Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	I	N	F	R	R	N	A	L	Q	L	S	V	A	A	L	F	S	S	A	F	M	A	N	A	A	D	V	P	Q	V	K	V	T	V	T	D	K	Q	C	E	P	M	T	I	T	V	N	A	G	K	T	Q	F	I	I	Q	N	H
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?										?	?	?	?	?	?	?	?	?	?	?	?	?	?													?		?			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	Q	K	A	L	E	W	E	I	L	K	G	V	M	V	V	E	E	R	E	N	I	A	P	G	F	S	Q	K	M	T	A	N	L	Q	P	G	E	Y	D	M	T	C	G	L	L	T	N	P	K	G	K	L	I	V	K	G	E	A	T
Secondary structure
SS confidence
Disorder																																													?	?		?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	D	A	A	Q	S	D	A	L	L	S	L	G	G	A	I	T	A	Y	K	A	Y	V	M	A	E	T	T	Q	L	V	T	D	T	K	A	F	T	D	A	I	K	A	G	D	I	E	K	A	K	A	L	Y	A	P	T	R	Q	H	Y
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	R	I	E	P	I	A	E	L	F	S	D	L	D	G	S	I	D	A	R	E	D	D	Y	E	Q	K	A	A	D	P	K	F	T	G	F	H	R	L	E	K	A	L	F	G	D	N	T	T	K	G	M	D	Q	Y	A	E	Q	L	Y
Secondary structure
SS confidence
Disorder																									?	?		?	?	?				?														?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		T	D	V	V	D	L	Q	K	R	I	S	E	L	A	F	P	P	S	K	V	V	G	G	A	A	G	L	I	E	E	V	A	A	S	K	I	S	G	E	E	D	R	Y	S	H	T	D	L	W	D	F	Q	A	N	V	E	G	S	Q	K
Secondary structure
SS confidence
Disorder																																			?	?	?	?		?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		I	V	D	L	L	R	P	Q	L	Q	K	A	N	P	E	L	L	A	K	V	D	A	N	F	K	K	V	D	T	I	L	A	K	Y	R	T	K	D	G	F	E	T	Y	D	K	L	T	D	A	D	R	N	A	L	K	G	P	I	T	A
Secondary structure
SS confidence
Disorder													?																								?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Sequence		L	A	E	D	L	A	Q	L	R	G	V	L	G	L	D
Secondary structure
SS confidence
Disorder													?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3at7 chain B Region: 127 - 375 Aligned: 249 Modelled: 249 Confidence: 100.0% Identity: 61% PDB header:structural protein Chain: B: PDB Molecule:alginate-binding flagellin; PDBTitle: crystal structure of bacterial cell-surface alginate-binding protein2 algp7 Phyre2 PDB 3pf0 chain A Region: 136 - 374 Aligned: 231 Modelled: 238 Confidence: 100.0% Identity: 17% PDB header:unknown function Chain: A: PDB Molecule:imelysin-like protein; PDBTitle: crystal structure of an imelysin-like protein (psyc_1802) from2 psychrobacter arcticum 273-4 at 2.15 a resolution Phyre2 PDB 3n8u chain B Region: 230 - 372 Aligned: 139 Modelled: 143 Confidence: 99.8% Identity: 22% PDB header:hydrolase Chain: B: PDB Molecule:imelysin peptidase; PDBTitle: crystal structure of an imelysin peptidase (bacova_03801) from2 bacteroides ovatus at 1.44 a resolution Phyre2 PDB 2h47 chain C Region: 29 - 116 Aligned: 88 Modelled: 88 Confidence: 99.2% Identity: 22% PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:azurin; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) Phyre2 PDB 2ccw chain A domain 1 Region: 31 - 117 Aligned: 87 Modelled: 87 Confidence: 99.2% Identity: 26% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 1jzg chain A Region: 31 - 115 Aligned: 85 Modelled: 85 Confidence: 99.1% Identity: 24% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 1cuo chain A Region: 29 - 115 Aligned: 87 Modelled: 87 Confidence: 99.1% Identity: 17% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 1joi chain A Region: 31 - 115 Aligned: 85 Modelled: 85 Confidence: 99.1% Identity: 20% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 1nwp chain A Region: 28 - 115 Aligned: 88 Modelled: 88 Confidence: 99.1% Identity: 18% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 1rkr chain A Region: 31 - 116 Aligned: 86 Modelled: 86 Confidence: 99.1% Identity: 26% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 1cc3 chain A Region: 31 - 115 Aligned: 85 Modelled: 85 Confidence: 99.0% Identity: 22% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 1azc chain A Region: 31 - 117 Aligned: 87 Modelled: 87 Confidence: 99.0% Identity: 20% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 2ov0 chain A domain 1 Region: 23 - 115 Aligned: 90 Modelled: 93 Confidence: 99.0% Identity: 17% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 1id2 chain A Region: 22 - 115 Aligned: 91 Modelled: 94 Confidence: 99.0% Identity: 22% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 3c75 chain B Region: 22 - 115 Aligned: 91 Modelled: 94 Confidence: 99.0% Identity: 22% PDB header:oxidoreductase Chain: B: PDB Molecule:amicyanin; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin Phyre2 PDB 2cua chain A Region: 18 - 115 Aligned: 93 Modelled: 94 Confidence: 98.9% Identity: 26% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Periplasmic domain of cytochrome c oxidase subunit II Phyre2 PDB 1qni chain A domain 1 Region: 31 - 118 Aligned: 84 Modelled: 84 Confidence: 98.8% Identity: 25% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Nitrosocyanin Phyre2 PDB 2aan chain A Region: 30 - 115 Aligned: 86 Modelled: 86 Confidence: 98.7% Identity: 22% PDB header:electron transport Chain: A: PDB Molecule:auracyanin a; PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus Phyre2 PDB 1fwx chain A domain 1 Region: 31 - 117 Aligned: 83 Modelled: 83 Confidence: 98.7% Identity: 23% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Nitrosocyanin Phyre2 PDB 1qhq chain A Region: 18 - 117 Aligned: 100 Modelled: 100 Confidence: 98.7% Identity: 19% Fold: Cupredoxin-like Superfamily: Cupredoxins Family: Plastocyanin/azurin-like Phyre2 PDB 1fft chain G Region: 8 - 121 Aligned: 110 Modelled: 110 Confidence: 92.5% Identity: 16% PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli Phyre2 1 c3at7B_ 2 c3pf0A_ 3 c3n8uB_ 4 c2h47C_ 5 d2ccwa1 6 d1jzga_ 7 d1cuoa_ 8 d1joia_ 9 d1nwpa_ 10 d1rkra_ 11 d1cc3a_ 12 d1azca_ 13 d2ov0a1 14 d1id2a_ 15 c3c75B_ 16 d2cuaa_ 17 d1qnia1 18 c2aanA_ 19 d1fwxa1 20 d1qhqa_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 c1fftG_ 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3at7B_ 100.0 61 PDB header:structural protein Chain: B: PDB Molecule:alginate-binding flagellin; PDBTitle: crystal structure of bacterial cell-surface alginate-binding protein2 algp7 2 c3pf0A_ 100.0 17 PDB header:unknown function Chain: A: PDB Molecule:imelysin-like protein; PDBTitle: crystal structure of an imelysin-like protein (psyc_1802) from2 psychrobacter arcticum 273-4 at 2.15 a resolution 3 c3n8uB_ 99.8 22 PDB header:hydrolase Chain: B: PDB Molecule:imelysin peptidase; PDBTitle: crystal structure of an imelysin peptidase (bacova_03801) from2 bacteroides ovatus at 1.44 a resolution 4 c2h47C_ 99.2 22 PDB header:oxidoreductase/electron transport Chain: C: PDB Molecule:azurin; PDBTitle: crystal structure of an electron transfer complex between2 aromatic amine dephydrogenase and azurin from alcaligenes3 faecalis (form 1) 5 d2ccwa1 99.2 26 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 6 d1jzga_ 99.1 24 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 7 d1cuoa_ 99.1 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 8 d1joia_ 99.1 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 9 d1nwpa_ 99.1 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 10 d1rkra_ 99.1 26 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 11 d1cc3a_ 99.0 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 12 d1azca_ 99.0 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 13 d2ov0a1 99.0 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 14 d1id2a_ 99.0 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 15 c3c75B_ 99.0 22 PDB header:oxidoreductase Chain: B: PDB Molecule:amicyanin; PDBTitle: paracoccus versutus methylamine dehydrogenase in complex2 with amicyanin 16 d2cuaa_ 98.9 26 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 17 d1qnia1 98.8 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 18 c2aanA_ 98.7 22 PDB header:electron transport Chain: A: PDB Molecule:auracyanin a; PDBTitle: auracyanin a: a "blue" copper protein from the green thermophilic2 photosynthetic bacterium,chloroflexus aurantiacus 19 d1fwxa1 98.7 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 20 d1qhqa_ 98.7 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 21 d1bxua_ not modelled 98.6 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 22 d2cuab_ not modelled 98.6 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 23 c1xmeB_ not modelled 98.5 26 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: structure of recombinant cytochrome ba3 oxidase from thermus2 thermophilus 24 d2cj3a1 not modelled 98.5 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 25 d1ibya_ not modelled 98.5 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Nitrosocyanin 26 d1pcsa_ not modelled 98.4 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 27 d2q5ba1 not modelled 98.3 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 28 d7pcya_ not modelled 98.3 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 29 d2plta_ not modelled 98.2 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 30 d1plaa_ not modelled 98.2 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 31 c2iwkB_ not modelled 98.2 23 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: inhibitor-bound form of nitrous oxide reductase from2 achromobacter cycloclastes at 1.7 angstrom resolution 32 d1paza_ not modelled 98.2 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 33 d2jxma1 not modelled 98.2 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 34 d9pcya_ not modelled 98.2 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 35 d1iuza_ not modelled 98.1 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 36 d1plca_ not modelled 98.1 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 37 c3sbrF_ not modelled 98.1 23 PDB header:oxidoreductase Chain: F: PDB Molecule:nitrous-oxide reductase; PDBTitle: pseudomonas stutzeri nitrous oxide reductase, p1 crystal form with2 substrate 38 d1ag6a_ not modelled 98.1 27 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 39 d1bypa_ not modelled 98.1 23 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 40 d1pmya_ not modelled 98.1 11 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 41 d1kdja_ not modelled 98.0 27 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 42 d1adwa_ not modelled 97.9 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 43 c3ef4A_ not modelled 97.8 21 PDB header:electron transport Chain: A: PDB Molecule:blue copper protein; PDBTitle: crystal structure of native pseudoazurin from2 hyphomicrobium denitrificans 44 d1bqka_ not modelled 97.8 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 45 c1qniE_ not modelled 97.8 24 PDB header:oxidoreductase Chain: E: PDB Molecule:nitrous-oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from2 pseudomonas nautica, at 2.4a resolution 46 c1fwxB_ not modelled 97.6 23 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrous oxide reductase; PDBTitle: crystal structure of nitrous oxide reductase from p. denitrificans 47 d1fftb1 not modelled 96.9 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 48 d1e30a_ not modelled 96.9 25 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Plastocyanin/azurin-like 49 d3ehbb1 not modelled 96.6 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 50 c1cyxA_ not modelled 96.5 20 PDB header:electron transport Chain: A: PDB Molecule:cyoa; PDBTitle: quinol oxidase (periplasmic fragment of subunit ii with2 engineered cu-a binding site)(cyoa) 51 d1cyxa_ not modelled 96.5 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 52 d1v54b1 not modelled 96.5 12 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 53 c1ar1B_ not modelled 96.2 18 PDB header:complex (oxidoreductase/antibody) Chain: B: PDB Molecule:cytochrome c oxidase; PDBTitle: structure at 2.7 angstrom resolution of the paracoccus2 denitrificans two-subunit cytochrome c oxidase complexed3 with an antibody fv fragment 54 d3dtub1 not modelled 96.1 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Periplasmic domain of cytochrome c oxidase subunit II 55 d1sddb2 not modelled 95.9 6 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 56 c3gdcC_ not modelled 95.8 11 PDB header:oxidoreductase Chain: C: PDB Molecule:multicopper oxidase; PDBTitle: crystal structure of multicopper oxidase 57 c2dv6F_ not modelled 95.8 12 PDB header:oxidoreductase Chain: F: PDB Molecule:nitrite reductase; PDBTitle: crystal structure of nitrite reductase from hyphomicrobium2 denitrificans 58 d2j5wa2 not modelled 95.7 14 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 59 d1snra2 not modelled 95.6 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 60 c1v55B_ not modelled 95.6 12 PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: bovine heart cytochrome c oxidase at the fully reduced state 61 d1kcwa2 not modelled 95.3 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 62 c1m57H_ not modelled 95.2 15 PDB header:oxidoreductase Chain: H: PDB Molecule:cytochrome c oxidase; PDBTitle: structure of cytochrome c oxidase from rhodobacter2 sphaeroides (eq(i-286) mutant)) 63 c1qleB_ not modelled 95.2 18 PDB header:oxidoreductase/immune system Chain: B: PDB Molecule:cytochrome c oxidase polypeptide ii; PDBTitle: cryo-structure of the paracoccus denitrificans four-subunit2 cytochrome c oxidase in the completely oxidized state3 complexed with an antibody fv fragment 64 d1kbva2 not modelled 95.1 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 65 c1kbwA_ not modelled 94.9 19 PDB header:oxidoreductase Chain: A: PDB Molecule:major outer membrane protein pan 1; PDBTitle: crystal structure of the soluble domain of ania from2 neisseria gonorrhoeae 66 c3isyA_ not modelled 94.8 9 PDB header:protein binding Chain: A: PDB Molecule:intracellular proteinase inhibitor; PDBTitle: crystal structure of an intracellular proteinase inhibitor (ipi,2 bsu11130) from bacillus subtilis at 2.61 a resolution 67 c3cdzB_ not modelled 94.8 9 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor viii light chain; PDBTitle: crystal structure of human factor viii 68 d1ndsa2 not modelled 94.8 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 69 d1nqjb_ not modelled 94.4 13 Fold:CUB-like Superfamily:Collagen-binding domain Family:Collagen-binding domain 70 c1aq8B_ not modelled 94.4 19 PDB header:oxidoreductase Chain: B: PDB Molecule:nitrite reductase; PDBTitle: structure of alcaligenes faecalis nitrite reductase reduced2 with ascorbate 71 c2x41A_ not modelled 94.3 27 PDB header:hydrolase Chain: A: PDB Molecule:beta-glucosidase; PDBTitle: structure of beta-glucosidase 3b from thermotoga neapolitana2 in complex with glucose 72 d2bw4a2 not modelled 94.3 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 73 d2j5wa5 not modelled 94.1 13 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 74 d1snra1 not modelled 94.0 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 75 c1sddB_ not modelled 93.9 5 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor v; PDBTitle: crystal structure of bovine factor vai 76 d1w8oa1 not modelled 93.9 21 Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:E-set domains of sugar-utilizing enzymes 77 c1mzzC_ not modelled 93.8 16 PDB header:oxidoreductase Chain: C: PDB Molecule:copper-containing nitrite reductase; PDBTitle: crystal structure of mutant (m182t)of nitrite reductase 78 c3jqxA_ not modelled 93.4 15 PDB header:cell adhesion Chain: A: PDB Molecule:colh protein; PDBTitle: crystal structure of clostridium histolyticum colh collagenase2 collagen binding domain 3 at 2.2 angstrom resolution in the presence3 of calcium and cadmium 79 c2r7eB_ not modelled 93.4 9 PDB header:blood clotting Chain: B: PDB Molecule:coagulation factor viii; PDBTitle: crystal structure analysis of coagulation factor viii 80 c3rgbA_ not modelled 92.7 24 PDB header:oxidoreductase Chain: A: PDB Molecule:methane monooxygenase subunit b2; PDBTitle: crystal structure of particulate methane monooxygenase from2 methylococcus capsulatus (bath) 81 c1yewI_ not modelled 92.7 24 PDB header:oxidoreductase, membrane protein Chain: I: PDB Molecule:particulate methane monooxygenase, b subunit; PDBTitle: crystal structure of particulate methane monooxygenase 82 c2zooA_ not modelled 92.6 25 PDB header:oxidoreductase Chain: A: PDB Molecule:probable nitrite reductase; PDBTitle: crystal structure of nitrite reductase from pseudoalteromonas2 haloplanktis tac125 83 c1fftG_ 92.5 16 PDB header:oxidoreductase Chain: G: PDB Molecule:ubiquinol oxidase; PDBTitle: the structure of ubiquinol oxidase from escherichia coli 84 d1oe1a1 not modelled 92.5 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 85 d1ndsa1 not modelled 92.4 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 86 c3g5wC_ not modelled 92.4 12 PDB header:metal binding protein Chain: C: PDB Molecule:multicopper oxidase type 1; PDBTitle: crystal structure of blue copper oxidase from nitrosomonas europaea 87 d1v10a2 not modelled 92.3 20 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 88 d1mzya2 not modelled 92.1 17 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 89 d1kyaa2 not modelled 91.9 15 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 90 c2kl6A_ not modelled 91.8 15 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of the cardb domain of pf1109 from2 pyrococcus furiosus. northeast structural genomics3 consortium target pfr193a 91 d1kbva1 not modelled 91.8 22 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 92 d1aoza2 not modelled 91.7 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 93 c2xu9A_ not modelled 91.7 13 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase; PDBTitle: crystal structure of laccase from thermus thermophilus hb27 94 d2bw4a1 not modelled 91.7 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 95 c3cg8B_ not modelled 91.7 13 PDB header:oxidoreductase Chain: B: PDB Molecule:laccase; PDBTitle: laccase from streptomyces coelicolor 96 d1mzya1 not modelled 91.4 16 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 97 d1gyca2 not modelled 91.2 19 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 98 c1v10A_ not modelled 91.2 21 PDB header:oxidase Chain: A: PDB Molecule:laccase; PDBTitle: structure of rigidoporus lignosus laccase from hemihedrally2 twinned crystals 99 d1hfua2 not modelled 91.2 24 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 100 c3kw8A_ not modelled 91.0 14 PDB header:oxidoreductase Chain: A: PDB Molecule:putative copper oxidase; PDBTitle: two-domain laccase from streptomyces coelicolor at 2.3 a resolution 101 c2zwnA_ not modelled 90.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:two-domain type laccase; PDBTitle: crystal structure of the novel two-domain type laccase from a2 metagenome 102 c1kcwA_ not modelled 89.9 11 PDB header:oxidoreductase Chain: A: PDB Molecule:ceruloplasmin; PDBTitle: x-ray crystal structure of human ceruloplasmin at 3.0 angstroms 103 d1io1a_ not modelled 88.9 11 Fold:Phase 1 flagellin Superfamily:Phase 1 flagellin Family:Phase 1 flagellin 104 c2qsvA_ not modelled 88.6 26 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein of unknown function from porphyromonas2 gingivalis w83 105 c1gycA_ not modelled 88.3 19 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase 2; PDBTitle: crystal structure determination at room temperature of a2 laccase from trametes versicolor in its oxidised form3 containing a full complement of copper ions 106 c1wa1X_ not modelled 88.0 19 PDB header:reductase Chain: X: PDB Molecule:dissimilatory copper-containing nitrite PDBTitle: crystal structure of h313q mutant of alcaligenes2 xylosoxidans nitrite reductase 107 d1kv7a1 not modelled 87.7 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 108 c1of0A_ not modelled 87.5 20 PDB header:oxidoreductase Chain: A: PDB Molecule:spore coat protein a; PDBTitle: crystal structure of bacillus subtilis cota after 1h2 soaking with ebs 109 c2uxtA_ not modelled 87.5 17 PDB header:oxidoreductase Chain: A: PDB Molecule:protein sufi; PDBTitle: sufi protein from escherichia coli 110 d1yq2a1 not modelled 87.4 23 Fold:Immunoglobulin-like beta-sandwich Superfamily:beta-Galactosidase/glucuronidase domain Family:beta-Galactosidase/glucuronidase domain 111 c3ac0B_ not modelled 86.5 20 PDB header:hydrolase Chain: B: PDB Molecule:beta-glucosidase i; PDBTitle: crystal structure of beta-glucosidase from kluyveromyces marxianus in2 complex with glucose 112 c2ys4A_ not modelled 84.3 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hydrocephalus-inducing protein homolog; PDBTitle: solution structure of the n-terminal papd-like domain of2 hydin protein from human 113 d1m1sa_ not modelled 83.2 20 Fold:Immunoglobulin-like beta-sandwich Superfamily:PapD-like Family:MSP-like 114 c3payB_ not modelled 82.6 13 PDB header:cell adhesion Chain: B: PDB Molecule:putative adhesin; PDBTitle: crystal structure of a putative adhesin (bacova_04077) from2 bacteroides ovatus at 2.50 a resolution 115 d1x9la_ not modelled 82.1 22 Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:DR1885-like metal-binding protein Family:DR1885-like metal-binding protein 116 c3rfrI_ not modelled 81.8 19 PDB header:oxidoreductase Chain: I: PDB Molecule:pmob; PDBTitle: crystal structure of particulate methane monooxygenase (pmmo) from2 methylocystis sp. strain m 117 d1sdda1 not modelled 81.6 18 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 118 d1gska3 not modelled 81.5 21 Fold:Cupredoxin-like Superfamily:Cupredoxins Family:Multidomain cupredoxins 119 c2q9oA_ not modelled 81.1 21 PDB header:oxidoreductase Chain: A: PDB Molecule:laccase-1; PDBTitle: near-atomic resolution structure of a melanocarpus albomyces laccase 120 c3gf8A_ not modelled 80.6 12 PDB header:carbohydrate binding protein Chain: A: PDB Molecule:putative polysaccharide binding proteins (duf1812); PDBTitle: crystal structure of putative polysaccharide binding proteins2 (duf1812) (np_809975.1) from bacteroides thetaiotaomicron vpi-5482 at3 2.20 a resolution

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0