Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	K	I	P	L	G	T	T	D	I	T	L	S	R	M	G	L	G	T	W	A	I	G	G	G	P	A	W	N	G	D	L	D	R	Q	I	C	I	D	T	I	L	E	A	H	R	C	G	I	N	L	I	D	T	A	P	G	Y	N
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?																				?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		F	G	N	S	E	V	I	V	G	Q	A	L	K	K	L	P	R	E	Q	V	V	V	E	T	K	C	G	I	V	W	E	R	K	G	S	L	F	N	K	V	G	D	R	Q	L	Y	K	N	L	S	P	E	S	I	R	E	E	V	A	A
Secondary structure
SS confidence
Disorder																																	?	?	?	?	?	?				?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	L	Q	R	L	G	I	D	Y	I	D	I	Y	M	T	H	W	Q	S	V	P	P	F	F	T	P	I	A	E	T	V	A	V	L	N	E	L	K	S	E	G	K	I	R	A	I	G	A	A	N	V	D	A	D	H	I	R	E	Y	L
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Q	Y	G	E	L	D	I	I	Q	A	K	Y	S	I	L	D	R	A	M	E	N	E	L	L	P	L	C	R	D	N	G	I	V	V	Q	V	Y	S	P	L	E	Q	G	L	L	T	G	T	I	T	R	D	Y	V	P	G	G	A	R	A
Secondary structure
SS confidence
Disorder																																																				?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		N	K	V	W	F	Q	R	E	N	M	L	K	V	I	D	M	L	E	Q	W	Q	P	L	C	A	R	Y	Q	C	T	I	P	T	L	A	L	A	W	I	L	K	Q	S	D	L	I	S	I	L	S	G	A	T	A	P	E	Q	V	R	E
Secondary structure
SS confidence
Disorder		?			?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Sequence		N	V	A	A	L	N	I	N	L	S	D	A	D	A	T	L	M	R	E	M	A	E	A	L	E	R
Secondary structure
SS confidence
Disorder																									?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1lqa chain A Region: 1 - 325 Aligned: 313 Modelled: 319 Confidence: 100.0% Identity: 29% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1pyf chain A Region: 2 - 320 Aligned: 305 Modelled: 319 Confidence: 100.0% Identity: 32% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3n2t chain A Region: 1 - 325 Aligned: 313 Modelled: 325 Confidence: 100.0% Identity: 34% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans Phyre2 PDB 1pz1 chain A Region: 1 - 324 Aligned: 309 Modelled: 323 Confidence: 100.0% Identity: 36% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3erp chain A Region: 1 - 322 Aligned: 287 Modelled: 300 Confidence: 100.0% Identity: 30% PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium Phyre2 PDB 3eau chain A domain 1 Region: 3 - 324 Aligned: 303 Modelled: 315 Confidence: 100.0% Identity: 29% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3lut chain A Region: 3 - 324 Aligned: 303 Modelled: 311 Confidence: 100.0% Identity: 29% PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2; PDBTitle: a structural model for the full-length shaker potassium channel kv1.2 Phyre2 PDB 3n6q chain F Region: 1 - 325 Aligned: 288 Modelled: 291 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: F: PDB Molecule:yghz aldo-keto reductase; PDBTitle: crystal structure of yghz from e. coli Phyre2 PDB 1ur3 chain M Region: 1 - 325 Aligned: 290 Modelled: 304 Confidence: 100.0% Identity: 19% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1gve chain A Region: 14 - 326 Aligned: 289 Modelled: 298 Confidence: 100.0% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1ynp chain A Region: 1 - 323 Aligned: 273 Modelled: 286 Confidence: 100.0% Identity: 36% PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form) Phyre2 PDB 2bp1 chain C Region: 12 - 325 Aligned: 288 Modelled: 299 Confidence: 100.0% Identity: 26% PDB header:oxidoreductase Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2; PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph Phyre2 PDB 1q5m chain A Region: 1 - 326 Aligned: 277 Modelled: 290 Confidence: 100.0% Identity: 22% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1j96 chain A Region: 1 - 325 Aligned: 277 Modelled: 289 Confidence: 100.0% Identity: 22% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3h7u chain A Region: 1 - 320 Aligned: 264 Modelled: 280 Confidence: 100.0% Identity: 25% PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c9 Phyre2 PDB 1qwk chain A Region: 2 - 325 Aligned: 280 Modelled: 306 Confidence: 100.0% Identity: 21% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 1afs chain A Region: 1 - 325 Aligned: 277 Modelled: 289 Confidence: 100.0% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3up8 chain B Region: 5 - 320 Aligned: 252 Modelled: 269 Confidence: 100.0% Identity: 28% PDB header:oxidoreductase Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b; PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b Phyre2 PDB 1frb chain A Region: 3 - 325 Aligned: 270 Modelled: 286 Confidence: 100.0% Identity: 21% Fold: TIM beta/alpha-barrel Superfamily: NAD(P)-linked oxidoreductase Family: Aldo-keto reductases (NADP) Phyre2 PDB 3f7j chain B Region: 2 - 320 Aligned: 253 Modelled: 268 Confidence: 100.0% Identity: 27% PDB header:oxidoreductase Chain: B: PDB Molecule:yvgn protein; PDBTitle: b.subtilis yvgn Phyre2 1 d1lqaa_ 2 d1pyfa_ 3 c3n2tA_ 4 d1pz1a_ 5 c3erpA_ 6 d3eaua1 7 c3lutA_ 8 c3n6qF_ 9 d1ur3m_ 10 d1gvea_ 11 c1ynpA_ 12 c2bp1C_ 13 d1q5ma_ 14 d1j96a_ 15 c3h7uA_ 16 d1qwka_ 17 d1afsa_ 18 c3up8B_ 19 d1frba_ 20 c3f7jB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1lqaa_ 100.0 29 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 2 d1pyfa_ 100.0 32 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 3 c3n2tA_ 100.0 34 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of the glycerol dehydrogenase akr11b4 from gluconobacter2 oxydans 4 d1pz1a_ 100.0 36 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 5 c3erpA_ 100.0 30 PDB header:oxidoreductase Chain: A: PDB Molecule:putative oxidoreductase; PDBTitle: structure of idp01002, a putative oxidoreductase from and essential2 gene of salmonella typhimurium 6 d3eaua1 100.0 29 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 7 c3lutA_ 100.0 29 PDB header:membrane protein Chain: A: PDB Molecule:voltage-gated potassium channel subunit beta-2; PDBTitle: a structural model for the full-length shaker potassium channel kv1.2 8 c3n6qF_ 100.0 27 PDB header:oxidoreductase Chain: F: PDB Molecule:yghz aldo-keto reductase; PDBTitle: crystal structure of yghz from e. coli 9 d1ur3m_ 100.0 19 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 10 d1gvea_ 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 11 c1ynpA_ 100.0 36 PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: aldo-keto reductase akr11c1 from bacillus halodurans (apo form) 12 c2bp1C_ 100.0 26 PDB header:oxidoreductase Chain: C: PDB Molecule:aflatoxin b1 aldehyde reductase member 2; PDBTitle: structure of the aflatoxin aldehyde reductase in complex2 with nadph 13 d1q5ma_ 100.0 22 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 14 d1j96a_ 100.0 22 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 15 c3h7uA_ 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c9 16 d1qwka_ 100.0 21 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 17 d1afsa_ 100.0 18 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 18 c3up8B_ 100.0 28 PDB header:oxidoreductase Chain: B: PDB Molecule:putative 2,5-diketo-d-gluconic acid reductase b; PDBTitle: crystal structure of a putative 2,5-diketo-d-gluconic acid reductase b 19 d1frba_ 100.0 21 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 20 c3f7jB_ 100.0 27 PDB header:oxidoreductase Chain: B: PDB Molecule:yvgn protein; PDBTitle: b.subtilis yvgn 21 d1mi3a_ not modelled 100.0 21 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 22 d1us0a_ not modelled 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 23 d1hqta_ not modelled 100.0 24 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 24 d1s1pa_ not modelled 100.0 22 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 25 c3h7rA_ not modelled 100.0 26 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of the plant stress-response enzyme akr4c8 26 c3buvB_ not modelled 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:3-oxo-5-beta-steroid 4-dehydrogenase; PDBTitle: crystal structure of human delta(4)-3-ketosteroid 5-beta-reductase in2 complex with nadp and hepes. resolution: 1.35 a. 27 c2wztA_ not modelled 100.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:aldo-keto reductase; PDBTitle: crystal structure of a mycobacterium aldo-keto reductase in2 its apo and liganded form 28 c3o0kB_ not modelled 100.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:aldo/keto reductase; PDBTitle: crystal structure of aldo/keto reductase from brucella melitensis 29 d1ah4a_ not modelled 100.0 24 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 30 c1zgdB_ not modelled 100.0 23 PDB header:plant protein Chain: B: PDB Molecule:chalcone reductase; PDBTitle: chalcone reductase complexed with nadp+ at 1.7 angstrom2 resolution 31 d2alra_ not modelled 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 32 d1mzra_ not modelled 100.0 25 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 33 d1c9wa_ not modelled 100.0 23 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 34 d1vp5a_ not modelled 100.0 26 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 35 c3b3dA_ not modelled 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:putative morphine dehydrogenase; PDBTitle: b.subtilis ytbe 36 c2bgsA_ not modelled 100.0 21 PDB header:oxidoreductase Chain: A: PDB Molecule:aldose reductase; PDBTitle: holo aldose reductase from barley 37 d1hw6a_ not modelled 100.0 21 Fold:TIM beta/alpha-barrel Superfamily:NAD(P)-linked oxidoreductase Family:Aldo-keto reductases (NADP) 38 c1vbjB_ not modelled 100.0 24 PDB header:oxidoreductase Chain: B: PDB Molecule:prostaglandin f synthase; PDBTitle: the crystal structure of prostaglandin f synthase from2 trypanosoma brucei 39 c3krbB_ not modelled 100.0 26 PDB header:oxidoreductase Chain: B: PDB Molecule:aldose reductase; PDBTitle: structure of aldose reductase from giardia lamblia at 1.75a resolution 40 c3ln3A_ not modelled 100.0 25 PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodiol dehydrogenase; PDBTitle: crystal structure of putative reductase (np_038806.2) from2 mus musculus at 1.18 a resolution 41 d1jpma1 not modelled 93.3 12 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 42 c3ktcB_ not modelled 80.1 17 PDB header:isomerase Chain: B: PDB Molecule:xylose isomerase; PDBTitle: crystal structure of putative sugar isomerase (yp_050048.1) from2 erwinia carotovora atroseptica scri1043 at 1.54 a resolution 43 c1jpmB_ not modelled 67.6 13 PDB header:isomerase Chain: B: PDB Molecule:l-ala-d/l-glu epimerase; PDBTitle: l-ala-d/l-glu epimerase 44 c3l23A_ not modelled 66.7 10 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of sugar phosphate isomerase/epimerase2 (yp_001303399.1) from parabacteroides distasonis atcc 8503 at 1.70 a3 resolution 45 c3g8rA_ not modelled 62.8 18 PDB header:biosynthetic protein Chain: A: PDB Molecule:probable spore coat polysaccharide biosynthesis protein e; PDBTitle: crystal structure of putative spore coat polysaccharide biosynthesis2 protein e from chromobacterium violaceum atcc 12472 46 c3msyC_ not modelled 59.4 14 PDB header:isomerase Chain: C: PDB Molecule:mandelate racemase/muconate lactonizing enzyme; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing enzyme2 from a marine actinobacterium 47 d2gdqa1 not modelled 57.7 12 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 48 c3ik4A_ not modelled 56.4 12 PDB header:isomerase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing protein; PDBTitle: crystal structure of mandelate racemase/muconate lactonizing protein2 from herpetosiphon aurantiacus 49 c3es8D_ not modelled 54.8 11 PDB header:isomerase, lyase Chain: D: PDB Molecule:muconate cycloisomerase; PDBTitle: crystal structure of divergent enolase from oceanobacillus2 iheyensis complexed with mg and l-malate. 50 c3hf3A_ not modelled 48.8 16 PDB header:oxidoreductase Chain: A: PDB Molecule:chromate reductase; PDBTitle: old yellow enzyme from thermus scotoductus sa-01 51 c1ps9A_ not modelled 44.8 20 PDB header:oxidoreductase Chain: A: PDB Molecule:2,4-dienoyl-coa reductase; PDBTitle: the crystal structure and reaction mechanism of e. coli 2,4-2 dienoyl coa reductase 52 c3dx5A_ not modelled 43.7 12 PDB header:lyase Chain: A: PDB Molecule:uncharacterized protein asbf; PDBTitle: crystal structure of the probable 3-dhs dehydratase asbf involved in2 the petrobactin synthesis from bacillus anthracis 53 d3bofa2 not modelled 42.9 14 Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase 54 d1xkya1 not modelled 41.4 12 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 55 d1r0ma1 not modelled 41.2 16 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 56 d1ps9a1 not modelled 38.8 13 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 57 c3dg7B_ not modelled 38.1 11 PDB header:isomerase Chain: B: PDB Molecule:muconate cycloisomerase; PDBTitle: crystal structure of muconate lactonizing enzyme from mucobacterium2 smegmatis complexed with muconolactone 58 d1nu5a1 not modelled 36.7 11 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 59 d1sjda1 not modelled 32.6 14 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 60 c2qdeA_ not modelled 32.3 12 PDB header:lyase Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family PDBTitle: crystal structure of mandelate racemase/muconate lactonizing family2 protein from azoarcus sp. ebn1 61 c3smaD_ not modelled 32.2 20 PDB header:transferase Chain: D: PDB Molecule:frbf; PDBTitle: a new n-acetyltransferase fold in the structure and mechanism of the2 phosphonate biosynthetic enzyme frbf 62 c2qgyA_ not modelled 29.6 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:enolase from the environmental genome shotgun PDBTitle: crystal structure of an enolase from the environmental2 genome shotgun sequencing of the sargasso sea 63 d1yeya1 not modelled 29.6 15 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 64 d1wuea1 not modelled 29.1 18 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 65 c1nu5A_ not modelled 28.6 10 PDB header:isomerase Chain: A: PDB Molecule:chloromuconate cycloisomerase; PDBTitle: crystal structure of pseudomonas sp. p51 chloromuconate lactonizing2 enzyme 66 d1x87a_ not modelled 28.3 22 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 67 c2chrA_ not modelled 27.4 12 PDB header:isomerase Chain: A: PDB Molecule:chloromuconate cycloisomerase; PDBTitle: a re-evaluation of the crystal structure of chloromuconate2 cycloisomerase 68 d1rioa_ not modelled 26.7 14 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 69 c2nqlB_ not modelled 26.3 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:isomerase/lactonizing enzyme; PDBTitle: crystal structure of a member of the enolase superfamily from2 agrobacterium tumefaciens 70 d1a0ea_ not modelled 26.3 22 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 71 c3bdkB_ not modelled 26.2 12 PDB header:lyase Chain: B: PDB Molecule:d-mannonate dehydratase; PDBTitle: crystal structure of streptococcus suis mannonate2 dehydratase complexed with substrate analogue 72 d1a0ca_ not modelled 25.5 17 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:Xylose isomerase 73 c2fknC_ not modelled 25.3 28 PDB header:lyase Chain: C: PDB Molecule:urocanate hydratase; PDBTitle: crystal structure of urocanase from bacillus subtilis 74 c3bolB_ not modelled 24.9 14 PDB header:transferase Chain: B: PDB Molecule:5-methyltetrahydrofolate s-homocysteine PDBTitle: cobalamin-dependent methionine synthase (1-566) from2 thermotoga maritima complexed with zn2+ 75 d1vlia2 not modelled 24.6 10 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:NeuB-like 76 c3pueA_ not modelled 24.5 11 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of the complex of dhydrodipicolinate synthase from2 acinetobacter baumannii with lysine at 2.6a resolution 77 c3noeA_ not modelled 24.3 14 PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from pseudomonas2 aeruginosa 78 c1vliA_ not modelled 24.3 9 PDB header:biosynthetic protein Chain: A: PDB Molecule:spore coat polysaccharide biosynthesis protein spse; PDBTitle: crystal structure of spore coat polysaccharide biosynthesis protein2 spse (bsu37870) from bacillus subtilis at 2.38 a resolution 79 c3e4fB_ not modelled 23.8 20 PDB header:transferase Chain: B: PDB Molecule:aminoglycoside n3-acetyltransferase; PDBTitle: crystal structure of ba2930- a putative aminoglycoside n3-2 acetyltransferase from bacillus anthracis 80 c2oz8B_ not modelled 23.7 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mll7089 protein; PDBTitle: crystal structure of putative mandelate racemase from mesorhizobium2 loti 81 d1uwka_ not modelled 23.6 22 Fold:Urocanase Superfamily:Urocanase Family:Urocanase 82 d2chra1 not modelled 22.5 11 Fold:TIM beta/alpha-barrel Superfamily:Enolase C-terminal domain-like Family:D-glucarate dehydratase-like 83 c2rfgB_ not modelled 22.4 12 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution 84 c2k6xA_ not modelled 21.7 23 PDB header:transcription Chain: A: PDB Molecule:rna polymerase sigma factor rpod; PDBTitle: autoregulation of a group 1 bacterial sigma factor involves2 the formation of a region 1.1- induced compacted structure 85 d1f6ya_ not modelled 21.4 11 Fold:TIM beta/alpha-barrel Superfamily:Dihydropteroate synthetase-like Family:Methyltetrahydrofolate-utiluzing methyltransferases 86 c3daqB_ not modelled 20.5 11 PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from methicillin-2 resistant staphylococcus aureus 87 c2ps2A_ not modelled 19.5 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative mandelate racemase/muconate lactonizing PDBTitle: crystal structure of putative mandelate racemase/muconate2 lactonizing enzyme from aspergillus oryzae 88 d1lmb3_ not modelled 19.2 15 Fold:lambda repressor-like DNA-binding domains Superfamily:lambda repressor-like DNA-binding domains Family:Phage repressors 89 d1vjia_ not modelled 19.1 15 Fold:TIM beta/alpha-barrel Superfamily:FMN-linked oxidoreductases Family:FMN-linked oxidoreductases 90 c3px5A_ not modelled 19.1 13 PDB header:metal binding protein Chain: A: PDB Molecule:enzyme of enolase superfamily; PDBTitle: structure of efi enolase target en500555, a putative dipeptide2 epimerase: apo structure 91 c1sjaA_ not modelled 18.8 14 PDB header:lyase, isomerase Chain: A: PDB Molecule:n-acylamino acid racemase; PDBTitle: x-ray structure of o-succinylbenzoate synthase complexed2 with n-acetylmethionine 92 d1olta_ not modelled 18.6 21 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN 93 d1vcva1 not modelled 18.2 13 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 94 d2nyga1 not modelled 18.0 16 Fold:TTHA0583/YokD-like Superfamily:TTHA0583/YokD-like Family:Aminoglycoside 3-N-acetyltransferase-like 95 c2zvrA_ not modelled 17.7 9 PDB header:isomerase Chain: A: PDB Molecule:uncharacterized protein tm_0416; PDBTitle: crystal structure of a d-tagatose 3-epimerase-related2 protein from thermotoga maritima 96 c1wueA_ not modelled 17.7 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mandelate racemase/muconate lactonizing enzyme family PDBTitle: crystal structure of protein gi:29375081, unknown member of enolase2 superfamily from enterococcus faecalis v583 97 c3dfyJ_ not modelled 17.5 13 PDB header:isomerase Chain: J: PDB Molecule:muconate cycloisomerase; PDBTitle: crystal structure of apo dipeptide epimerase from2 thermotoga maritima 98 c3ju2A_ not modelled 17.4 10 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 99 d1qbaa3 not modelled 16.8 33 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0