c1i84V_ 19.7 15 PDB header:contractile protein Chain: V: PDB Molecule:smooth muscle myosin heavy chain; PDBTitle: cryo-em structure of the heavy meromyosin subfragment of2 chicken gizzard smooth muscle myosin with regulatory light3 chain in the dephosphorylated state. only c alphas4 provided for regulatory light chain. only backbone atoms5 provided for s2 fragment. 18 c2dfsA_ 16.9 13 PDB header:contractile protein/transport protein Chain: A: PDB Molecule:myosin-5a; PDBTitle: 3-d structure of myosin-v inhibited state 19 c3iz5T_ 15.7 14 PDB header:ribosome Chain: T: PDB Molecule:60s ribosomal protein l19 (l19e); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 20 c3h36A_ 15.4 12 PDB header:transferase Chain: A: PDB Molecule:polyribonucleotide nucleotidyltransferase; PDBTitle: structure of an uncharacterized domain in polyribonucleotide2 nucleotidyltransferase from streptococcus mutans ua159 21 d2c0sa1 not modelled 14.0 15 Fold:ROP-like Superfamily:BAS1536-like Family:BAS1536-like 22 c2v0pA_ not modelled 13.7 8 PDB header:hydrolase inhibitor Chain: A: PDB Molecule:type 2a phosphatase-associated protein 42; PDBTitle: the structure of tap42 alpha4 subunit 23 c1y4eA_ not modelled 13.3 24 PDB header:membrane protein Chain: A: PDB Molecule:sodium/hydrogen exchanger 1; PDBTitle: nmr structure of transmembrane segment iv of the nhe12 isoform of the na+/h+ exchanger 24 d2oqoa1 not modelled 12.1 16 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 25 c3rl0j_ not modelled 11.5 17 PDB header:membrane protein/exocytosis Chain: J: PDB Molecule:syntaxin-1a; PDBTitle: truncated snare complex with complexin (p1) 26 d1rkla_ not modelled 11.2 21 Fold:Single transmembrane helix Superfamily:Oligosaccharyltransferase subunit ost4p Family:Oligosaccharyltransferase subunit ost4p 27 d2bzba1 not modelled 10.5 22 Fold:ROP-like Superfamily:BAS1536-like Family:BAS1536-like 28 c3layF_ not modelled 9.9 19 PDB header:metal binding protein Chain: F: PDB Molecule:zinc resistance-associated protein; PDBTitle: alpha-helical barrel formed by the decamer of the zinc resistance-2 associated protein (stm4172) from salmonella enterica subsp. enterica3 serovar typhimurium str. lt2 29 c1kilE_ not modelled 9.7 14 PDB header:membrane protein Chain: E: PDB Molecule:complexin i snare-complex binding region; PDBTitle: three-dimensional structure of the complexin/snare complex 30 d1jkva_ not modelled 9.4 24 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 31 c2l2lA_ not modelled 9.4 32 PDB header:transferase Chain: A: PDB Molecule:transcriptional repressor p66-alpha; PDBTitle: solution structure of the coiled-coil complex between mbd2 and2 p66alpha 32 c2akfA_ not modelled 9.3 42 PDB header:protein binding Chain: A: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 33 c2akfC_ not modelled 9.3 42 PDB header:protein binding Chain: C: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 34 c2akfB_ not modelled 9.3 42 PDB header:protein binding Chain: B: PDB Molecule:coronin-1a; PDBTitle: crystal structure of the coiled-coil domain of coronin 1 35 c3f1iH_ not modelled 9.2 18 PDB header:protein binding Chain: H: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase PDBTitle: human escrt-0 core complex 36 c2kncA_ not modelled 9.1 13 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 37 c3lt7D_ not modelled 8.9 25 PDB header:cell adhesion Chain: D: PDB Molecule:adhesin yada; PDBTitle: a transition from strong right-handed to canonical left-handed2 supercoiling in a conserved coiled coil segment of trimeric3 autotransporter adhesins - the m3 mutant structure 38 c1ei3C_ not modelled 8.8 9 PDB header: PDB COMPND: 39 c1nh2D_ not modelled 8.7 21 PDB header:transcription/dna Chain: D: PDB Molecule:transcription initiation factor iia small chain; PDBTitle: crystal structure of a yeast tfiia/tbp/dna complex 40 c3dinD_ not modelled 8.7 25 PDB header:membrane protein, protein transport Chain: D: PDB Molecule:preprotein translocase subunit sece; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase 41 d2olua1 not modelled 8.6 16 Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like 42 c2pfmA_ not modelled 8.4 16 PDB header:lyase Chain: A: PDB Molecule:adenylosuccinate lyase; PDBTitle: crystal structure of adenylosuccinate lyase (purb) from bacillus2 anthracis 43 c2x7aB_ not modelled 8.0 27 PDB header:immune system Chain: B: PDB Molecule:bone marrow stromal antigen 2; PDBTitle: structural basis of hiv-1 tethering to membranes by the2 bst2-tetherin ectodomain 44 d1v9va1 not modelled 8.0 11 Fold:Bromodomain-like Superfamily:MAST3 pre-PK domain-like Family:MAST3 pre-PK domain-like 45 d2oeza1 not modelled 8.0 20 Fold:YacF-like Superfamily:YacF-like Family:YacF-like 46 d1zk8a2 not modelled 7.9 5 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 47 c3rkoF_ not modelled 7.9 16 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 48 c2j9wB_ not modelled 7.9 22 PDB header:protein transport Chain: B: PDB Molecule:vps28-prov protein; PDBTitle: structural insight into the escrt-i-ii link and its role in2 mvb trafficking 49 c1y66D_ not modelled 7.7 27 PDB header:de novo protein Chain: D: PDB Molecule:engrailed homeodomain; PDBTitle: dioxane contributes to the altered conformation and2 oligomerization state of a designed engrailed homeodomain3 variant 50 d1c3ca_ not modelled 7.6 13 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 51 d2j9ua1 not modelled 7.5 22 Fold:Four-helical up-and-down bundle Superfamily:VPS28 C-terminal domain-like Family:VPS28 C-terminal domain-like 52 d2fcwa1 not modelled 7.4 18 Fold:RAP domain-like Superfamily:RAP domain-like Family:RAP domain 53 c2qc7A_ not modelled 7.4 24 PDB header:chaperone Chain: A: PDB Molecule:endoplasmic reticulum protein erp29; PDBTitle: crystal structure of the protein-disulfide isomerase related chaperone2 erp29 54 c1q90R_ not modelled 7.2 16 PDB header:photosynthesis Chain: R: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 55 d1q90r_ not modelled 7.2 16 Fold:Single transmembrane helix Superfamily:ISP transmembrane anchor Family:ISP transmembrane anchor 56 c2qdqA_ not modelled 7.2 18 PDB header:structural protein Chain: A: PDB Molecule:talin-1; PDBTitle: crystal structure of the talin dimerisation domain 57 c2yvxD_ not modelled 7.1 8 PDB header:transport protein Chain: D: PDB Molecule:mg2+ transporter mgte; PDBTitle: crystal structure of magnesium transporter mgte 58 c3no7A_ not modelled 7.1 28 PDB header:dna binding protein Chain: A: PDB Molecule:putative plasmid related protein; PDBTitle: crystal structure of the centromere-binding protein parb from plasmid2 pcxc100 59 d1i0aa_ not modelled 7.0 15 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 60 c1e3hA_ not modelled 6.9 12 PDB header:polyribonucleotide transferase Chain: A: PDB Molecule:guanosine pentaphosphate synthetase; PDBTitle: semet derivative of streptomyces antibioticus pnpase/gpsi2 enzyme 61 c1oy8A_ not modelled 6.8 13 PDB header:membrane protein Chain: A: PDB Molecule:acriflavine resistance protein b; PDBTitle: structural basis of multiple drug binding capacity of the acrb2 multidrug efflux pump 62 d1kx5c_ not modelled 6.8 27 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 63 d1iwga8 not modelled 6.7 7 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 64 d1nh2d1 not modelled 6.7 18 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 65 d2p12a1 not modelled 6.5 12 Fold:FomD barrel-like Superfamily:FomD-like Family:FomD-like 66 d2oi8a2 not modelled 6.5 11 Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain 67 c3qh9A_ not modelled 6.4 16 PDB header:structural protein Chain: A: PDB Molecule:liprin-beta-2; PDBTitle: human liprin-beta2 coiled-coil 68 c2e9fC_ not modelled 6.3 24 PDB header:lyase Chain: C: PDB Molecule:argininosuccinate lyase; PDBTitle: crystal structure of t.th.hb8 argininosuccinate lyase complexed with2 l-arginine 69 c3zs9C_ not modelled 6.3 21 PDB header:hydrolase/transport protein Chain: C: PDB Molecule:golgi to er traffic protein 2; PDBTitle: s. cerevisiae get3-adp-alf4- complex with a cytosolic get2 fragment 70 d1q90g_ not modelled 6.3 18 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 71 c1q90G_ not modelled 6.3 18 PDB header:photosynthesis Chain: G: PDB Molecule:cytochrome b6f complex subunit petg; PDBTitle: structure of the cytochrome b6f (plastohydroquinone : plastocyanin2 oxidoreductase) from chlamydomonas reinhardtii 72 c3sjdE_ not modelled 6.3 21 PDB header:hydrolase/transport protein Chain: E: PDB Molecule:golgi to er traffic protein 2; PDBTitle: crystal structure of s. cerevisiae get3 with bound adp-mg2+ in complex2 with get2 cytosolic domain 73 c3c8tA_ not modelled 6.3 11 PDB header:lyase Chain: A: PDB Molecule:fumarate lyase; PDBTitle: crystal structure of fumarate lyase from mesorhizobium sp. bnc1 74 d1id3c_ not modelled 6.3 27 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 75 d1eqza_ not modelled 6.2 27 Fold:Histone-fold Superfamily:Histone-fold Family:Nucleosome core histones 76 c2p90B_ not modelled 6.2 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein cgl1923; PDBTitle: the crystal structure of a protein of unknown function from2 corynebacterium glutamicum atcc 13032 77 c2w6aB_ not modelled 6.2 16 PDB header:signaling protein Chain: B: PDB Molecule:arf gtpase-activating protein git1; PDBTitle: x-ray structure of the dimeric git1 coiled-coil domain 78 d2ftua1 not modelled 6.1 18 Fold:RAP domain-like Superfamily:RAP domain-like Family:RAP domain 79 c3q5dA_ not modelled 6.1 12 PDB header:hydrolase Chain: A: PDB Molecule:atlastin-1; PDBTitle: crystal structure of human atlastin-1 (residues 1-447) bound to gdp,2 crystal form 1 80 d1nvpd1 not modelled 6.0 15 Fold:Transcription factor IIA (TFIIA), alpha-helical domain Superfamily:Transcription factor IIA (TFIIA), alpha-helical domain Family:Transcription factor IIA (TFIIA), alpha-helical domain 81 c1s5lL_ not modelled 6.0 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 82 c3a0bl_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 83 c3kziL_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of monomeric form of cyanobacterial photosystem ii 84 c3prqL_ not modelled 6.0 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 1 of 2). this file contains first monomer of psii3 dimer 85 c3prrL_ not modelled 6.0 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii in complex with2 terbutryn (part 2 of 2). this file contains second monomer of psii3 dimer 86 c3a0hl_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 87 c3arcL_ not modelled 6.0 13 PDB header:electron transport, photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of oxygen-evolving photosystem ii at 1.9 angstrom2 resolution 88 c3a0hL_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of i-substituted photosystem ii complex 89 c3a0bL_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of br-substituted photosystem ii complex 90 c1s5ll_ not modelled 6.0 13 PDB header:photosynthesis Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: architecture of the photosynthetic oxygen evolving center 91 c2axtL_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 92 c2axtl_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center l protein; PDBTitle: crystal structure of photosystem ii from thermosynechococcus elongatus 93 c3bz2L_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 22 of 2). this file contains second monomer of psii dimer 94 c3bz1L_ not modelled 6.0 13 PDB header:electron transport Chain: L: PDB Molecule:photosystem ii reaction center protein l; PDBTitle: crystal structure of cyanobacterial photosystem ii (part 12 of 2). this file contains first monomer of psii dimer 95 d2axtl1 not modelled 6.0 13 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein L, PsbL Family:PsbL-like 96 c3epvB_ not modelled 6.0 13 PDB header:metal binding protein Chain: B: PDB Molecule:nickel and cobalt resistance protein cnrr; PDBTitle: x-ray structure of the metal-sensor cnrx in both the apo- and copper-2 bound forms 97 d1q5na_ not modelled 5.9 11 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 98 d1tj7a_ not modelled 5.9 15 Fold:L-aspartase-like Superfamily:L-aspartase-like Family:L-aspartase/fumarase 99 c3gaaB_ not modelled 5.9 2 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein ta1441; PDBTitle: the crystal structure of the protein with unknown function from2 thermoplasma acidophilum

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0