Email l.a.kelley@imperial.ac.uk Description P76270 Date Thu Jan 5 12:21:25 GMT 2012 Unique Job ID 21134058e340a976

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c1vhmB_ 100.0 100 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein yebr; PDBTitle: crystal structure of an hypothetical protein 2 d1vhma_ 100.0 100 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 3 c3ksiA_ 100.0 51 PDB header:oxidoreductase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: structure of frmsr of staphylococcus aureus (complex with 2-propanol) 4 c3mmhA_ 99.9 43 PDB header:oxidoreductase Chain: A: PDB Molecule:methionine-r-sulfoxide reductase; PDBTitle: x-ray structure of free methionine-r-sulfoxide reductase from2 neisseria meningitidis in complex with its substrate 5 d1f5ma_ 99.9 40 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 6 c3p01C_ 99.9 16 PDB header:signaling protein Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 7 d2o9ca1 99.8 12 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 8 c3p01A_ 99.8 15 PDB header:signaling protein Chain: A: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of two-component response regulator from nostoc sp.2 pcc 7120 9 c1mc0A_ 99.8 18 PDB header:hydrolase Chain: A: PDB Molecule:3',5'-cyclic nucleotide phosphodiesterase 2a; PDBTitle: regulatory segment of mouse 3',5'-cyclic nucleotide phosphodiesterase2 2a, containing the gaf a and gaf b domains 10 c3o5yA_ 99.8 22 PDB header:transcription regulator Chain: A: PDB Molecule:sensor protein; PDBTitle: the crystal structure of the gaf domain of a two-component sensor2 histidine kinase from bacillus halodurans to 2.45a 11 c3trcA_ 99.8 16 PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of the gaf domain from a phosphoenolpyruvate-protein2 phosphotransferase (ptsp) from coxiella burnetii 12 d2veaa1 99.8 8 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 13 c3ci6B_ 99.8 19 PDB header:transferase Chain: B: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: crystal structure of the gaf domain from acinetobacter2 phosphoenolpyruvate-protein phosphotransferase 14 c2zmfA_ 99.8 13 PDB header:hydrolase Chain: A: PDB Molecule:camp and camp-inhibited cgmp 3',5'-cyclic phosphodiesterase PDBTitle: crystal structure of the c-terminal gaf domain of human2 phosphodiesterase 10a 15 c3k2nB_ 99.8 9 PDB header:transcription regulator Chain: B: PDB Molecule:sigma-54-dependent transcriptional regulator; PDBTitle: the crystal structure of sigma-54-dependent transcriptional2 regulator domain from chlorobium tepidum tls 16 c3mf0A_ 99.8 14 PDB header:hydrolase Chain: A: PDB Molecule:cgmp-specific 3',5'-cyclic phosphodiesterase; PDBTitle: crystal structure of pde5a gaf domain (89-518) 17 c3eeaB_ 99.8 18 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:gaf domain/hd domain protein; PDBTitle: the crystal structure of the gaf domain/hd domain protein2 from geobacter sulfurreducens 18 c3dbaB_ 99.8 14 PDB header:hydrolase Chain: B: PDB Molecule:cone cgmp-specific 3',5'-cyclic phosphodiesterase subunit PDBTitle: crystal structure of the cgmp-bound gaf a domain from the2 photoreceptor phosphodiesterase 6c 19 d2oola1 99.8 10 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 20 c3e0yA_ 99.8 18 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a conserved domain from a protein of2 geobacter sulfurreducens pca 21 c3ibjB_ not modelled 99.8 13 PDB header:hydrolase Chain: B: PDB Molecule:cgmp-dependent 3',5'-cyclic phosphodiesterase; PDBTitle: x-ray structure of pde2a 22 c3oovA_ not modelled 99.8 19 PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein, putative; PDBTitle: crystal structure of a methyl-accepting chemotaxis protein, residues2 122 to 287 23 c2vjwA_ not modelled 99.8 16 PDB header:hydrolase Chain: A: PDB Molecule:gaf family protein; PDBTitle: crystal structure of the second gaf domain of devs from2 mycobacterium smegmatis 24 c1ykdB_ not modelled 99.8 18 PDB header:lyase Chain: B: PDB Molecule:adenylate cyclase; PDBTitle: crystal structure of the tandem gaf domains from a cyanobacterial2 adenylyl cyclase: novel modes of ligand-binding and dimerization 25 c2lb5A_ not modelled 99.7 17 PDB header:transferase Chain: A: PDB Molecule:sensor histidine kinase; PDBTitle: refined structural basis for the photoconversion of a phytochrome to2 the activated far-red light-absorbing form 26 c3hcyB_ not modelled 99.7 14 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative two-component sensor histidine kinase protein; PDBTitle: the crystal structure of the domain of putative two-component sensor2 histidine kinase protein from sinorhizobium meliloti 1021 27 c2qybA_ not modelled 99.7 17 PDB header:membrane protein Chain: A: PDB Molecule:membrane protein, putative; PDBTitle: crystal structure of the gaf domain region of putative membrane2 protein from geobacter sulfurreducens pca 28 c2w3gA_ not modelled 99.7 21 PDB header:transferase Chain: A: PDB Molecule:two component sensor histidine kinase devs (gaf PDBTitle: air-oxidized structure of the first gaf domain of2 mycobacterium tuberculosis doss 29 c2k31A_ not modelled 99.7 17 PDB header:hydrolase Chain: A: PDB Molecule:phosphodiesterase 5a, cgmp-specific; PDBTitle: solution structure of cgmp-binding gaf domain of2 phosphodiesterase 5 30 d2k2na1 not modelled 99.7 17 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 31 c2oolA_ not modelled 99.6 9 PDB header:signaling protein Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of the chromophore-binding domain of an unusual2 bacteriophytochrome rpbphp3 from r. palustris 32 d1mc0a1 not modelled 99.6 16 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 33 d3c2wa1 not modelled 99.6 11 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 34 d1mc0a2 not modelled 99.6 18 Fold:Profilin-like Superfamily:GAF domain-like Family:GAF domain 35 c3e98B_ not modelled 99.5 17 PDB header:unknown function Chain: B: PDB Molecule:gaf domain of unknown function; PDBTitle: crystal structure of a gaf domain containing protein that belongs to2 pfam duf484 family (pa5279) from pseudomonas aeruginosa at 2.43 a3 resolution 36 c2o9bA_ not modelled 99.4 10 PDB header:transferase Chain: A: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of bacteriophytochrome chromophore binding domain 37 c3c2wB_ not modelled 99.4 10 PDB header:signaling protein Chain: B: PDB Molecule:bacteriophytochrome; PDBTitle: crystal structure of the photosensory core domain of p.2 aeruginosa bacteriophytochrome pabphp in the pfr state 38 c2xssB_ not modelled 99.3 17 PDB header:hydrolase Chain: B: PDB Molecule:cgmp-specific 3', 5'-cyclic phosphodiesterase; PDBTitle: crystal structure of gafb from the human phosphodiesterase 5 39 c2veaA_ not modelled 99.3 10 PDB header:transferase Chain: A: PDB Molecule:phytochrome-like protein cph1; PDBTitle: the complete sensory module of the cyanobacterial2 phytochrome cph1 in the pr-state. 40 c2w1rA_ not modelled 98.7 15 PDB header:transcription Chain: A: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of the c-terminal domain of b. subtilis2 spovt 41 c2w1tB_ not modelled 98.3 14 PDB header:transcription Chain: B: PDB Molecule:stage v sporulation protein t; PDBTitle: crystal structure of b. subtilis spovt 42 c2gx5B_ not modelled 96.7 11 PDB header:transcription Chain: B: PDB Molecule:gtp-sensing transcriptional pleiotropic repressor cody; PDBTitle: n-terminal gaf domain of transcriptional pleiotropic repressor cody 43 c3qp1A_ not modelled 93.1 10 PDB header:transcription Chain: A: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir ligand-binding domain bound to the native2 ligand c6-hsl 44 d1l3la2 not modelled 92.2 10 Fold:Profilin-like Superfamily:Pheromone-binding domain of LuxR-like quorum-sensing transcription factors Family:Pheromone-binding domain of LuxR-like quorum-sensing transcription factors 45 c2avxA_ not modelled 78.8 10 PDB header:transcription Chain: A: PDB Molecule:regulatory protein sdia; PDBTitle: solution structure of e coli sdia1-171 46 c3qp5C_ not modelled 77.7 11 PDB header:transcription Chain: C: PDB Molecule:cvir transcriptional regulator; PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl) 47 c3citB_ not modelled 75.4 22 PDB header:transferase Chain: B: PDB Molecule:sensor histidine kinase; PDBTitle: crystal structure of the gaf domain of a putative sensor histidine2 kinase from pseudomonas syringae pv. tomato 48 d1tf1a_ not modelled 75.3 15 Fold:Profilin-like Superfamily:GAF domain-like Family:IclR ligand-binding domain-like 49 c1yspA_ not modelled 70.1 13 PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator kdgr; PDBTitle: crystal structure of the c-terminal domain of e. coli transcriptional2 regulator kdgr. 50 c2o0yB_ not modelled 64.1 16 PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of putative transcriptional regulator rha1_ro069532 (iclr-family) from rhodococcus sp. 51 c1ysqA_ not modelled 59.8 15 PDB header:gene regulation Chain: A: PDB Molecule:hth-type transcriptional regulator yiaj; PDBTitle: the crystal structure of transcriptional regulator yaij 52 c2g7uB_ not modelled 58.7 15 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:transcriptional regulator; PDBTitle: 2.3 a structure of putative catechol degradative operon regulator from2 rhodococcus sp. rha1 53 c3mq0A_ not modelled 58.3 11 PDB header:transcription repressor Chain: A: PDB Molecule:transcriptional repressor of the blcabc operon; PDBTitle: crystal structure of agobacterium tumefaciens repressor blcr 54 c1stzB_ not modelled 47.5 10 PDB header:transcription Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog; PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution 55 c3d3oA_ not modelled 47.5 10 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator, icir family; PDBTitle: crystal structure of the effector domain of the putative2 transcriptional regulator iclr from acinetobacter sp. adp1 56 c3fpvC_ not modelled 45.8 12 PDB header:heme binding protein Chain: C: PDB Molecule:extracellular haem-binding protein; PDBTitle: crystal structure of hbps 57 d1stza2 not modelled 41.0 10 Fold:Profilin-like Superfamily:GAF domain-like Family:HrcA C-terminal domain-like 58 d2a2la1 not modelled 34.8 17 Fold:Profilin-like Superfamily:GlcG-like Family:GlcG-like 59 c3bjnA_ not modelled 30.9 10 PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, putative; PDBTitle: crystal structure of c-terminal domain of putative transcriptional2 regulator from vibrio cholerae, targeted domain 79-240 60 c3obfA_ not modelled 29.2 13 PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator, iclr family; PDBTitle: crystal structure of putative transcriptional regulator, iclr family;2 targeted domain 129...302 61 d2o9aa1 not modelled 25.4 15 Fold:Profilin-like Superfamily:GAF domain-like Family:IclR ligand-binding domain-like 62 c1mkmA_ not modelled 24.9 11 PDB header:transcription Chain: A: PDB Molecule:iclr transcriptional regulator; PDBTitle: crystal structure of the thermotoga maritima iclr 63 c3e4pB_ not modelled 24.6 10 PDB header:transferase Chain: B: PDB Molecule:c4-dicarboxylate transport sensor protein dctb; PDBTitle: crystal structure of malonate occupied dctb 64 c2uv0G_ not modelled 23.0 16 PDB header:transcription Chain: G: PDB Molecule:transcriptional activator protein lasr; PDBTitle: structure of the p. aeruginosa lasr ligand-binding domain2 bound to its autoinducer 65 c2ia2D_ not modelled 21.3 14 PDB header:transcription Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a putative transcriptional regulator rha061952 from rhodococcus sp. rha1 66 c1h0mD_ not modelled 18.7 13 PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna 67 c3hlyA_ not modelled 15.4 22 PDB header:flavoprotein Chain: A: PDB Molecule:flavodoxin-like domain; PDBTitle: crystal structure of the flavodoxin-like domain from2 synechococcus sp q5mzp6_synp6 protein. northeast structural3 genomics consortium target snr135d. 68 c3r4kD_ not modelled 13.6 13 PDB header:dna binding protein Chain: D: PDB Molecule:transcriptional regulator, iclr family; PDBTitle: crystal structure of a putative iclr transcriptional regulator2 (tm1040_3717) from silicibacter sp. tm1040 at 2.46 a resolution 69 d1p0za_ not modelled 13.5 8 Fold:Profilin-like Superfamily:Sensory domain-like Family:Sensory domain of two-component sensor kinase 70 d1mkma2 not modelled 13.0 13 Fold:Profilin-like Superfamily:GAF domain-like Family:IclR ligand-binding domain-like 71 d3by8a1 not modelled 12.0 11 Fold:Profilin-like Superfamily:Sensory domain-like Family:Sensory domain of two-component sensor kinase 72 c2pfiA_ not modelled 9.9 13 PDB header:transport protein Chain: A: PDB Molecule:chloride channel protein clc-ka; PDBTitle: crystal structure of the cytoplasmic domain of the human2 chloride channel clc-ka 73 c3btpB_ not modelled 9.5 19 PDB header:dna binding protein, chaperone Chain: B: PDB Molecule:protein vire1; PDBTitle: crystal structure of agrobacterium tumefaciens vire2 in complex with2 its chaperone vire1: a novel fold and implications for dna binding 74 c2q0oA_ not modelled 8.3 5 PDB header:transcription Chain: A: PDB Molecule:probable transcriptional activator protein trar; PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing 75 c3fioB_ not modelled 8.0 20 PDB header:nucleotide binding protein, metal bindin Chain: B: PDB Molecule:a cystathionine beta-synthase domain protein PDBTitle: crystal structure of a fragment of a cystathionine beta-2 synthase domain protein fused to a zn-ribbon-like domain 76 d2o16a3 not modelled 7.9 33 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 77 c3fosA_ not modelled 7.4 11 PDB header:transferase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of two-component sensor histidine kinase domain from2 bacillus subtilis subsp. subtilis str. 168 78 c2ev2B_ not modelled 7.3 12 PDB header:lyase Chain: B: PDB Molecule:hypothetical protein rv1264/mt1302; PDBTitle: structure of rv1264n, the regulatory domain of the mycobacterial2 adenylyl cylcase rv1264, at ph 8.5 79 d1y5ha3 not modelled 7.0 13 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 80 c2wukD_ not modelled 7.0 16 PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant 81 c3cagF_ not modelled 7.0 14 PDB header:dna binding protein Chain: F: PDB Molecule:arginine repressor; PDBTitle: crystal structure of the oligomerization domain hexamer of the2 arginine repressor protein from mycobacterium tuberculosis in complex3 with 9 arginines. 82 d2p5ma1 not modelled 6.8 9 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 83 d2rc3a1 not modelled 6.7 33 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 84 c2w0nA_ not modelled 6.7 21 PDB header:transferase Chain: A: PDB Molecule:sensor protein dcus; PDBTitle: plasticity of pas domain and potential role for signal2 transduction in the histidine-kinase dcus 85 c3libA_ not modelled 6.6 21 PDB header:signaling protein Chain: A: PDB Molecule:hypothetical sensory transduction histidine kinase; PDBTitle: crystal structure of the extracellular domain of the putative2 histidine kinase mmhk1s-z3 86 d1k8ib2 not modelled 6.5 13 Fold:MHC antigen-recognition domain Superfamily:MHC antigen-recognition domain Family:MHC antigen-recognition domain 87 d1b4ba_ not modelled 6.4 14 Fold:DCoH-like Superfamily:C-terminal domain of arginine repressor Family:C-terminal domain of arginine repressor 88 d2yzia1 not modelled 6.0 13 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 89 d1pbja3 not modelled 5.6 33 Fold:CBS-domain pair Superfamily:CBS-domain pair Family:CBS-domain pair 90 d2pyqa1 not modelled 5.4 15 Fold:Jann4075-like Superfamily:Jann4075-like Family:Jann4075-like