Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0A6P7
DateThu Jan 5 11:03:39 GMT 2012
Unique Job ID1df4f8c6c13e8619

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1svia_
Top template information
Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
Confidence and coverage
Confidence: 99.9% Coverage: 87%
182 residues ( 87% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTNLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPG
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Disorder  ??????













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   .........70.........80.........90.........100.........110.........120
Sequence  RTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH
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   .........130.........140.........150.........160.........170.........180
Sequence  PLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSS
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   .........190.........200.........210
Sequence  LKKQGVDKLRQKLDTWFSEMQPVEETQDGE
Secondary structure 
















SS confidence 





























Disorder 


















???????????
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Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1svi chain A

3D model

Region: 4 - 199
Aligned: 182
Modelled: 183
Confidence: 99.9%
Identity: 33%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 3pqc chain A

3D model

Region: 7 - 197
Aligned: 189
Modelled: 191
Confidence: 99.9%
Identity: 38%
PDB header:hydrolase
Chain: A: PDB Molecule:probable gtp-binding protein engb;
PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp

Phyre2

PDB 1pui chain A

3D model

Region: 11 - 198
Aligned: 169
Modelled: 175
Confidence: 99.9%
Identity: 99%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: G proteins

Phyre2

PDB 2e87 chain A

3D model

Region: 18 - 199
Aligned: 170
Modelled: 182
Confidence: 99.9%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp

Phyre2

PDB 2hjg chain A

3D model

Region: 22 - 207
Aligned: 177
Modelled: 186
Confidence: 99.9%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp

Phyre2

PDB 3iev chain A

3D model

Region: 28 - 204
Aligned: 172
Modelled: 177
Confidence: 99.9%
Identity: 21%
PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna

Phyre2

PDB 1ega chain B

3D model

Region: 22 - 204
Aligned: 174
Modelled: 183
Confidence: 99.9%
Identity: 21%
PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era

Phyre2

PDB 1mky chain A

3D model

Region: 22 - 207
Aligned: 170
Modelled: 174
Confidence: 99.9%
Identity: 19%
PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains

Phyre2

PDB 1wf3 chain A

3D model

Region: 29 - 204
Aligned: 166
Modelled: 176
Confidence: 99.9%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8

Phyre2

PDB 2qth chain A

3D model

Region: 24 - 200
Aligned: 162
Modelled: 177
Confidence: 99.9%
Identity: 20%
PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp

Phyre2

PDB 1xzq chain A

3D model

Region: 25 - 199
Aligned: 161
Modelled: 175
Confidence: 99.9%
Identity: 26%
PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf

Phyre2

PDB 1udx chain A

3D model

Region: 29 - 210
Aligned: 168
Modelled: 176
Confidence: 99.9%
Identity: 25%
PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8

Phyre2

PDB 3geh chain A

3D model

Region: 26 - 208
Aligned: 147
Modelled: 158
Confidence: 99.9%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn

Phyre2

PDB 1wb1 chain C

3D model

Region: 23 - 209
Aligned: 174
Modelled: 187
Confidence: 99.9%
Identity: 19%
PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp

Phyre2

PDB 1kk3 chain A

3D model

Region: 23 - 207
Aligned: 171
Modelled: 172
Confidence: 99.8%
Identity: 13%
PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+

Phyre2

PDB 1lnz chain A

3D model

Region: 27 - 210
Aligned: 173
Modelled: 184
Confidence: 99.8%
Identity: 17%
PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein

Phyre2

PDB 3lx8 chain A

3D model

Region: 27 - 210
Aligned: 170
Modelled: 184
Confidence: 99.8%
Identity: 22%
PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus

Phyre2

PDB 3a1v chain B

3D model

Region: 27 - 209
Aligned: 164
Modelled: 183
Confidence: 99.8%
Identity: 20%
PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form

Phyre2

PDB 3izy chain P

3D model

Region: 24 - 209
Aligned: 173
Modelled: 186
Confidence: 99.8%
Identity: 16%
PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2

Phyre2

PDB 3qq5 chain A

3D model

Region: 20 - 208
Aligned: 165
Modelled: 186
Confidence: 99.8%
Identity: 18%
PDB header:oxidoreductase
Chain: A: PDB Molecule:small gtp-binding protein;
PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf

Phyre2
1

d1svia_
2

c3pqcA_
3

d1puia_
4

c2e87A_
5

c2hjgA_
6

c3ievA_
7

c1egaB_
8

c1mkyA_
9

c1wf3A_
10

c2qthA_
11

c1xzqA_
12

c1udxA_
13

c3gehA_
14

c1wb1C_
15

c1kk3A_
16

c1lnzA_
17

c3lx8A_
18

c3a1vB_
19

c3izyP_
20

c3qq5A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1svia_



99.9 33 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
2c3pqcA_



99.9 38 PDB header:hydrolase
Chain: A: PDB Molecule:probable gtp-binding protein engb;
PDBTitle: crystal structure of thermotoga maritima ribosome biogenesis gtp-2 binding protein engb (ysxc/yiha) in complex with gdp
3d1puia_



99.9 99 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
4c2e87A_



99.9 22 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein ph1320;
PDBTitle: crystal structure of hypothetical gtp-binding protein ph1320 from2 pyrococcus horikoshii ot3, in complex with gdp
5c2hjgA_



99.9 18 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein enga;
PDBTitle: the crystal structure of the b. subtilis yphc gtpase in2 complex with gdp
6c3ievA_



99.9 21 PDB header:nucleotide binding protein/rna
Chain: A: PDB Molecule:gtp-binding protein era;
PDBTitle: crystal structure of era in complex with mggnp and the 3' end of 16s2 rrna
7c1egaB_



99.9 21 PDB header:hydrolase
Chain: B: PDB Molecule:protein (gtp-binding protein era);
PDBTitle: crystal structure of a widely conserved gtpase era
8c1mkyA_



99.9 19 PDB header:ligand binding protein
Chain: A: PDB Molecule:probable gtp-binding protein enga;
PDBTitle: structural analysis of the domain interactions in der, a2 switch protein containing two gtpase domains
9c1wf3A_



99.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of gtp-binding protein tt1341 from thermus2 thermophilus hb8
10c2qthA_



99.9 20 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of a gtp-binding protein from the2 hyperthermophilic archaeon sulfolobus solfataricus in3 complex with gdp
11c1xzqA_



99.9 26 PDB header:hydrolase
Chain: A: PDB Molecule:probable trna modification gtpase trme;
PDBTitle: structure of the gtp-binding protein trme from thermotoga2 maritima complexed with 5-formyl-thf
12c1udxA_



99.9 25 PDB header:protein binding
Chain: A: PDB Molecule:the gtp-binding protein obg;
PDBTitle: crystal structure of the conserved protein tt1381 from thermus2 thermophilus hb8
13c3gehA_



99.9 22 PDB header:hydrolase
Chain: A: PDB Molecule:trna modification gtpase mnme;
PDBTitle: crystal structure of mnme from nostoc in complex with gdp, folinic2 acid and zn
14c1wb1C_



99.9 19 PDB header:protein synthesis
Chain: C: PDB Molecule:translation elongation factor selb;
PDBTitle: crystal structure of translation elongation factor selb2 from methanococcus maripaludis in complex with gdp
15c1kk3A_



99.8 13 PDB header:translation
Chain: A: PDB Molecule:eif2gamma;
PDBTitle: structure of the wild-type large gamma subunit of2 initiation factor eif2 from pyrococcus abyssi complexed3 with gdp-mg2+
16c1lnzA_



99.8 17 PDB header:cell cycle
Chain: A: PDB Molecule:spo0b-associated gtp-binding protein;
PDBTitle: structure of the obg gtp-binding protein
17c3lx8A_



99.8 22 PDB header:metal transport
Chain: A: PDB Molecule:ferrous iron uptake transporter protein b;
PDBTitle: crystal structure of gdp-bound nfeob from s. thermophilus
18c3a1vB_



99.8 20 PDB header:transport protein
Chain: B: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the cytosolic domain of t. maritima feob2 iron iransporter in apo form
19c3izyP_



99.8 16 PDB header:rna, ribosomal protein
Chain: P: PDB Molecule:translation initiation factor if-2, mitochondrial;
PDBTitle: mammalian mitochondrial translation initiation factor 2
20c3qq5A_



99.8 18 PDB header:oxidoreductase
Chain: A: PDB Molecule:small gtp-binding protein;
PDBTitle: crystal structure of the [fefe]-hydrogenase maturation protein hydf
21d1egaa1



not modelled 99.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
22c1g7tA_



not modelled 99.8 16 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor if2/eif5b;
PDBTitle: x-ray structure of translation initiation factor if2/eif5b2 complexed with gdpnp
23c3k53B_



not modelled 99.8 20 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b;
PDBTitle: crystal structure of nfeob from p. furiosus
24c2qu8A_



not modelled 99.8 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative nucleolar gtp-binding protein 1;
PDBTitle: crystal structure of putative nucleolar gtp-binding protein 1 pff0625w2 from plasmodium falciparum
25d1wb1a4



not modelled 99.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
26c2wjjB_



not modelled 99.8 18 PDB header:metal transport
Chain: B: PDB Molecule:ferrous iron transport protein b homolog;
PDBTitle: structure and function of the feob g-domain from2 methanococcus jannaschii
27c3ibyA_



not modelled 99.8 19 PDB header:transport protein
Chain: A: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of cytosolic domain of l. pneumophila feob
28c2ywfA_



not modelled 99.8 12 PDB header:translation
Chain: A: PDB Molecule:gtp-binding protein lepa;
PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
29d2cxxa1



not modelled 99.8 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
30c3i8sC_



not modelled 99.8 16 PDB header:transport protein
Chain: C: PDB Molecule:ferrous iron transport protein b;
PDBTitle: structure of the cytosolic domain of e. coli feob, nucleotide-free2 form
31d1lnza2



not modelled 99.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
32d1kk1a3



not modelled 99.8 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
33d1wf3a1



not modelled 99.8 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
34c1zo1I_



not modelled 99.8 19 PDB header:translation/rna
Chain: I: PDB Molecule:translation initiation factor 2;
PDBTitle: if2, if1, and trna fitted to cryo-em data of e. coli 70s2 initiation complex
35c3o47A_



not modelled 99.8 17 PDB header:hydrolase, hydrolase activator
Chain: A: PDB Molecule:adp-ribosylation factor gtpase-activating protein 1, adp-
PDBTitle: crystal structure of arfgap1-arf1 fusion protein
36c2dykB_



not modelled 99.8 23 PDB header:ribosome
Chain: B: PDB Molecule:gtp-binding protein;
PDBTitle: crystal structure of n-terminal gtp-binding domain of enga from2 thermus thermophilus hb8
37c2plfA_



not modelled 99.8 15 PDB header:translation
Chain: A: PDB Molecule:translation initiation factor 2 gamma subunit;
PDBTitle: the structure of aif2gamma subunit from the archaeon2 sulfolobus solfataricus in the nucleotide-free form.
38c3degC_



not modelled 99.8 15 PDB header:ribosome
Chain: C: PDB Molecule:gtp-binding protein lepa;
PDBTitle: complex of elongating escherichia coli 70s ribosome and ef4(lepa)-2 gmppnp
39d2bv3a2



not modelled 99.7 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
40c2wwwB_



not modelled 99.7 17 PDB header:transport protein
Chain: B: PDB Molecule:methylmalonic aciduria type a protein,
PDBTitle: crystal structure of methylmalonic acidemia type a protein
41d1mkya2



not modelled 99.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
42c3lvrE_



not modelled 99.7 13 PDB header:protein transport
Chain: E: PDB Molecule:arf-gap with sh3 domain, ank repeat and ph domain-
PDBTitle: the crystal structure of asap3 in complex with arf6 in transition2 state soaked with calcium
43d1fzqa_



not modelled 99.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
44c3c5hA_



not modelled 99.7 13 PDB header:signaling protein
Chain: A: PDB Molecule:glucocorticoid receptor dna-binding factor 1;
PDBTitle: crystal structure of the ras homolog domain of human grlf12 (p190rhogap)
45d2gj8a1



not modelled 99.7 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
46c2wkqA_



not modelled 99.7 15 PDB header:transferase, cell adhesion
Chain: A: PDB Molecule:nph1-1, ras-related c3 botulinum toxin substrate
PDBTitle: structure of a photoactivatable rac1 containing the lov22 c450a mutant
47c3a1wA_



not modelled 99.7 17 PDB header:transport protein
Chain: A: PDB Molecule:iron(ii) transport protein b;
PDBTitle: crystal structue of the g domain of t. maritima feob iron2 iransporter
48d1mkya1



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
49d1tq4a_



not modelled 99.7 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
50d1udxa2



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
51d1ksha_



not modelled 99.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
52d2qn6a3



not modelled 99.7 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
53d1zunb3



not modelled 99.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
54d1mr3f_



not modelled 99.7 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
55c2hf9A_



not modelled 99.7 13 PDB header:hydrolase, metal binding protein
Chain: A: PDB Molecule:probable hydrogenase nickel incorporation
PDBTitle: crystal structure of hypb from methanocaldococcus2 jannaschii in the triphosphate form
56d1ds6a_



not modelled 99.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
57d2erxa1



not modelled 99.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
58d2qm8a1



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
59d2b6ha1



not modelled 99.7 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
60d1upta_



not modelled 99.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
61c2rexD_



not modelled 99.7 11 PDB header:signaling protein/lipoprotein
Chain: D: PDB Molecule:rho-related gtp-binding protein rho6;
PDBTitle: crystal structure of the effector domain of plxnb1 bound with rnd12 gtpase
62d1zj6a1



not modelled 99.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
63d1moza_



not modelled 99.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
64c2xtpA_



not modelled 99.7 15 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of nucleotide-free human gimap2, amino2 acid residues 1-260
65c3md0A_



not modelled 99.7 17 PDB header:transport protein
Chain: A: PDB Molecule:arginine/ornithine transport system atpase;
PDBTitle: crystal structure of arginine/ornithine transport system2 atpase from mycobacterium tuberculosis bound to gdp (a ras-3 like gtpase superfamily protein)
66d2atxa1



not modelled 99.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
67d1byua_



not modelled 99.7 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
68c2h57A_



not modelled 99.7 12 PDB header:transport protein
Chain: A: PDB Molecule:adp-ribosylation factor-like protein 6;
PDBTitle: crystal structure of human adp-ribosylation factor-like 6
69d1d2ea3



not modelled 99.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
70d2dy1a2



not modelled 99.7 27 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
71d1yzna1



not modelled 99.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
72d1yzga1



not modelled 99.7 10 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
73d1x3sa1



not modelled 99.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
74d1u8za_



not modelled 99.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
75d2fn4a1



not modelled 99.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
76d2f9la1



not modelled 99.7 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
77c2wsmB_



not modelled 99.7 12 PDB header:metal binding protein
Chain: B: PDB Molecule:hydrogenase expression/formation protein (hypb);
PDBTitle: crystal structure of hydrogenase maturation factor hypb from2 archaeoglobus fulgidus
78c3cbqA_



not modelled 99.7 13 PDB header:nucleotide binding protein
Chain: A: PDB Molecule:gtp-binding protein rem 2;
PDBTitle: crystal structure of the human rem2 gtpase with bound gdp
79c3regA_



not modelled 99.7 13 PDB header:signaling protein
Chain: A: PDB Molecule:rho-like small gtpase;
PDBTitle: crystal structure of ehrho1 bound to a gtp analog and magnesium
80c2xtnA_



not modelled 99.7 15 PDB header:immune system
Chain: A: PDB Molecule:gtpase imap family member 2;
PDBTitle: crystal structure of gtp-bound human gimap2, amino acid2 residues 1-234
81c1d2eA_



not modelled 99.7 15 PDB header:rna binding protein
Chain: A: PDB Molecule:elongation factor tu (ef-tu);
PDBTitle: crystal structure of mitochondrial ef-tu in complex with gdp
82d1z6xa1



not modelled 99.7 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
83c3nxsA_



not modelled 99.7 14 PDB header:transport protein
Chain: A: PDB Molecule:lao/ao transport system atpase;
PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
84c3tw8B_



not modelled 99.7 12 PDB header:protein transport
Chain: B: PDB Molecule:ras-related protein rab-35;
PDBTitle: gef domain of dennd 1b in complex with rab gtpase rab35
85c2bovA_



not modelled 99.7 13 PDB header:transferase
Chain: A: PDB Molecule:ras-related protein ral-a;
PDBTitle: molecular recognition of an adp-ribosylating clostridium2 botulinum c3 exoenzyme by rala gtpase
86d1mh1a_



not modelled 99.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
87c2ew1A_



not modelled 99.7 15 PDB header:signaling protein
Chain: A: PDB Molecule:ras-related protein rab-30;
PDBTitle: crystal structure of rab30 in complex with a gtp analogue
88d2ew1a1



not modelled 99.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
89d2fg5a1



not modelled 99.7 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
90c2fg5A_



not modelled 99.7 12 PDB header:signaling protein
Chain: A: PDB Molecule:ras-related protein rab-31;
PDBTitle: crystal structure of human rab31 in complex with a gtp2 analogue
91c2x77B_



not modelled 99.7 17 PDB header:gtp-binding protein
Chain: B: PDB Molecule:adp-ribosylation factor;
PDBTitle: crystal structure of leishmania major adp ribosylation2 factor-like 1.
92d2bcgy1



not modelled 99.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
93d2bmea1



not modelled 99.7 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
94d2d7ca1



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
95c2nzjB_



not modelled 99.7 13 PDB header:signaling protein
Chain: B: PDB Molecule:gtp-binding protein rem 1;
PDBTitle: the crystal structure of rem1 in complex with gdp
96d1c1ya_



not modelled 99.7 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
97d1ctqa_



not modelled 99.7 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
98d1r8sa_



not modelled 99.7 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
99c3bbpA_



not modelled 99.7 16 PDB header:protein transport/splicing
Chain: A: PDB Molecule:ras-related protein rab-6a;
PDBTitle: rab6-gtp:gcc185 rab binding domain complex
100c3t1tC_



not modelled 99.7 12 PDB header:hydrolase
Chain: C: PDB Molecule:gliding protein mgla;
PDBTitle: mgla bound to gdp in p1 tetrameric arrangement
101d1z0fa1



not modelled 99.7 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
102d1yzqa1



not modelled 99.7 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
103d2ngra_



not modelled 99.7 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
104c2g3yA_



not modelled 99.7 11 PDB header:signaling protein
Chain: A: PDB Molecule:gtp-binding protein gem;
PDBTitle: crystal structure of the human small gtpase gem
105d2g3ya1



not modelled 99.7 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
106c2h18A_



not modelled 99.7 17 PDB header:transport protein
Chain: A: PDB Molecule:adp-ribosylation factor-like protein 8a;
PDBTitle: structure of human adp-ribosylation factor-like 10b (arl10b)
107c2gf0C_



not modelled 99.7 11 PDB header:transport protein
Chain: C: PDB Molecule:gtp-binding protein di-ras1;
PDBTitle: the crystal structure of the human diras1 gtpase in the2 inactive gdp bound state
108c2oilA_



not modelled 99.7 13 PDB header:protein transport
Chain: A: PDB Molecule:ras-related protein rab-25;
PDBTitle: crystal structure of human rab25 in complex with gdp
109d2gf0a1



not modelled 99.7 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
110d1kmqa_



not modelled 99.7 11 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
111c1zbdA_



not modelled 99.7 13 PDB header:g protein
Chain: A: PDB Molecule:rabphilin-3a;
PDBTitle: structural basis of rab effector specificity: crystal2 structure of the small g protein rab3a complexed with the3 effector domain of rabphilin-3a
112d1g7sa4



not modelled 99.7 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
113d1d5ca_



not modelled 99.6 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
114d1z0ja1



not modelled 99.6 10 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
115d1z2aa1



not modelled 99.6 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
116d1zd9a1



not modelled 99.6 10 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
117d1z0aa1



not modelled 99.6 13 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
118c3conA_



not modelled 99.6 12 PDB header:hydrolase
Chain: A: PDB Molecule:gtpase nras;
PDBTitle: crystal structure of the human nras gtpase bound with gdp
119d2erya1



not modelled 99.6 12 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:G proteins
120c1m2oD_



not modelled 99.6 20 PDB header:protein transport/signaling protein
Chain: D: PDB Molecule:gtp-binding protein sar1;
PDBTitle: crystal structure of the sec23-sar1 complex

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0