Email l.a.kelley@imperial.ac.uk Description P0AAE8 Date Thu Jan 5 11:12:43 GMT 2012 Unique Job ID 265af434ac1e095b

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3giaA_ 100.0 17 PDB header:transport protein Chain: A: PDB Molecule:uncharacterized protein mj0609; PDBTitle: crystal structure of apct transporter 2 c3lrcC_ 100.0 40 PDB header:transport protein Chain: C: PDB Molecule:arginine/agmatine antiporter; PDBTitle: structure of e. coli adic (p1) 3 c2jlnA_ 99.9 10 PDB header:membrane protein Chain: A: PDB Molecule:mhp1; PDBTitle: structure of mhp1, a nucleobase-cation-symport-1 family2 transporter 4 c3dh4A_ 99.2 10 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: crystal structure of sodium/sugar symporter with bound galactose from2 vibrio parahaemolyticus 5 c2xq2A_ 99.1 11 PDB header:transport protein Chain: A: PDB Molecule:sodium/glucose cotransporter; PDBTitle: structure of the k294a mutant of vsglt 6 d2a65a1 95.8 19 Fold:SNF-like Superfamily:SNF-like Family:SNF-like 7 c2w8aC_ 91.4 13 PDB header:membrane protein Chain: C: PDB Molecule:glycine betaine transporter betp; PDBTitle: crystal structure of the sodium-coupled glycine betaine2 symporter betp from corynebacterium glutamicum with bound3 substrate 8 c3rkoF_ 60.5 11 PDB header:oxidoreductase Chain: F: PDB Molecule:nadh-quinone oxidoreductase subunit j; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 9 c3hfxA_ 50.9 10 PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter 10 d1eysh2 36.2 19 Fold:Single transmembrane helix Superfamily:Photosystem II reaction centre subunit H, transmembrane region Family:Photosystem II reaction centre subunit H, transmembrane region 11 c2rddB_ 22.4 15 PDB header:membrane protein/transport protein Chain: B: PDB Molecule:upf0092 membrane protein yajc; PDBTitle: x-ray crystal structure of acrb in complex with a novel2 transmembrane helix. 12 c2kluA_ 20.0 23 PDB header:immune system, membrane protein Chain: A: PDB Molecule:t-cell surface glycoprotein cd4; PDBTitle: nmr structure of the transmembrane and cytoplasmic domains2 of human cd4 13 c3b9yA_ 17.6 4 PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter family rh-like protein; PDBTitle: crystal structure of the nitrosomonas europaea rh protein 14 d1pw4a_ 17.4 11 Fold:MFS general substrate transporter Superfamily:MFS general substrate transporter Family:Glycerol-3-phosphate transporter 15 c2l2tA_ 17.4 11 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain 16 d1fftb2 14.9 9 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 17 c2yiuE_ 13.8 15 PDB header:oxidoreductase Chain: E: PDB Molecule:cytochrome c1, heme protein; PDBTitle: x-ray structure of the dimeric cytochrome bc1 complex from2 the soil bacterium paracoccus denitrificans at 2.73 angstrom resolution 18 c2k21A_ 13.8 14 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily e PDBTitle: nmr structure of human kcne1 in lmpg micelles at ph 6.0 and2 40 degree c 19 c2kncA_ 13.8 11 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 20 c1p84D_ 13.3 15 PDB header:oxidoreductase Chain: D: PDB Molecule:cytochrome c1, heme protein; PDBTitle: hdbt inhibited yeast cytochrome bc1 complex 21 c2fynH_ not modelled 13.2 19 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c1; PDBTitle: crystal structure analysis of the double mutant rhodobacter2 sphaeroides bc1 complex 22 c1zrtD_ not modelled 12.4 11 PDB header:oxidoreductase/metal transport Chain: D: PDB Molecule:cytochrome c1; PDBTitle: rhodobacter capsulatus cytochrome bc1 complex with2 stigmatellin bound 23 d3ehbb2 not modelled 12.0 11 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 24 c3cwbQ_ not modelled 11.6 13 PDB header:oxidoreductase Chain: Q: PDB Molecule:mitochondrial cytochrome c1, heme protein; PDBTitle: chicken cytochrome bc1 complex inhibited by an iodinated analogue of2 the polyketide crocacin-d 25 c2w2hD_ not modelled 11.2 11 PDB header:rna-binding protein Chain: D: PDB Molecule:protein tat; PDBTitle: structural basis of transcription activation by the cyclin2 t1-tat-tar rna complex from eiav 26 d3dtub2 not modelled 11.1 16 Fold:Transmembrane helix hairpin Superfamily:Cytochrome c oxidase subunit II-like, transmembrane region Family:Cytochrome c oxidase subunit II-like, transmembrane region 27 c2jo1A_ not modelled 10.5 14 PDB header:hydrolase regulator Chain: A: PDB Molecule:phospholemman; PDBTitle: structure of the na,k-atpase regulatory protein fxyd1 in2 micelles 28 c2zkry_ not modelled 10.4 27 PDB header:ribosomal protein/rna Chain: Y: PDB Molecule:5s ribosomal rna; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 29 d2fq3a1 not modelled 9.8 11 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:SWIRM domain 30 c3qnqD_ not modelled 9.7 11 PDB header:membrane protein, transport protein Chain: D: PDB Molecule:pts system, cellobiose-specific iic component; PDBTitle: crystal structure of the transporter chbc, the iic component from the2 n,n'-diacetylchitobiose-specific phosphotransferase system 31 c2jp3A_ not modelled 9.7 14 PDB header:transcription Chain: A: PDB Molecule:fxyd domain-containing ion transport regulator 4; PDBTitle: solution structure of the human fxyd4 (chif) protein in sds2 micelles 32 d2auwa1 not modelled 9.6 12 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:NE0471 C-terminal domain-like 33 c1tz5A_ not modelled 9.4 21 PDB header:hormone/growth factor Chain: A: PDB Molecule:chimera of pancreatic hormone and neuropeptide y; PDBTitle: [pnpy19-23]-hpp bound to dpc micelles 34 c2ks1B_ not modelled 9.3 13 PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation 35 d1lmma_ not modelled 9.2 33 Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:omega toxin-like Family:Spider toxins 36 c1ronA_ not modelled 9.2 7 PDB header:neuropeptide Chain: A: PDB Molecule:neuropeptide y; PDBTitle: nmr solution structure of human neuropeptide y 37 c2kncB_ not modelled 9.1 26 PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex 38 c2dezA_ not modelled 9.0 0 PDB header:neuropeptide Chain: A: PDB Molecule:peptide yy; PDBTitle: structure of human pyy 39 c1d6uB_ not modelled 9.0 29 PDB header:oxidoreductase Chain: B: PDB Molecule:copper amine oxidase; PDBTitle: crystal structure of e. coli amine oxidase anaerobically reduced with2 beta-phenylethylamine 40 c2bf9A_ not modelled 8.9 7 PDB header:hormone Chain: A: PDB Molecule:pancreatic hormone; PDBTitle: anisotropic refinement of avian (turkey) pancreatic2 polypeptide at 0.99 angstroms resolution. 41 c3njcA_ not modelled 8.8 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yslb protein; PDBTitle: crystal structure of the yslb protein from bacillus subtilis.2 northeast structural genomics consortium target sr460. 42 c1ujlA_ not modelled 8.7 24 PDB header:membrane protein Chain: A: PDB Molecule:potassium voltage-gated channel subfamily h PDBTitle: solution structure of the herg k+ channel s5-p2 extracellular linker 43 d1qbjc_ not modelled 8.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 44 d1qgpa_ not modelled 8.4 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 45 c2cpbA_ not modelled 8.4 24 PDB header:viral protein Chain: A: PDB Molecule:m13 major coat protein; PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures 46 d2e74g1 not modelled 8.3 20 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 47 d2gxba1 not modelled 8.2 18 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 48 c2b9sB_ not modelled 8.0 15 PDB header:isomerase/dna Chain: B: PDB Molecule:dna topoisomerase i-like protein; PDBTitle: crystal structure of heterodimeric l. donovani2 topoisomerase i-vanadate-dna complex 49 d1ez3a_ not modelled 7.8 15 Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins 50 c2auwB_ not modelled 7.7 12 PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein ne0471; PDBTitle: crystal structure of putative dna binding protein ne0471 from2 nitrosomonas europaea atcc 19718 51 d1v54i_ not modelled 7.4 28 Fold:Single transmembrane helix Superfamily:Mitochondrial cytochrome c oxidase subunit VIc Family:Mitochondrial cytochrome c oxidase subunit VIc 52 d1zela1 not modelled 7.3 14 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Rv2827c N-terminal domain-like 53 d2iuba2 not modelled 7.3 5 Fold:Transmembrane helix hairpin Superfamily:Magnesium transport protein CorA, transmembrane region Family:Magnesium transport protein CorA, transmembrane region 54 c2k1aA_ not modelled 7.2 6 PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment 55 c2zfdB_ not modelled 7.1 14 PDB header:signaling protein/transferase Chain: B: PDB Molecule:putative uncharacterized protein t20l15_90; PDBTitle: the crystal structure of plant specific calcium binding protein atcbl22 in complex with the regulatory domain of atcipk14 56 c3o2pE_ not modelled 7.1 5 PDB header:ligase, cell cycle Chain: E: PDB Molecule:cell division control protein 53; PDBTitle: a dual e3 mechanism for rub1 ligation to cdc53: dcn1(p)-cdc53(whb) 57 d1rh5a_ not modelled 7.0 11 Fold:Preprotein translocase SecY subunit Superfamily:Preprotein translocase SecY subunit Family:Preprotein translocase SecY subunit 58 c1fftG_ not modelled 7.0 11 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 59 d2r6gf1 not modelled 6.9 15 Fold:MalF N-terminal region-like Superfamily:MalF N-terminal region-like Family:MalF N-terminal region-like 60 c1tvtA_ not modelled 6.9 11 PDB header:transcription regulation Chain: A: PDB Molecule:transactivator protein; PDBTitle: structure of the equine infectious anemia virus tat protein 61 c3ixsF_ not modelled 6.9 20 PDB header:protein binding Chain: F: PDB Molecule:ring1 and yy1-binding protein; PDBTitle: ring1b c-terminal domain/rybp c-terminal domain complex 62 c1v55B_ not modelled 6.8 5 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state 63 c3rkoK_ not modelled 6.8 15 PDB header:oxidoreductase Chain: K: PDB Molecule:nadh-quinone oxidoreductase subunit k; PDBTitle: crystal structure of the membrane domain of respiratory complex i from2 e. coli at 3.0 angstrom resolution 64 d1joya_ not modelled 6.8 15 Fold:ROP-like Superfamily:Homodimeric domain of signal transducing histidine kinase Family:Homodimeric domain of signal transducing histidine kinase 65 d1co4a_ not modelled 6.8 18 Fold:Zinc domain conserved in yeast copper-regulated transcription factors Superfamily:Zinc domain conserved in yeast copper-regulated transcription factors Family:Zinc domain conserved in yeast copper-regulated transcription factors 66 d2h8pc1 not modelled 6.7 17 Fold:Voltage-gated potassium channels Superfamily:Voltage-gated potassium channels Family:Voltage-gated potassium channels 67 d1iwga7 not modelled 6.7 12 Fold:Multidrug efflux transporter AcrB transmembrane domain Superfamily:Multidrug efflux transporter AcrB transmembrane domain Family:Multidrug efflux transporter AcrB transmembrane domain 68 d1k18a_ not modelled 6.6 7 Fold:Zinc finger domain of DNA polymerase-alpha Superfamily:Zinc finger domain of DNA polymerase-alpha Family:Zinc finger domain of DNA polymerase-alpha 69 d1j75a_ not modelled 6.5 16 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Z-DNA binding domain 70 c1u7mB_ not modelled 6.5 18 PDB header:de novo protein Chain: B: PDB Molecule:four-helix bundle model; PDBTitle: solution structure of a diiron protein model: due ferri(ii)2 turn mutant 71 c3jsrA_ not modelled 6.5 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:all0216 protein; PDBTitle: x-ray structure of all0216 protein from nostoc sp. pcc 7120 at the2 resolution 1.8a. northeast structural genomics consortium target3 nsr236 72 c3iz5h_ not modelled 6.5 22 PDB header:ribosome Chain: H: PDB Molecule:60s ribosomal protein l7a (l7ae); PDBTitle: localization of the large subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome 73 c1vf5G_ not modelled 6.4 20 PDB header:photosynthesis Chain: G: PDB Molecule:protein pet g; PDBTitle: crystal structure of cytochrome b6f complex from m.laminosus 74 d1vf5g_ not modelled 6.4 20 Fold:Single transmembrane helix Superfamily:PetG subunit of the cytochrome b6f complex Family:PetG subunit of the cytochrome b6f complex 75 c3izbO_ not modelled 6.4 29 PDB header:ribosome Chain: O: PDB Molecule:40s ribosomal protein rps13 (s15p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome 76 c2wj8N_ not modelled 6.3 29 PDB header:rna binding protein/rna Chain: N: PDB Molecule:nucleoprotein; PDBTitle: respiratory syncitial virus ribonucleoprotein 77 c3zquA_ not modelled 6.3 43 PDB header:lyase Chain: A: PDB Molecule:probable aromatic acid decarboxylase; PDBTitle: structure of a probable aromatic acid decarboxylase 78 c2rq2A_ not modelled 6.2 24 PDB header:antibiotic Chain: A: PDB Molecule:big defensin; PDBTitle: the solution structure of the n-terminal fragment of big2 defensin 79 d2axti1 not modelled 6.1 21 Fold:Single transmembrane helix Superfamily:Photosystem II reaction center protein I, PsbI Family:PsbI-like 80 c2o5gB_ not modelled 6.0 18 PDB header:metal binding protein Chain: B: PDB Molecule:smooth muscle myosin light chain kinase peptide; PDBTitle: calmodulin-smooth muscle light chain kinase peptide complex 81 d1ldja1 not modelled 6.0 20 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:SCF ubiquitin ligase complex WHB domain 82 c4a1bB_ not modelled 6.0 14 PDB header:ribosome Chain: B: PDB Molecule:rpl39; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 26s rrna and3 proteins of molecule 3. 83 d1iuya_ not modelled 6.0 26 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:SCF ubiquitin ligase complex WHB domain 84 d2b8ta2 not modelled 5.9 17 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:Type II thymidine kinase zinc finger 85 c2zkr3_ not modelled 5.9 11 PDB header:ribosomal protein/rna Chain: 3: PDB Molecule:60s ribosomal protein l39e; PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map 86 c2wwaA_ not modelled 5.9 10 PDB header:ribosome Chain: A: PDB Molecule:sec sixty-one protein homolog; PDBTitle: cryo-em structure of idle yeast ssh1 complex bound to the2 yeast 80s ribosome 87 d1fcla_ not modelled 5.9 30 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 88 c3rj1P_ not modelled 5.9 9 PDB header:transcription Chain: P: PDB Molecule:mediator of rna polymerase ii transcription subunit 17; PDBTitle: architecture of the mediator head module 89 d3cx5d2 not modelled 5.9 12 Fold:Single transmembrane helix Superfamily:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor Family:Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 90 c2eqrA_ not modelled 5.9 14 PDB header:transcription Chain: A: PDB Molecule:nuclear receptor corepressor 1; PDBTitle: solution structure of the first sant domain from human2 nuclear receptor corepressor 1 91 d1qzua_ not modelled 5.8 14 Fold:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Superfamily:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD Family:Homo-oligomeric flavin-containing Cys decarboxylases, HFCD 92 c2xznZ_ not modelled 5.8 15 PDB header:ribosome Chain: Z: PDB Molecule:rps21e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2 93 d2bcgg3 not modelled 5.7 15 Fold:FAD-linked reductases, C-terminal domain Superfamily:FAD-linked reductases, C-terminal domain Family:GDI-like 94 d1mvka_ not modelled 5.7 20 Fold:beta-Grasp (ubiquitin-like) Superfamily:Immunoglobulin-binding domains Family:Immunoglobulin-binding domains 95 c3p5nA_ not modelled 5.7 15 PDB header:transport protein Chain: A: PDB Molecule:riboflavin uptake protein; PDBTitle: structure and mechanism of the s component of a bacterial ecf2 transporter 96 c3ndhA_ not modelled 5.7 8 PDB header:hydrolase/dna Chain: A: PDB Molecule:restriction endonuclease thai; PDBTitle: restriction endonuclease in complex with substrate dna 97 c1m57H_ not modelled 5.7 11 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 98 c2l9uA_ not modelled 5.7 16 PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-3; PDBTitle: spatial structure of dimeric erbb3 transmembrane domain 99 c1w8xP_ not modelled 5.7 10 PDB header:virus Chain: P: PDB Molecule:protein p16; PDBTitle: structural analysis of prd1